Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0020738

Physical Location & Seq

Genomic Coordinates Reverse (-)

44076596 .. 44077363

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGACGAGACGCCTCGCCACTGCTAAATTCGACGGATTCTACCGCCACCGGCAAATGTGCACTATTAAGCCCTTTTTGGGACGCGAAGCCACCGTTGTGCCAAAGATGGAGGCTGCGTCAGCCGAGGAGCAGCAGAGCATGGTGGCTCTGTTCATGGAGATCACTGCTGGCCAGACCGACGAGACCGCCGCTCGACGACGCATTTGCCCCGAACCGAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0030674 GO:0032182 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0060090 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_7 UBA_4 UBX

Protein Analysis

74

Amino Acids

8.45

Weight (kDa)

9.3

Isoelectric Point (pI)

78.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020738)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003722.1_g000020
rosa_samantha	Rh1AG132600 Rh1CG126500 Rh4AG425800 Rh4BG202300 Rh4CG211200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	191
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	43, 186, 189
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	77, 216
AleI	CACNNNNGTG	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	176
Alw44I	GTGCAC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	169
ApaLI	GTGCAC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	113, 130
ApoI	RAATTY	1 cut(s)	26
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
BaeGI	GKGCMC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	100, 142
BccI	CCATC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BcoDI	GTCTC	1 cut(s)	176
BisI	GCNGC	3 cut(s)	114, 131, 189
BlsI	GCNGC	3 cut(s)	115, 132, 190
BsaHI	GRCGYC	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	123, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 216
Bse118I	RCCGGY	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	123, 215
BseLI	CCNNNNNNNGG	2 cut(s)	77, 216
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	100, 142
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	77, 216
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	159, 219
BspACI	CCGC	3 cut(s)	43, 186, 189
BspANI	GGCC	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	123, 215
BssMI	GATC	2 cut(s)	159, 219
BssNI	GRCGYC	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	2 cut(s)	162, 222
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	159, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	62
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	100, 142
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	171
BtsI	GCAGTG	2 cut(s)	18, 162
BtsIMutI	CAGTG	2 cut(s)	18, 162
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	48
CseI	GACGC	4 cut(s)	18, 90, 105, 207
CviAII	CATG	2 cut(s)	139, 154
CviJI	RGCY	6 cut(s)	70, 89, 113, 122, 146, 171
CviKI_1	RGCY	6 cut(s)	70, 89, 113, 122, 146, 171
DpnI	GATC	2 cut(s)	161, 221
DpnII	GATC	2 cut(s)	159, 219
EaeI	YGGCCR	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	142, 157
FaiI	YATR	2 cut(s)	140, 155
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	138, 153
Fnu4HI	GCNGC	3 cut(s)	114, 131, 189
Fsp4HI	GCNGC	3 cut(s)	114, 131, 189
GluI	GCNGC	3 cut(s)	114, 131, 189
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	4 cut(s)	18, 90, 105, 207
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	142, 157
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	4 cut(s)	35, 182, 198, 201
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	142, 157
Kzo9I	GATC	2 cut(s)	159, 219
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	3 cut(s)	62, 153, 185
Lsp1109I	GCAGC	2 cut(s)	100, 142
MalI	GATC	2 cut(s)	161, 221
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	2 cut(s)	159, 219
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	171
MnlI	CCTC	4 cut(s)	23, 103, 118, 210
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	159, 219
NlaIII	CATG	2 cut(s)	142, 157
NmeAIII	GCCGAG	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	115, 132, 190
PsuI	RGATCY	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	3 cut(s)	114, 131, 189
Sau3AI	GATC	2 cut(s)	159, 219
SduI	GDGCHC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	3 cut(s)	43, 186, 189
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	30, 193
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	1 cut(s)	26
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	25, 169
TseI	GCWGC	2 cut(s)	113, 130
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	25, 169
VneI	GTGCAC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.