Rh4BG202300

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0020738
Physical Location & Seq
Forward (+)
34676668 .. 34683017
6350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG202300.1

Sequence Viewer

Length: 621 bp
ATGGAGGCGGGGTCAGCCGAGGAGCAGCAGAGCATGGTGGCTCTGTTTATGGAGATCGTCGTCGGCCAGACCGACGAGACCGCCCGGTGGTTTTTGCAGGCTACGGGTTGGAACCTAGAGGAAGCACTTCAGCTGTTTTATGTGGGTAATGAAGCGGGGGCGATGGCTCCGCCGCAGCCGCCTGTTGAGAATGCTAGTAATTTGACTGAACAGAGTTCTAGGGTGAATGAGACTGTGGCACAATATGGTAAGGATGAAGTGTGTGCCTCGATGTCGGTTATAAGGGACGTCCTGTATGATGATGTTGCACTCTATGGGGCTGGGTTGCTTTCATCTACATCACCAATGACAAGACTTCCAGTAAGCGAATCGGGTGTGATTGCATTCCGCAACTTTAATGAGGAATTGAAACATCCTGGAGTATGGGAATCCAATGAAGGTGCTACATCCGCGACAGATAGCTCTCGAGATAATCTCGCTTCCTTGTATCGTCCTCCCTTTCAGCTACTGTTCCAGGGTTCTTTTGAAAAGTGGGCAGTAAAAAATCGGAAAGGGTATACCCGACAACAACTTGACGAGGTCAACATTGAAGTAGCCGACTACTTACAGATTCTGCTGTAG

Protein Analysis

206

Amino Acids

22.83

Weight (kDa)

4.37

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 11 - 48 2.9e-10 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020738)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003722.1_g000020
rosa_samantha Rh1AG132600 Rh1CG126500 Rh4AG425800 Rh4BG202300 Rh4CG211200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AatII GACGTC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 557
AccII CGCG 1 cut(s) 452
AciI CCGC 8 cut(s) 8, 81, 155, 170, 173, 179, 388, 450
AcoI YGGCCR 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 3 cut(s) 409, 527, 590
AjnI CCWGG 2 cut(s) 415, 513
AluBI AGCT 3 cut(s) 133, 462, 505
AluI AGCT 3 cut(s) 133, 462, 505
Alw26I GTCTC 2 cut(s) 71, 224
AlwNI CAGNNNCTG 2 cut(s) 508, 613
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 25, 175
Asp700I GAANNNNTTC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 235, 333
AvaI CYCGRG 1 cut(s) 465
BbvI GCAGC 2 cut(s) 37, 187
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 2 cut(s) 417, 515
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 71, 224
BfaI CTAG 3 cut(s) 116, 195, 219
BfmI CTRYAG 1 cut(s) 617
BisI GCNGC 4 cut(s) 26, 173, 176, 179
BlsI GCNGC 4 cut(s) 27, 174, 177, 180
Bme1390I CCNGG 3 cut(s) 85, 417, 515
BmeT110I CYCGRG 1 cut(s) 465
BmiI GGNNCC 2 cut(s) 113, 168
BmrFI CCNGG 3 cut(s) 85, 417, 515
BplI GAGNNNNNCTC 2 cut(s) 459, 491
BpmI CTGGAG 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 18, 514
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 417, 515
BseDI CCNNGG 2 cut(s) 18, 514
BseGI GGATG 3 cut(s) 259, 412, 446
BseLI CCNNNNNNNGG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 37, 187
BseYI CCCAGC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 2 cut(s) 71, 224
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 2 cut(s) 196, 383
BsnI GGCC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 465
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 8 cut(s) 8, 81, 155, 170, 173, 179, 388, 450
BspANI GGCC 1 cut(s) 66
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 2 cut(s) 113, 168
BspTNI GGTCTC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 18, 514
BssMI GATC 1 cut(s) 54
BssNAI GTATAC 1 cut(s) 558
BssNI GRCGYC 1 cut(s) 288
Bst1107I GTATAC 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 417, 515
Bst4CI ACNGT 2 cut(s) 235, 510
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 3 cut(s) 259, 412, 446
BstFNI CGCG 1 cut(s) 452
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 71, 224
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 14, 178, 449
BstNI CCWGG 2 cut(s) 417, 515
BstSCI CCNGG 3 cut(s) 83, 415, 513
BstSFI CTRYAG 1 cut(s) 617
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 37, 187
BstZ17I GTATAC 1 cut(s) 558
BsuRI GGCC 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 176
BtsCI GGATG 3 cut(s) 259, 412, 446
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 2 cut(s) 508, 613
CviAII CATG 1 cut(s) 34
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 64
EciI GGCGGA 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 415, 513
FaeI CATG 1 cut(s) 37
FaiI YATR 9 cut(s) 35, 50, 141, 246, 281, 297, 315, 424, 558
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 148
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 4 cut(s) 26, 173, 176, 179
FokI GGATG 3 cut(s) 266, 399, 433
Fsp4HI GCNGC 4 cut(s) 26, 173, 176, 179
FspBI CTAG 3 cut(s) 116, 195, 219
GluI GCNGC 4 cut(s) 26, 173, 176, 179
GsaI CCCAGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 1 cut(s) 37
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 3 cut(s) 368, 428, 610
HpaII CCGG 1 cut(s) 85
HphI GGTGA 2 cut(s) 235, 333
Hpy166II GTNNAC 2 cut(s) 558, 583
Hpy188I TCNGA 1 cut(s) 549
Hpy188III TCNNGA 2 cut(s) 465, 467
Hpy8I GTNNAC 2 cut(s) 558, 583
Hpy99I CGWCG 3 cut(s) 62, 65, 77
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 2 cut(s) 235, 510
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 97, 308, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 178, 449
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 22, 172
Lsp1109I GCAGC 2 cut(s) 37, 187
MaeI CTAG 3 cut(s) 116, 195, 219
MaeII ACGT 1 cut(s) 288
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MluCI AATT 2 cut(s) 199, 404
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 6 cut(s) 13, 112, 277, 394, 504, 571
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 3 cut(s) 85, 417, 515
Mva1269I GAATGC 2 cut(s) 196, 383
MvaI CCWGG 2 cut(s) 417, 515
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 14, 178, 449
NciI CCSGG 1 cut(s) 85
NdeII GATC 1 cut(s) 54
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 2 cut(s) 113, 168
NmeAIII GCCGAG 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 2 cut(s) 196, 383
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 368, 428, 610
PflFI GACNNNGTC 1 cut(s) 578
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 4 cut(s) 27, 174, 177, 180
PsiI TTATAA 1 cut(s) 281
Psp6I CCWGG 2 cut(s) 415, 513
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 2 cut(s) 415, 513
PspN4I GGNNCC 2 cut(s) 113, 168
PstNI CAGNNNCTG 2 cut(s) 508, 613
PsyI GACNNNGTC 1 cut(s) 578
PvuII CAGCTG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 4 cut(s) 26, 173, 176, 179
Sau3AI GATC 1 cut(s) 54
ScrFI CCNGG 3 cut(s) 85, 417, 515
SetI ASST 7 cut(s) 117, 135, 291, 442, 464, 507, 582
SfcI CTRYAG 1 cut(s) 617
Sfr274I CTCGAG 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 2 cut(s) 199, 404
SsiI CCGC 8 cut(s) 8, 81, 155, 170, 173, 179, 388, 450
SspMI CTAG 3 cut(s) 116, 195, 219
StyD4I CCNGG 3 cut(s) 83, 415, 513
TaaI ACNGT 2 cut(s) 235, 510
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 269, 466
TaqII GACCGA 1 cut(s) 86
TasI AATT 2 cut(s) 199, 404
TauI GCSGC 2 cut(s) 175, 181
TfiI GAWTC 3 cut(s) 368, 428, 610
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TseI GCWGC 2 cut(s) 25, 175
TspDTI ATGAA 4 cut(s) 165, 270, 321, 450
Tth111I GACNNNGTC 1 cut(s) 578
XhoI CTCGAG 1 cut(s) 465
XmiI GTMKAC 1 cut(s) 557
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 3 cut(s) 116, 195, 219
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.