Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020738

Physical Location & Seq

Genomic Coordinates Forward (+)

25347255 .. 25349978

Gene Structure 2724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG132600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGGCGGGGTCAGCCGAGGAGCAGCAGAGCATGGTGGCTCTGTTTATGGAGATCGCCGCCGGCCAGACCGACGAGACCGCCCGGCGGTTTTTGCAGGCTACGGGTTGGAACCTAGAGGAAGCACTTCAGCTGTTTTATGTGGGTAATGAAGCGGAGGCGATGGCTCCGCCGCAGCCGCCGGCTGAGAATGCTAGTAATTTGACTGAACAGAGTTCTGGGGTGAATGAGAATGTGGCACAATATGGTGAGGATAAAGTGTGTGCCCCGATGCCGGTTATAAGGGCGTCCTGTATGATGATGTTGCACTCTATGGGGCTGGGTATGTGTTCCCACTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0030674 GO:0032182 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0060090 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_7 UBA_4 UBX

Protein Analysis

114

Amino Acids

12.29

Weight (kDa)

4.24

Isoelectric Point (pI)

68.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_8	PF22566	8 - 51	8.4e-08	UBA-like domain
UBA_4	PF14555	11 - 48	1.3e-12	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020738)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003722.1_g000020
rosa_samantha	Rh1AG132600 Rh1CG126500 Rh4AG425800 Rh4BG202300 Rh4CG211200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AciI	CCGC	8 cut(s)	8, 60, 81, 88, 155, 170, 173, 179
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	87, 274
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	25, 175
Asp700I	GAANNNNTTC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	235, 260
BaeGI	GKGCMC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	37, 187
BccI	CCATC	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	116, 195
BisI	GCNGC	5 cut(s)	26, 60, 173, 176, 179
BlsI	GCNGC	5 cut(s)	27, 61, 174, 177, 180
Bme1390I	CCNGG	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	113, 168
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 274
Bse118I	RCCGGY	3 cut(s)	62, 181, 274
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	87, 274
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	37, 187
BseYI	CCCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	4 cut(s)	63, 85, 182, 275
BslI	CCNNNNNNNGG	2 cut(s)	87, 274
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	8 cut(s)	8, 60, 81, 88, 155, 170, 173, 179
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	113, 168
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	3 cut(s)	62, 181, 274
BssAI	RCCGGY	3 cut(s)	62, 181, 274
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	64, 99, 183
BstDEI	CTNAG	1 cut(s)	186
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 94, 178, 191
BstSCI	CCNGG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	37, 187
BsuRI	GGCC	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	176
Cac8I	GCNNGC	3 cut(s)	64, 99, 183
Cfr10I	RCCGGY	3 cut(s)	62, 181, 274
CseI	GACGC	1 cut(s)	276
CspCI	CAANNNNNGTGG	1 cut(s)	323
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	9 cut(s)	17, 41, 66, 101, 133, 167, 178, 185, 319
CviKI_1	RGCY	9 cut(s)	17, 41, 66, 101, 133, 167, 178, 185, 319
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	113
FaeI	CATG	1 cut(s)	37
FaiI	YATR	8 cut(s)	35, 50, 141, 246, 281, 296, 314, 326
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	5 cut(s)	26, 60, 173, 176, 179
Fsp4HI	GCNGC	5 cut(s)	26, 60, 173, 176, 179
FspBI	CTAG	2 cut(s)	116, 195
GluI	GCNGC	5 cut(s)	26, 60, 173, 176, 179
GsaI	CCCAGC	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	4 cut(s)	63, 85, 182, 275
HgaI	GACGC	1 cut(s)	276
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	37
HpaII	CCGG	4 cut(s)	63, 85, 182, 275
HphI	GGTGA	2 cut(s)	235, 260
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	97, 307
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 94, 178, 191
HpyF3I	CTNAG	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	37
KroI	GCCGGC	2 cut(s)	62, 181
KroNI	GCCGGC	2 cut(s)	64, 183
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	2 cut(s)	22, 172
LpnPI	CCDG	9 cut(s)	76, 80, 83, 98, 195, 204, 288, 304, 305
Lsp1109I	GCAGC	2 cut(s)	37, 187
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	2 cut(s)	116, 195
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	4 cut(s)	13, 112, 151, 244
MroNI	GCCGGC	2 cut(s)	62, 181
MroXI	GAANNNNTTC	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	4 cut(s)	63, 85, 182, 275
MspR9I	CCNGG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	14, 94, 178, 191
NaeI	GCCGGC	2 cut(s)	64, 183
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	54
NgoMIV	GCCGGC	2 cut(s)	62, 181
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	113, 168
NmeAIII	GCCGAG	1 cut(s)	43
PctI	GAATGC	1 cut(s)	196
PdiI	GCCGGC	2 cut(s)	64, 183
PdmI	GAANNNNTTC	1 cut(s)	126
PkrI	GCNGC	5 cut(s)	27, 61, 174, 177, 180
PsiI	TTATAA	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	113, 168
PvuII	CAGCTG	1 cut(s)	133
SatI	GCNGC	5 cut(s)	26, 60, 173, 176, 179
Sau3AI	GATC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	2 cut(s)	117, 135
SfaNI	GCATC	1 cut(s)	261
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	8 cut(s)	8, 60, 81, 88, 155, 170, 173, 179
SspMI	CTAG	2 cut(s)	116, 195
StyD4I	CCNGG	1 cut(s)	83
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	199
TauI	GCSGC	3 cut(s)	62, 175, 181
TseI	GCWGC	2 cut(s)	25, 175
TspDTI	ATGAA	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	2 cut(s)	116, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.