Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0020738

Physical Location & Seq

Genomic Coordinates Forward (+)

72228964 .. 72230002

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAAAACAATAAACGGAAGAAGAGCAAAATCTCAGACGGAGGAGCAGAAGAAGCAAAACCCGTCGCCAAAGTCCCCAAAACGAGCAAGCCGGAGATGGAGGCGGGGTCAGCCGAGGAGCAGCAGAGCATGGTGGCTCTGTTTATGGAGATCGCCGCTGGCCAGACCGACGAGACCGCCCGGCGGTTTTTGCAGGCTACGGGTTGGAACCTAGAGGAAGCACTTCAGCTGTTTTATGTGGGTAATGAAGCGGGGGCGATGGCTCCGCCGCAGCCGCCGGCTGAGAATGCTAGTAATTTGGCTGAACAGAGTTCTGGGGTGGATGAGAATGTGGCACAATATGGTGAGGATGAAGTGCGTGCCCCCATGCCGGTTATAAGGGACGTCCTGTATGATGATGTTGCACTCTATGGGGCTGGGTATGTGCTCCCACTCTATTTGAGCTGGGTTTTTCTGAATTGGAAAGCTTTGTATTCAATCCTGTTATTGTGGGGCAATGCTACTTTCTGTGGATACTGCATTAAGAGAAAAGGAAATCGCATGGTAGTTCATTATTCTTTCATGGTTTTTCCTTTATCAACGAATGCCACATGTGGAATAGTAGTAATGGAGTCTGTGAGAATGTGTACACCGTACAGTTATGTAACTAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0030674 GO:0032182 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0060090 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_7 UBA_4 UBX

Protein Analysis

218

Amino Acids

24.14

Weight (kDa)

5.18

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_8	PF22566	40 - 83	3.2e-07	UBA-like domain
UBA_4	PF14555	43 - 80	4.2e-12	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020738)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003722.1_g000020
rosa_samantha	Rh1AG132600 Rh1CG126500 Rh4AG425800 Rh4BG202300 Rh4CG211200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AatII	GACGTC	1 cut(s)	387
AciI	CCGC	8 cut(s)	104, 156, 177, 184, 251, 266, 269, 275
AcoI	YGGCCR	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	628, 635
AfiI	CCNNNNNNNGG	2 cut(s)	183, 370
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	1 cut(s)	477
AluBI	AGCT	3 cut(s)	229, 444, 467
AluI	AGCT	3 cut(s)	229, 444, 467
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	121, 271
Asp700I	GAANNNNTTC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	133, 283
BccI	CCATC	2 cut(s)	91, 253
BciVI	GTATCC	1 cut(s)	506
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	212, 291
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	5 cut(s)	122, 156, 269, 272, 275
BlsI	GCNGC	5 cut(s)	123, 157, 270, 273, 276
Bme1390I	CCNGG	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	209, 264
BmrFI	CCNGG	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 370
Bse118I	RCCGGY	2 cut(s)	277, 370
Bse3DI	GCAATG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	328, 355
BseLI	CCNNNNNNNGG	2 cut(s)	183, 370
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	48, 273
BseRI	GAGGAG	2 cut(s)	57, 131
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	133, 283
BseYI	CCCAGC	2 cut(s)	416, 444
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	4 cut(s)	92, 181, 278, 371
BslFI	GGGAC	2 cut(s)	59, 395
BslI	CCNNNNNNNGG	2 cut(s)	183, 370
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	59, 395
BsmI	GAATGC	2 cut(s)	292, 589
BsnI	GGCC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	364, 429
Bsp1407I	TGTACA	1 cut(s)	626
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	8 cut(s)	104, 156, 177, 184, 251, 266, 269, 275
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	47, 274
BspLI	GGNNCC	2 cut(s)	209, 264
BspQI	GCTCTTC	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	2 cut(s)	277, 370
BsrGI	TGTACA	1 cut(s)	626
BssAI	RCCGGY	2 cut(s)	277, 370
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	150
BssNI	GRCGYC	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	633, 638
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	384
BstAUI	TGTACA	1 cut(s)	626
BstC8I	GCNNGC	5 cut(s)	89, 160, 195, 279, 360
BstDEI	CTNAG	2 cut(s)	34, 282
BstF5I	GGATG	2 cut(s)	328, 355
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 110, 190, 274, 287
BstNSI	RCATGY	1 cut(s)	594
BstSCI	CCNGG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	133, 283
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	328, 355
Cac8I	GCNNGC	5 cut(s)	89, 160, 195, 279, 360
Cfr10I	RCCGGY	2 cut(s)	277, 370
Csp6I	GTAC	2 cut(s)	627, 634
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	5 cut(s)	130, 367, 541, 562, 591
CviQI	GTAC	2 cut(s)	627, 634
DdeI	CTNAG	2 cut(s)	34, 282
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	209
FaeI	CATG	5 cut(s)	133, 370, 544, 565, 594
FaqI	GGGAC	2 cut(s)	59, 395
FatI	CATG	5 cut(s)	129, 366, 540, 561, 590
FauI	CCCGC	2 cut(s)	97, 244
Fnu4HI	GCNGC	5 cut(s)	122, 156, 269, 272, 275
FokI	GGATG	2 cut(s)	335, 362
Fsp4HI	GCNGC	5 cut(s)	122, 156, 269, 272, 275
FspBI	CTAG	2 cut(s)	212, 291
GluI	GCNGC	5 cut(s)	122, 156, 269, 272, 275
GsaI	CCCAGC	2 cut(s)	420, 448
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	4 cut(s)	92, 181, 278, 371
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	5 cut(s)	133, 370, 544, 565, 594
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	4 cut(s)	92, 181, 278, 371
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	627, 629
Hpy188I	TCNGA	2 cut(s)	37, 456
Hpy8I	GTNNAC	2 cut(s)	627, 629
Hpy99I	CGWCG	2 cut(s)	68, 173
HpyCH4III	ACNGT	2 cut(s)	633, 638
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	193, 404, 519
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 110, 190, 274, 287
HpyF3I	CTNAG	2 cut(s)	34, 282
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	5 cut(s)	133, 370, 544, 565, 594
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	150
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	4 cut(s)	44, 118, 268, 432
Lsp1109I	GCAGC	2 cut(s)	133, 283
MaeI	CTAG	2 cut(s)	212, 291
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	3 cut(s)	31, 34, 62
MhlI	GDGCHC	2 cut(s)	364, 429
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	3 cut(s)	295, 457, 649
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	35, 94, 109, 208, 340
Mox20I	TGGCCA	1 cut(s)	162
MroNI	GCCGGC	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	158, 229
MspI	CCGG	4 cut(s)	92, 181, 278, 371
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	2 cut(s)	292, 589
MwoI	GCNNNNNNNGC	5 cut(s)	53, 110, 190, 274, 287
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	150
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	5 cut(s)	133, 370, 544, 565, 594
NlaIV	GGNNCC	2 cut(s)	209, 264
NmeAIII	GCCGAG	1 cut(s)	139
NspI	RCATGY	1 cut(s)	594
PciI	ACATGT	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	17
PctI	GAATGC	2 cut(s)	292, 589
PdiI	GCCGGC	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	222
PkrI	GCNGC	5 cut(s)	123, 157, 270, 273, 276
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PscI	ACATGT	1 cut(s)	590
PsiI	TTATAA	1 cut(s)	377
PspFI	CCCAGC	2 cut(s)	416, 444
PspN4I	GGNNCC	2 cut(s)	209, 264
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	2 cut(s)	628, 635
RsaNI	GTAC	2 cut(s)	627, 634
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	5 cut(s)	122, 156, 269, 272, 275
Sau3AI	GATC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	2 cut(s)	364, 429
SetI	ASST	5 cut(s)	213, 231, 387, 446, 469
Sse9I	AATT	3 cut(s)	295, 457, 649
SsiI	CCGC	8 cut(s)	104, 156, 177, 184, 251, 266, 269, 275
SspMI	CTAG	2 cut(s)	212, 291
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	633, 638
TaiI	ACGT	1 cut(s)	387
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	295, 457, 649
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	3 cut(s)	158, 271, 277
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TseI	GCWGC	2 cut(s)	121, 271
TspDTI	ATGAA	5 cut(s)	17, 261, 366, 539, 550
TspGWI	ACGGA	2 cut(s)	31, 54
XceI	RCATGY	1 cut(s)	594
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	2 cut(s)	212, 291
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.