Rmu_sc0003722.1_g000020

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003722.1
OG0020738
Physical Location & Seq
Forward (+)
102349 .. 106436
4088 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1149 bp
atggaggcggggtcagccgaggagcagcagagcatggtggctctgtttatggagatcgtcgtcggccagaccgacgagaccgcccggtggtttttgcaggctacgggttggaacctagaggaagcacttcagctgttttatgtgggtaatgaagcgggggcgatggctccgccgcagccgcctgctgagaatgctagtaatttgactgaacagagttctagggtgaatgagactgtggcacaatatggtaaggatgaagtgtgtgcctcgatgtcggttataagggacgtcctgtatgatgatgttgcactctatggggctgggttgctttcatctacatcaccaatgacaagacttccagtaaacgaatcgggtgtgattgcattccgcaactttaatgaggaattgaaacatcctggagtatgggaatcaaatgaaggtgctacatccgcaacagatagctctcgagataatctcgcttccttgtatcgtcctccctttcagctactgttccagggttcttttgaaaaggtggtggaagcccaacatcaggtggaggaagcccaacatcaggtgaaggaagtccgagacgagactatcagcttcacccaacaaggagcttggaagcccaacatcaggaagtccgagaggagactatcagcttcacccaacaaggagctcaacatcaggtggaggaagctcgacgtgaggccatcagttccacccaacaaggagcttgaaagcccaacatcaggtggaggaagcccaacatcaggtgaaggaagtccgagacgagactatcagcttcacccaacaaggagcttggaagcccaacatcaggtggaggaagcccgacatgaggccatcagttccacccaagaaaggagcttggaagccaacatcaggttgctttcatctacatcaccaatgacaagacttccagtaagcgaatcgggtgtgattgcattccgcaactttaatgaggaattgaaacatcctggagtatgggaatcaaatgaaggtgctacatccgcgacagatagctctcgagataatctcgcttccttgtatcgtcctccctttcagctactgttccagggttcttttgaaaaggtgtggtattttgacgttatcttccttgctttgtag

Protein Analysis

382

Amino Acids

42.55

Weight (kDa)

4.93

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 11 - 48 7.2e-10 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020738)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003722.1_g000020
rosa_samantha Rh1AG132600 Rh1CG126500 Rh4AG425800 Rh4BG202300 Rh4CG211200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AatII GACGTC 1 cut(s) 291
AccII CGCG 1 cut(s) 1034
AcoI YGGCCR 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 288
AgsI TTSAA 5 cut(s) 409, 527, 740, 991, 1109
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 4 cut(s) 415, 513, 997, 1095
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 7 cut(s) 71, 224, 582, 587, 646, 784, 789
AlwNI CAGNNNCTG 2 cut(s) 508, 1090
Ama87I CYCGRG 2 cut(s) 465, 1047
AoxI GGCC 3 cut(s) 64, 710, 861
ApeKI GCWGC 2 cut(s) 25, 175
Asp700I GAANNNNTTC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 8 cut(s) 235, 333, 586, 598, 657, 788, 800, 915
AvaI CYCGRG 2 cut(s) 465, 1047
BanII GRGCYC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 2 cut(s) 37, 187
BccI CCATC 3 cut(s) 157, 721, 872
BciT130I CCWGG 4 cut(s) 417, 515, 999, 1097
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 7 cut(s) 71, 224, 582, 587, 646, 784, 789
BfaI CTAG 3 cut(s) 116, 195, 219
BisI GCNGC 4 cut(s) 26, 173, 176, 179
BlsI GCNGC 4 cut(s) 27, 174, 177, 180
Bme1390I CCNGG 5 cut(s) 85, 417, 515, 999, 1097
BmeT110I CYCGRG 2 cut(s) 465, 1047
BmgBI CACGTC 1 cut(s) 706
BmiI GGNNCC 2 cut(s) 113, 168
BmrFI CCNGG 5 cut(s) 85, 417, 515, 999, 1097
BplI GAGNNNNNCTC 4 cut(s) 459, 491, 1041, 1073
BpmI CTGGAG 2 cut(s) 438, 1020
BpuMI CCSGG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 18, 514, 1096
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 359, 941
BseBI CCWGG 4 cut(s) 417, 515, 999, 1097
BseDI CCNNGG 3 cut(s) 18, 514, 1096
BseGI GGATG 5 cut(s) 259, 412, 446, 994, 1028
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 359, 941
BseRI GAGGAG 2 cut(s) 35, 664
BseXI GCAGC 2 cut(s) 37, 187
BseYI CCCAGC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 1034
BshFI GGCC 3 cut(s) 66, 712, 863
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 2 cut(s) 465, 1047
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 299
BsmAI GTCTC 7 cut(s) 71, 224, 582, 587, 646, 784, 789
BsmBI CGTCTC 2 cut(s) 582, 784
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 3 cut(s) 196, 383, 965
BsnI GGCC 3 cut(s) 66, 712, 863
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 2 cut(s) 465, 1047
Bsp1286I GDGCHC 1 cut(s) 681
Bsp143I GATC 1 cut(s) 54
BspANI GGCC 3 cut(s) 66, 712, 863
BspCNI CTCAG 1 cut(s) 178
BspFNI CGCG 1 cut(s) 1034
BspLI GGNNCC 2 cut(s) 113, 168
BspTNI GGTCTC 1 cut(s) 71
BsrI ACTGG 2 cut(s) 359, 941
BssECI CCNNGG 3 cut(s) 18, 514, 1096
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 288
Bst2UI CCWGG 4 cut(s) 417, 515, 999, 1097
Bst4CI ACNGT 3 cut(s) 235, 510, 1092
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 99, 183
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 5 cut(s) 259, 412, 446, 994, 1028
BstFNI CGCG 1 cut(s) 1034
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 7 cut(s) 71, 224, 582, 587, 646, 784, 789
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 5 cut(s) 14, 178, 191, 449, 1031
BstNI CCWGG 4 cut(s) 417, 515, 999, 1097
BstSCI CCNGG 5 cut(s) 83, 415, 513, 997, 1095
BstUI CGCG 1 cut(s) 1034
BstV1I GCAGC 2 cut(s) 37, 187
BsuRI GGCC 3 cut(s) 66, 712, 863
BtgZI GCGATG 1 cut(s) 176
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 5 cut(s) 259, 412, 446, 994, 1028
Cac8I GCNNGC 2 cut(s) 99, 183
CaiI CAGNNNCTG 2 cut(s) 508, 1090
CviAII CATG 2 cut(s) 34, 857
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 64
EciI GGCGGA 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 679
Eco24I GRGCYC 1 cut(s) 681
Eco31I GGTCTC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 2 cut(s) 465, 1047
EcoICRI GAGCTC 1 cut(s) 679
EcoRII CCWGG 4 cut(s) 415, 513, 997, 1095
EcoT38I GRGCYC 1 cut(s) 681
Esp3I CGTCTC 2 cut(s) 582, 784
FaeI CATG 2 cut(s) 37, 860
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 33, 856
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 26, 173, 176, 179
FokI GGATG 5 cut(s) 266, 399, 433, 981, 1015
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 4 cut(s) 26, 173, 176, 179
FspBI CTAG 3 cut(s) 116, 195, 219
GluI GCNGC 4 cut(s) 26, 173, 176, 179
GsaI CCCAGC 1 cut(s) 324
GsuI CTGGAG 2 cut(s) 438, 1020
HaeIII GGCC 3 cut(s) 66, 712, 863
HapII CCGG 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 2 cut(s) 37, 860
HinfI GANTC 4 cut(s) 368, 428, 950, 1010
HpaII CCGG 1 cut(s) 85
HphI GGTGA 8 cut(s) 235, 333, 586, 598, 657, 788, 800, 915
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 3 cut(s) 587, 646, 789
Hpy188III TCNNGA 5 cut(s) 465, 467, 637, 1047, 1049
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 4 cut(s) 62, 65, 77, 707
HpyAV CCTTC 4 cut(s) 431, 571, 773, 1013
HpyCH4III ACNGT 3 cut(s) 235, 510, 1092
HpyCH4IV ACGT 3 cut(s) 288, 705, 1128
HpyCH4V TGCA 4 cut(s) 97, 308, 383, 965
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 178, 191, 449, 1031
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 3 cut(s) 288, 705, 1128
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 2 cut(s) 37, 860
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 7 cut(s) 22, 172, 617, 676, 733, 819, 885
Lsp1109I GCAGC 2 cut(s) 37, 187
MaeI CTAG 3 cut(s) 116, 195, 219
MaeII ACGT 3 cut(s) 288, 705, 1128
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 1126
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 3 cut(s) 199, 404, 986
MmeI TCCRAC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 2 cut(s) 396, 978
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 5 cut(s) 85, 417, 515, 999, 1097
Mva1269I GAATGC 3 cut(s) 196, 383, 965
MvaI CCWGG 4 cut(s) 417, 515, 999, 1097
MvnI CGCG 1 cut(s) 1034
MwoI GCNNNNNNNGC 5 cut(s) 14, 178, 191, 449, 1031
NciI CCSGG 1 cut(s) 85
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 37, 860
NlaIV GGNNCC 2 cut(s) 113, 168
NmeAIII GCCGAG 1 cut(s) 43
PaeR7I CTCGAG 2 cut(s) 465, 1047
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 3 cut(s) 196, 383, 965
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 4 cut(s) 368, 428, 950, 1010
PfoI TCCNGGA 2 cut(s) 415, 997
PkrI GCNGC 4 cut(s) 27, 174, 177, 180
PsiI TTATAA 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 4 cut(s) 415, 513, 997, 1095
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 4 cut(s) 415, 513, 997, 1095
PspN4I GGNNCC 2 cut(s) 113, 168
PstNI CAGNNNCTG 2 cut(s) 508, 1090
PvuII CAGCTG 1 cut(s) 133
SacI GAGCTC 1 cut(s) 681
SaqAI TTAA 2 cut(s) 396, 978
SatI GCNGC 4 cut(s) 26, 173, 176, 179
Sau3AI GATC 1 cut(s) 54
ScrFI CCNGG 5 cut(s) 85, 417, 515, 999, 1097
SduI GDGCHC 1 cut(s) 681
Sfr274I CTCGAG 2 cut(s) 465, 1047
SlaI CTCGAG 2 cut(s) 465, 1047
SmlI CTYRAG 2 cut(s) 465, 1047
SmoI CTYRAG 2 cut(s) 465, 1047
Sse9I AATT 3 cut(s) 199, 404, 986
SspMI CTAG 3 cut(s) 116, 195, 219
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 5 cut(s) 83, 415, 513, 997, 1095
TaaI ACNGT 3 cut(s) 235, 510, 1092
TaiI ACGT 3 cut(s) 291, 708, 1131
TaqI TCGA 4 cut(s) 269, 466, 702, 1048
TaqII GACCGA 1 cut(s) 86
TasI AATT 3 cut(s) 199, 404, 986
TauI GCSGC 2 cut(s) 175, 181
TfiI GAWTC 4 cut(s) 368, 428, 950, 1010
Tru1I TTAA 2 cut(s) 396, 978
Tru9I TTAA 2 cut(s) 396, 978
TseI GCWGC 2 cut(s) 25, 175
TspDTI ATGAA 6 cut(s) 165, 270, 321, 450, 903, 1032
XhoI CTCGAG 2 cut(s) 465, 1047
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 3 cut(s) 116, 195, 219
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.