Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019900

Physical Location & Seq

Genomic Coordinates Forward (+)

12338262 .. 12341590

Gene Structure 3329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCTTGAGGATCTAAGACGTCGATTCATATGTGAAGTCATCGAGAAAAGTGAGGTCTCCATTATTGAAAGAAGAGAAATTAAAAGGCGTCCGAATGAGGCTTTGCTATCGATTAATTGCTTCCAGAAGGATCTAGGGGATCCGAACCCGTTGGTGAGGGCATGGGCACTGCGAGCCATGGCTGGGATTAGGCTGCATGTTATTGCACCTTTGGTTGTGGTTGCTGTTGGAAAATGTGCTAGAGATCCGTCTGTGTATGTTCGAAAATGTGCTGCCAATGCACTTACTAAGCTAATGATTTGCGCCTTGATGAGTATACTAGCAGTATTGAAGAGGTCTGATTCATTTTTATGTTCAATAGTTGCAGACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

AP3B1_C Adaptin_N

Protein Analysis

124

Amino Acids

13.89

Weight (kDa)

9.41

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	28 - 99	1.1e-14	Adaptin N terminal region
Cnd1	PF12717	51 - 101	8.2e-07	non-SMC mitotic condensation complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019900)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0137011
rosa_laevigata	RLG00000003950
rosa_multiflora	Rmu_sc0003630.1_g000046
rosa_samantha	Rh2AG386200 Rh2CG373500 Rh2DG409200 Rh5DG128900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	316
AclWI	GGATC	5 cut(s)	18, 134, 138, 147, 239
AcyI	GRCGYC	2 cut(s)	19, 88
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	68, 331, 357
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	5 cut(s)	18, 134, 138, 147, 239
ApeKI	GCWGC	2 cut(s)	193, 272
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	180, 259
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	3 cut(s)	134, 240, 320
BisI	GCNGC	2 cut(s)	194, 273
BlsI	GCNGC	2 cut(s)	195, 274
BmiI	GGNNCC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	19, 88
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	180, 259
BseYI	CCCAGC	1 cut(s)	182
BshVI	ATCGAT	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	10, 130, 139, 244
Bsp19I	CCATGG	1 cut(s)	177
BspDI	ATCGAT	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	5 cut(s)	18, 134, 138, 147, 239
BspT104I	TTCGAA	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	4 cut(s)	10, 130, 139, 244
BssNAI	GTATAC	1 cut(s)	317
BssNI	GRCGYC	2 cut(s)	19, 88
BssT1I	CCWWGG	1 cut(s)	177
Bst1107I	GTATAC	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	67, 326
BstACI	GRCGYC	2 cut(s)	19, 88
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	14, 288
BstDSI	CCRYGG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	4 cut(s)	13, 133, 142, 247
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	4 cut(s)	10, 130, 139, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 278
BstNSI	RCATGY	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	180, 259
BstX2I	RGATCY	4 cut(s)	10, 130, 139, 244
BstYI	RGATCY	4 cut(s)	10, 130, 139, 244
BstZ17I	GTATAC	1 cut(s)	317
Bsu15I	ATCGAT	1 cut(s)	110
BsuTUI	ATCGAT	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	110
CseI	GACGC	1 cut(s)	77
CviAII	CATG	3 cut(s)	162, 178, 197
CviJI	RGCY	5 cut(s)	101, 176, 182, 193, 292
CviKI_1	RGCY	5 cut(s)	101, 176, 182, 193, 292
DdeI	CTNAG	2 cut(s)	14, 288
DpnI	GATC	4 cut(s)	12, 132, 141, 246
DpnII	GATC	4 cut(s)	10, 130, 139, 244
Eam1104I	CTCTTC	2 cut(s)	67, 326
EarI	CTCTTC	2 cut(s)	67, 326
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	165, 181, 200
FaiI	YATR	8 cut(s)	29, 31, 163, 179, 198, 258, 317, 352
FatI	CATG	3 cut(s)	161, 177, 196
FauNDI	CATATG	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	194, 273
Fsp4HI	GCNGC	2 cut(s)	194, 273
FspBI	CTAG	3 cut(s)	134, 240, 320
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	2 cut(s)	194, 273
GsaI	CCCAGC	1 cut(s)	186
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	305
Hin1I	GRCGYC	2 cut(s)	19, 88
Hin1II	CATG	3 cut(s)	165, 181, 200
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HinfI	GANTC	2 cut(s)	24, 341
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	3 cut(s)	93, 144, 340
Hpy188III	TCNNGA	2 cut(s)	43, 124
Hpy8I	GTNNAC	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	196, 206, 281, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 278
HpyF3I	CTNAG	2 cut(s)	14, 288
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	2 cut(s)	19, 88
Hsp92II	CATG	3 cut(s)	165, 181, 200
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	10, 130, 139, 244
LpnPI	CCDG	2 cut(s)	137, 168
Lsp1109I	GCAGC	2 cut(s)	180, 259
MaeI	CTAG	3 cut(s)	134, 240, 320
MaeII	ACGT	1 cut(s)	19
MalI	GATC	4 cut(s)	12, 132, 141, 246
MboI	GATC	4 cut(s)	10, 130, 139, 244
MboII	GAAGA	2 cut(s)	84, 343
MflI	RGATCY	4 cut(s)	10, 130, 139, 244
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	78, 115
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	4 cut(s)	46, 91, 150, 327
MseI	TTAA	2 cut(s)	81, 114
MslI	CAYNNNNRTG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	173, 278
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	29
NdeII	GATC	4 cut(s)	10, 130, 139, 244
NlaIII	CATG	3 cut(s)	165, 181, 200
NlaIV	GGNNCC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	200
NspV	TTCGAA	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	24, 341
PkrI	GCNGC	2 cut(s)	195, 274
PshBI	ATTAAT	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	141
PsuI	RGATCY	4 cut(s)	10, 130, 139, 244
RseI	CAYNNNNRTG	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	81, 114
SatI	GCNGC	2 cut(s)	194, 273
Sau3AI	GATC	4 cut(s)	10, 130, 139, 244
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	5 cut(s)	22, 57, 211, 294, 338
SfuI	TTCGAA	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	78, 115
SspMI	CTAG	3 cut(s)	134, 240, 320
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	4 cut(s)	22, 42, 110, 262
TasI	AATT	2 cut(s)	78, 115
TfiI	GAWTC	2 cut(s)	24, 341
Tru1I	TTAA	2 cut(s)	81, 114
Tru9I	TTAA	2 cut(s)	81, 114
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	2 cut(s)	193, 272
TspDTI	ATGAA	2 cut(s)	16, 333
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	174
VspI	ATTAAT	1 cut(s)	114
XceI	RCATGY	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	3 cut(s)	134, 240, 320
ZraI	GACGTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.