Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003633.1

Orthogroup ID

OG0020003

Physical Location & Seq

Genomic Coordinates Forward (+)

15639 .. 16468

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgcttagaggtcaacgacctctgtttccatccgtctcaacctctcctatacattggttccacagacgggtgcatagtgcagtacatggggttgcttctgttgcttgtagctcgttgattggagctgacaaagttatcagcctgggtagggatggaactgttaagtgctgggatattggagatggaggtctatccaggtttccctttgtggcgatcccgacgaatgcttaccacttctgtaagctttcgttggtaaagagacctcattcttgttctacacaagttgacgggccaaagcatcatgacggaggtgagcgggagactactggtgcagatactctggatgataatgaagaaaatgtccaagggtatctgtctgagcagtctagaaccaatgaaggcttgttaagattagtagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

140

Amino Acids

15.29

Weight (kDa)

7.08

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020003)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011175
rosa_multiflora	Rmu_sc0003633.1_g000003
rosa_samantha	Rh6AG425900 Rh6AG426000 Rh6BG476400 Rh6CG438700 Rh6DG426100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	316
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	1 cut(s)	208
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	67, 148
AjnI	CCWGG	2 cut(s)	141, 194
AluBI	AGCT	3 cut(s)	111, 125, 244
AluI	AGCT	3 cut(s)	111, 125, 244
Alw26I	GTCTC	3 cut(s)	40, 253, 314
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	323
BccI	CCATC	3 cut(s)	37, 146, 176
BciT130I	CCWGG	2 cut(s)	143, 196
BcoDI	GTCTC	3 cut(s)	40, 253, 314
BfaI	CTAG	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	143, 196
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	2 cut(s)	143, 196
BmsI	GCATC	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	142, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 148
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	143, 196
BseDI	CCNNGG	2 cut(s)	142, 364
BseGI	GGATG	3 cut(s)	29, 157, 349
BseLI	CCNNNNNNNGG	2 cut(s)	67, 148
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	2 cut(s)	99, 351
BshFI	GGCC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	67, 148
BsmAI	GTCTC	3 cut(s)	40, 253, 314
BsmBI	CGTCTC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	142, 364
BssMI	GATC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	2 cut(s)	143, 196
Bst4CI	ACNGT	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	5, 378
BstF5I	GGATG	3 cut(s)	29, 157, 349
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	3 cut(s)	40, 253, 314
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	2 cut(s)	143, 196
BstSCI	CCNGG	2 cut(s)	141, 194
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	3 cut(s)	29, 157, 349
CciI	TCATGA	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	86, 302
CviJI	RGCY	6 cut(s)	111, 125, 141, 244, 292, 402
CviKI_1	RGCY	6 cut(s)	111, 125, 141, 244, 292, 402
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	5, 378
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	141, 194
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	2 cut(s)	89, 305
FaiI	YATR	4 cut(s)	50, 75, 87, 303
FatI	CATG	2 cut(s)	85, 301
FauI	CCCGC	1 cut(s)	309
FokI	GGATG	3 cut(s)	16, 164, 356
FspBI	CTAG	1 cut(s)	387
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	89, 305
HincII	GTYRAC	2 cut(s)	14, 286
HindII	GTYRAC	2 cut(s)	14, 286
HindIII	AAGCTT	1 cut(s)	242
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	14, 286
Hpy188I	TCNGA	2 cut(s)	379, 422
Hpy188III	TCNNGA	4 cut(s)	217, 302, 341, 387
Hpy8I	GTNNAC	2 cut(s)	14, 286
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	73, 80, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	2 cut(s)	5, 378
Hsp92II	CATG	2 cut(s)	89, 305
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	7 cut(s)	128, 154, 155, 181, 208, 312, 326
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	387
MalI	GATC	1 cut(s)	215
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	365
MnlI	CCTC	5 cut(s)	30, 52, 179, 273, 302
MseI	TTAA	2 cut(s)	162, 407
MspR9I	CCNGG	2 cut(s)	143, 196
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	143, 196
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	2 cut(s)	89, 305
NlaIV	GGNNCC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	301
PctI	GAATGC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	141, 194
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	2 cut(s)	141, 194
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	290
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	162, 407
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	143, 196
SfaNI	GCATC	1 cut(s)	307
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	141, 194
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	160
TatI	WGTACW	1 cut(s)	82
Tru1I	TTAA	2 cut(s)	162, 407
Tru9I	TTAA	2 cut(s)	162, 407
TspDTI	ATGAA	2 cut(s)	366, 411
TspGWI	ACGGA	2 cut(s)	22, 321
XbaI	TCTAGA	1 cut(s)	386
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.