Rmu_sc0003801.1_g000024

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003801.1
OG0019818
Physical Location & Seq
Forward (+)
81826 .. 82404
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003801.1_g000024.1.cds

Sequence Viewer

Length: 579 bp
atgcttcttatgaaactcacattagtcttattagcagctgcaacgacattgctagctgcagcagctggtaaacccctcccaccgcctcaagccaagcccaactgcgcagaccgctgtggtgacctcacaattccatatccatttgggatcggtgacggctgttacatactactgaagggacagcaaaagcaattcgaactcacttgtgatgattccactaaacccccaacactgcactggaagcactacgaagacctcagtgtcactgattttaatgttactgagggtgagttggaatctatgaattttataagcaaggattcttacgacaagagcggctctaatgtggagaacagtcctttgctccgttggggtcctcctttcagcatttccggtcccaaaaacaggttcttcgccgtaggctgtgacacttctgctgttttccggggttttcgtggcgaagaagagttcatgacaggttgcatgtcagcttgtccgtgtgccccaatatcagcagcgtggatcaaaactcttgcactggtgtcgggttttgccagaccaaaatccctgaaggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK hEGF

Protein Analysis

192

Amino Acids

20.83

Weight (kDa)

6.13

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019818)

Species Orthologous Gene IDs
pyrus_communis pycom05g25280
rosa_chinensis RchiOBHm_Chr5g0016941
rosa_laevigata RLG00000032284
rosa_multiflora Rmu_sc0003630.1_g000063 Rmu_sc0003801.1_g000024 Rmu_sc0007023.1_g000008
rosa_rugosa Rorug05G0587100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AasI GACNNNNNNGTC 1 cut(s) 260
Acc16I TGCGCA 1 cut(s) 106
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 3 cut(s) 83, 112, 336
AclWI GGATC 2 cut(s) 155, 530
AcsI RAATTY 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 405
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 4 cut(s) 38, 56, 65, 491
AluI AGCT 4 cut(s) 38, 56, 65, 491
AlwI GGATC 2 cut(s) 155, 530
AlwNI CAGNNNCTG 1 cut(s) 65
ApeKI GCWGC 6 cut(s) 35, 38, 56, 59, 62, 515
ApoI RAATTY 1 cut(s) 304
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 374, 395
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 3 cut(s) 131, 164, 299
AsuII TTCGAA 1 cut(s) 195
AsuNHI GCTAGC 1 cut(s) 52
AvaII GGWCC 2 cut(s) 374, 395
BaeGI GKGCMC 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 6 cut(s) 25, 43, 47, 71, 74, 527
BceAI ACGGC 2 cut(s) 172, 401
BcgI CGANNNNNNTGC 2 cut(s) 525, 559
BcnI CCSGG 1 cut(s) 446
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 7 cut(s) 36, 39, 57, 60, 63, 337, 516
BlsI GCNGC 7 cut(s) 37, 40, 58, 61, 64, 338, 517
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 2 cut(s) 374, 395
BmgT120I GGNCC 2 cut(s) 374, 395
BmiI GGNNCC 2 cut(s) 375, 397
BmrFI CCNGG 1 cut(s) 446
BmtI GCTAGC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 242, 543
Bse3DI GCAATG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 271, 273
BseNI ACTGG 2 cut(s) 242, 543
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 6 cut(s) 25, 43, 47, 71, 74, 527
BsgI GTGCAG 1 cut(s) 218
BsiSI CCGG 2 cut(s) 393, 445
BslFI GGGAC 2 cut(s) 192, 381
BslI CCNNNNNNNGG 1 cut(s) 405
BsmFI GGGAC 2 cut(s) 192, 381
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 2 cut(s) 147, 522
BspACI CCGC 3 cut(s) 83, 112, 336
BspCNI CTCAG 2 cut(s) 270, 274
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 375, 397
BspMAI CTGCAG 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 155, 530
BspT104I TTCGAA 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 47
BsrI ACTGG 2 cut(s) 242, 543
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 2 cut(s) 147, 522
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 1 cut(s) 459
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 257, 282
BstEII GGTNACC 1 cut(s) 119
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 150, 525
BstMBI GATC 2 cut(s) 147, 522
BstMWI GCNNNNNNNGC 3 cut(s) 62, 111, 241
BstNSI RCATGY 1 cut(s) 487
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 444
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 6 cut(s) 25, 43, 47, 71, 74, 527
BstV2I GAAGAC 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 5 cut(s) 230, 235, 264, 265, 536
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 471
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 374, 395
CviAII CATG 2 cut(s) 472, 484
CviJI RGCY 9 cut(s) 38, 56, 65, 92, 97, 159, 339, 423, 491
CviKI_1 RGCY 9 cut(s) 38, 56, 65, 92, 97, 159, 339, 423, 491
DdeI CTNAG 2 cut(s) 257, 282
DpnI GATC 2 cut(s) 149, 524
DpnII GATC 2 cut(s) 147, 522
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco47I GGWCC 2 cut(s) 374, 395
Eco57I CTGAAG 1 cut(s) 194
Eco91I GGTNACC 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 119
FaeI CATG 2 cut(s) 475, 487
FaiI YATR 7 cut(s) 11, 136, 167, 302, 311, 473, 485
FaqI GGGAC 2 cut(s) 192, 381
FatI CATG 2 cut(s) 471, 483
Fnu4HI GCNGC 7 cut(s) 36, 39, 57, 60, 63, 337, 516
Fsp4HI GCNGC 7 cut(s) 36, 39, 57, 60, 63, 337, 516
FspBI CTAG 1 cut(s) 53
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 1 cut(s) 106
GluI GCNGC 7 cut(s) 36, 39, 57, 60, 63, 337, 516
HapII CCGG 2 cut(s) 393, 445
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 475, 487
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 3 cut(s) 212, 296, 320
HpaII CCGG 2 cut(s) 393, 445
HphI GGTGA 3 cut(s) 131, 164, 299
Hpy166II GTNNAC 1 cut(s) 71
Hpy188III TCNNGA 1 cut(s) 472
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 169, 565
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 5 cut(s) 41, 59, 235, 483, 536
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 111, 241
HpyF3I CTNAG 2 cut(s) 257, 282
Hsp92II CATG 2 cut(s) 475, 487
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 147, 522
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 8 cut(s) 51, 223, 391, 406, 458, 462, 524, 568
Lsp1109I GCAGC 6 cut(s) 25, 43, 47, 71, 74, 527
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 6 cut(s) 119, 152, 161, 262, 277, 425
MalI GATC 2 cut(s) 149, 524
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 147, 522
MboII GAAGA 4 cut(s) 263, 403, 473, 476
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 3 cut(s) 129, 191, 304
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 86, 96, 134, 266, 277, 387
MseI TTAA 1 cut(s) 273
MspA1I CMGCKG 3 cut(s) 38, 65, 114
MspI CCGG 2 cut(s) 393, 445
MspR9I CCNGG 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 62, 111, 241
NciI CCSGG 1 cut(s) 446
NdeII GATC 2 cut(s) 147, 522
NheI GCTAGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 475, 487
NlaIV GGNNCC 2 cut(s) 375, 397
NmuCI GTSAC 4 cut(s) 119, 152, 262, 425
NsbI TGCGCA 1 cut(s) 106
NspI RCATGY 1 cut(s) 487
NspV TTCGAA 1 cut(s) 195
PagI TCATGA 1 cut(s) 471
PfeI GAWTC 3 cut(s) 212, 296, 320
PkrI GCNGC 7 cut(s) 37, 40, 58, 61, 64, 338, 517
PpuMI RGGWCCY 1 cut(s) 374
PsiI TTATAA 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 374
PspEI GGTNACC 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 375, 397
PspPI GGNCC 2 cut(s) 374, 395
PspPPI RGGWCCY 1 cut(s) 374
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 65
PvuII CAGCTG 2 cut(s) 38, 65
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 7 cut(s) 36, 39, 57, 60, 63, 337, 516
Sau3AI GATC 2 cut(s) 147, 522
Sau96I GGNCC 2 cut(s) 374, 395
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 1 cut(s) 505
SetI ASST 8 cut(s) 40, 58, 67, 126, 258, 410, 481, 493
SfcI CTRYAG 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 2 cut(s) 374, 395
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 3 cut(s) 129, 191, 304
SsiI CCGC 3 cut(s) 83, 112, 336
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 129, 191, 304
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 3 cut(s) 212, 296, 320
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 5 cut(s) 237, 242, 265, 271, 543
TseFI GTSAC 4 cut(s) 119, 152, 262, 425
TseI GCWGC 6 cut(s) 35, 38, 56, 59, 62, 515
Tsp45I GTSAC 4 cut(s) 119, 152, 262, 425
TspDTI ATGAA 3 cut(s) 26, 317, 460
TspGWI ACGGA 2 cut(s) 356, 486
TspRI CASTG 5 cut(s) 237, 242, 265, 271, 543
VpaK11BI GGWCC 2 cut(s) 374, 395
XapI RAATTY 1 cut(s) 304
XceI RCATGY 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.