Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003722.1

Orthogroup ID

OG0020738

Physical Location & Seq

Genomic Coordinates Forward (+)

102349 .. 106436

Gene Structure 4088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003722.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggaggcggggtcagccgaggagcagcagagcatggtggctctgtttatggagatcgtcgtcggccagaccgacgagaccgcccggtggtttttgcaggctacgggttggaacctagaggaagcacttcagctgttttatgtgggtaatgaagcgggggcgatggctccgccgcagccgcctgctgagaatgctagtaatttgactgaacagagttctagggtgaatgagactgtggcacaatatggtaaggatgaagtgtgtgcctcgatgtcggttataagggacgtcctgtatgatgatgttgcactctatggggctgggttgctttcatctacatcaccaatgacaagacttccagtaaacgaatcgggtgtgattgcattccgcaactttaatgaggaattgaaacatcctggagtatgggaatcaaatgaaggtgctacatccgcaacagatagctctcgagataatctcgcttccttgtatcgtcctccctttcagctactgttccagggttcttttgaaaaggtggtggaagcccaacatcaggtggaggaagcccaacatcaggtgaaggaagtccgagacgagactatcagcttcacccaacaaggagcttggaagcccaacatcaggaagtccgagaggagactatcagcttcacccaacaaggagctcaacatcaggtggaggaagctcgacgtgaggccatcagttccacccaacaaggagcttgaaagcccaacatcaggtggaggaagcccaacatcaggtgaaggaagtccgagacgagactatcagcttcacccaacaaggagcttggaagcccaacatcaggtggaggaagcccgacatgaggccatcagttccacccaagaaaggagcttggaagccaacatcaggttgctttcatctacatcaccaatgacaagacttccagtaagcgaatcgggtgtgattgcattccgcaactttaatgaggaattgaaacatcctggagtatgggaatcaaatgaaggtgctacatccgcgacagatagctctcgagataatctcgcttccttgtatcgtcctccctttcagctactgttccagggttcttttgaaaaggtgtggtattttgacgttatcttccttgctttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0030674 GO:0032182 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0060090 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_7 UBA_4 UBX

Protein Analysis

382

Amino Acids

42.55

Weight (kDa)

4.93

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020738)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003722.1_g000020
rosa_samantha	Rh1AG132600 Rh1CG126500 Rh4AG425800 Rh4BG202300 Rh4CG211200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AatII	GACGTC	1 cut(s)	291
AccII	CGCG	1 cut(s)	1034
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	288
AgsI	TTSAA	5 cut(s)	409, 527, 740, 991, 1109
AjiI	CACGTC	1 cut(s)	706
AjnI	CCWGG	4 cut(s)	415, 513, 997, 1095
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	7 cut(s)	71, 224, 582, 587, 646, 784, 789
AlwNI	CAGNNNCTG	2 cut(s)	508, 1090
Ama87I	CYCGRG	2 cut(s)	465, 1047
AoxI	GGCC	3 cut(s)	64, 710, 861
ApeKI	GCWGC	2 cut(s)	25, 175
Asp700I	GAANNNNTTC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	8 cut(s)	235, 333, 586, 598, 657, 788, 800, 915
AvaI	CYCGRG	2 cut(s)	465, 1047
BanII	GRGCYC	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	2 cut(s)	37, 187
BccI	CCATC	3 cut(s)	157, 721, 872
BciT130I	CCWGG	4 cut(s)	417, 515, 999, 1097
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	7 cut(s)	71, 224, 582, 587, 646, 784, 789
BfaI	CTAG	3 cut(s)	116, 195, 219
BisI	GCNGC	4 cut(s)	26, 173, 176, 179
BlsI	GCNGC	4 cut(s)	27, 174, 177, 180
Bme1390I	CCNGG	5 cut(s)	85, 417, 515, 999, 1097
BmeT110I	CYCGRG	2 cut(s)	465, 1047
BmgBI	CACGTC	1 cut(s)	706
BmiI	GGNNCC	2 cut(s)	113, 168
BmrFI	CCNGG	5 cut(s)	85, 417, 515, 999, 1097
BplI	GAGNNNNNCTC	4 cut(s)	459, 491, 1041, 1073
BpmI	CTGGAG	2 cut(s)	438, 1020
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	18, 514, 1096
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	359, 941
BseBI	CCWGG	4 cut(s)	417, 515, 999, 1097
BseDI	CCNNGG	3 cut(s)	18, 514, 1096
BseGI	GGATG	5 cut(s)	259, 412, 446, 994, 1028
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	359, 941
BseRI	GAGGAG	2 cut(s)	35, 664
BseXI	GCAGC	2 cut(s)	37, 187
BseYI	CCCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	1034
BshFI	GGCC	3 cut(s)	66, 712, 863
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	2 cut(s)	465, 1047
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	299
BsmAI	GTCTC	7 cut(s)	71, 224, 582, 587, 646, 784, 789
BsmBI	CGTCTC	2 cut(s)	582, 784
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	3 cut(s)	196, 383, 965
BsnI	GGCC	3 cut(s)	66, 712, 863
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	2 cut(s)	465, 1047
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	1 cut(s)	54
BspANI	GGCC	3 cut(s)	66, 712, 863
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	1034
BspLI	GGNNCC	2 cut(s)	113, 168
BspTNI	GGTCTC	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	359, 941
BssECI	CCNNGG	3 cut(s)	18, 514, 1096
BssMI	GATC	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	4 cut(s)	417, 515, 999, 1097
Bst4CI	ACNGT	3 cut(s)	235, 510, 1092
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	99, 183
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	5 cut(s)	259, 412, 446, 994, 1028
BstFNI	CGCG	1 cut(s)	1034
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	7 cut(s)	71, 224, 582, 587, 646, 784, 789
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 178, 191, 449, 1031
BstNI	CCWGG	4 cut(s)	417, 515, 999, 1097
BstSCI	CCNGG	5 cut(s)	83, 415, 513, 997, 1095
BstUI	CGCG	1 cut(s)	1034
BstV1I	GCAGC	2 cut(s)	37, 187
BsuRI	GGCC	3 cut(s)	66, 712, 863
BtgZI	GCGATG	1 cut(s)	176
BtrI	CACGTC	1 cut(s)	706
BtsCI	GGATG	5 cut(s)	259, 412, 446, 994, 1028
Cac8I	GCNNGC	2 cut(s)	99, 183
CaiI	CAGNNNCTG	2 cut(s)	508, 1090
CviAII	CATG	2 cut(s)	34, 857
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	681
Eco31I	GGTCTC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	2 cut(s)	465, 1047
EcoICRI	GAGCTC	1 cut(s)	679
EcoRII	CCWGG	4 cut(s)	415, 513, 997, 1095
EcoT38I	GRGCYC	1 cut(s)	681
Esp3I	CGTCTC	2 cut(s)	582, 784
FaeI	CATG	2 cut(s)	37, 860
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	33, 856
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	26, 173, 176, 179
FokI	GGATG	5 cut(s)	266, 399, 433, 981, 1015
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	4 cut(s)	26, 173, 176, 179
FspBI	CTAG	3 cut(s)	116, 195, 219
GluI	GCNGC	4 cut(s)	26, 173, 176, 179
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	2 cut(s)	438, 1020
HaeIII	GGCC	3 cut(s)	66, 712, 863
HapII	CCGG	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	37, 860
HinfI	GANTC	4 cut(s)	368, 428, 950, 1010
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	8 cut(s)	235, 333, 586, 598, 657, 788, 800, 915
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	587, 646, 789
Hpy188III	TCNNGA	5 cut(s)	465, 467, 637, 1047, 1049
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	4 cut(s)	62, 65, 77, 707
HpyAV	CCTTC	4 cut(s)	431, 571, 773, 1013
HpyCH4III	ACNGT	3 cut(s)	235, 510, 1092
HpyCH4IV	ACGT	3 cut(s)	288, 705, 1128
HpyCH4V	TGCA	4 cut(s)	97, 308, 383, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 178, 191, 449, 1031
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	3 cut(s)	288, 705, 1128
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	37, 860
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	7 cut(s)	22, 172, 617, 676, 733, 819, 885
Lsp1109I	GCAGC	2 cut(s)	37, 187
MaeI	CTAG	3 cut(s)	116, 195, 219
MaeII	ACGT	3 cut(s)	288, 705, 1128
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	1126
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	3 cut(s)	199, 404, 986
MmeI	TCCRAC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	2 cut(s)	396, 978
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	5 cut(s)	85, 417, 515, 999, 1097
Mva1269I	GAATGC	3 cut(s)	196, 383, 965
MvaI	CCWGG	4 cut(s)	417, 515, 999, 1097
MvnI	CGCG	1 cut(s)	1034
MwoI	GCNNNNNNNGC	5 cut(s)	14, 178, 191, 449, 1031
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	2 cut(s)	37, 860
NlaIV	GGNNCC	2 cut(s)	113, 168
NmeAIII	GCCGAG	1 cut(s)	43
PaeR7I	CTCGAG	2 cut(s)	465, 1047
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	3 cut(s)	196, 383, 965
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	4 cut(s)	368, 428, 950, 1010
PfoI	TCCNGGA	2 cut(s)	415, 997
PkrI	GCNGC	4 cut(s)	27, 174, 177, 180
PsiI	TTATAA	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	4 cut(s)	415, 513, 997, 1095
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	4 cut(s)	415, 513, 997, 1095
PspN4I	GGNNCC	2 cut(s)	113, 168
PstNI	CAGNNNCTG	2 cut(s)	508, 1090
PvuII	CAGCTG	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	2 cut(s)	396, 978
SatI	GCNGC	4 cut(s)	26, 173, 176, 179
Sau3AI	GATC	1 cut(s)	54
ScrFI	CCNGG	5 cut(s)	85, 417, 515, 999, 1097
SduI	GDGCHC	1 cut(s)	681
Sfr274I	CTCGAG	2 cut(s)	465, 1047
SlaI	CTCGAG	2 cut(s)	465, 1047
SmlI	CTYRAG	2 cut(s)	465, 1047
SmoI	CTYRAG	2 cut(s)	465, 1047
Sse9I	AATT	3 cut(s)	199, 404, 986
SspMI	CTAG	3 cut(s)	116, 195, 219
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	5 cut(s)	83, 415, 513, 997, 1095
TaaI	ACNGT	3 cut(s)	235, 510, 1092
TaiI	ACGT	3 cut(s)	291, 708, 1131
TaqI	TCGA	4 cut(s)	269, 466, 702, 1048
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	3 cut(s)	199, 404, 986
TauI	GCSGC	2 cut(s)	175, 181
TfiI	GAWTC	4 cut(s)	368, 428, 950, 1010
Tru1I	TTAA	2 cut(s)	396, 978
Tru9I	TTAA	2 cut(s)	396, 978
TseI	GCWGC	2 cut(s)	25, 175
TspDTI	ATGAA	6 cut(s)	165, 270, 321, 450, 903, 1032
XhoI	CTCGAG	2 cut(s)	465, 1047
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	3 cut(s)	116, 195, 219
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.