Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007023.1

Orthogroup ID

OG0019818

Physical Location & Seq

Genomic Coordinates Reverse (-)

54084 .. 55781

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007023.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgggactggttgcaactcaaacgctgccacctcaagctaagccttactatctcgactggtgcggtattacactcacaagtactgacatttcacttgcggagggtgagctgcaaattatcactttcatagctaaagaatgttataacaaggaaggagagatgacgtatagcaacagcccttctctccgcgtgtctcctccttatactatctctgacaccaaaaacaaattcttcgccttcggttgcgacacttatgcacttttccaaggctaccgggacgaaaagaggttccaaacagggtgcatgtcgttatgtgacgaccgtgagagcatttcagactcttgctcaggcgttgggtgctgtgaaaatgctatccctaccggactcaaaaaccgtaccatcagccttgaaacctgcacagaacgattcgcctctctcgtgcggtcgtctctgtggcagcctcttgcggcgattcttggtggaggaagtgcagcaaggaggtgcagtttgaggatttcggaccctgtcggaaatccttattccgacgtcggcggggcttcaagtcttcttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

191

Amino Acids

20.68

Weight (kDa)

5.04

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019818)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g25280
rosa_chinensis	RchiOBHm_Chr5g0016941
rosa_laevigata	RLG00000032284
rosa_multiflora	Rmu_sc0003630.1_g000063 Rmu_sc0003801.1_g000024 Rmu_sc0007023.1_g000008
rosa_rugosa	Rorug05G0587100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
AatII	GACGTC	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	422
AccII	CGCG	1 cut(s)	189
AciI	CCGC	6 cut(s)	63, 98, 187, 442, 467, 552
AcsI	RAATTY	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	2 cut(s)	82, 397
AgsI	TTSAA	2 cut(s)	410, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	3 cut(s)	38, 109, 131
AluI	AGCT	3 cut(s)	38, 109, 131
Alw26I	GTCTC	2 cut(s)	198, 453
ApeKI	GCWGC	4 cut(s)	25, 109, 457, 491
ApoI	RAATTY	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	4 cut(s)	12, 96, 469, 503
BccI	CCATC	1 cut(s)	407
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	198, 453
BfuAI	ACCTGC	1 cut(s)	422
BisI	GCNGC	5 cut(s)	26, 110, 458, 468, 492
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	5 cut(s)	27, 111, 459, 469, 493
BmcAI	AGTACT	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	2 cut(s)	290, 522
BmrFI	CCNGG	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bse1I	ACTGG	2 cut(s)	12, 62
BseDI	CCNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	12, 62
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	4 cut(s)	12, 96, 469, 503
BsgI	GTGCAG	3 cut(s)	400, 510, 523
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	2 cut(s)	322, 446
BsiEI	CGRYCG	2 cut(s)	322, 446
BsiSI	CCGG	2 cut(s)	274, 381
BslFI	GGGAC	2 cut(s)	18, 290
BsmAI	GTCTC	2 cut(s)	198, 453
BsmBI	CGTCTC	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	18, 290
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	6 cut(s)	63, 98, 187, 442, 467, 552
BspCNI	CTCAG	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	290, 522
BspMI	ACCTGC	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	12, 62
BssECI	CCNNGG	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	546
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	437
Bst4CI	ACNGT	2 cut(s)	323, 395
BstACI	GRCGYC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	39, 346
BstFNI	CGCG	1 cut(s)	189
BstMAI	GTCTC	2 cut(s)	198, 453
BstMCI	CGRYCG	2 cut(s)	322, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	12, 96, 469, 503
BstV2I	GAAGAC	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	81, 396
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	9 cut(s)	38, 43, 109, 131, 177, 270, 405, 460, 557
CviKI_1	RGCY	9 cut(s)	38, 43, 109, 131, 177, 270, 405, 460, 557
CviQI	GTAC	2 cut(s)	81, 396
DdeI	CTNAG	2 cut(s)	39, 346
Eco130I	CCWWGG	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	1 cut(s)	307
FaiI	YATR	7 cut(s)	128, 144, 168, 204, 255, 305, 313
FaqI	GGGAC	2 cut(s)	18, 290
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	545
Fnu4HI	GCNGC	5 cut(s)	26, 110, 458, 468, 492
Fsp4HI	GCNGC	5 cut(s)	26, 110, 458, 468, 492
GluI	GCNGC	5 cut(s)	26, 110, 458, 468, 492
HapII	CCGG	2 cut(s)	274, 381
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	4 cut(s)	338, 384, 426, 472
HpaII	CCGG	2 cut(s)	274, 381
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	5 cut(s)	214, 337, 520, 530, 544
Hpy188III	TCNNGA	1 cut(s)	53
Hpy99I	CGWCG	2 cut(s)	548, 551
HpyAV	CCTTC	3 cut(s)	146, 189, 247
HpyCH4III	ACNGT	2 cut(s)	323, 395
HpyCH4IV	ACGT	2 cut(s)	164, 546
HpyCH4V	TGCA	7 cut(s)	14, 112, 257, 303, 417, 491, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	2 cut(s)	39, 346
HpySE526I	ACGT	2 cut(s)	164, 546
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	43, 282, 287, 333, 394, 427, 537
Lsp1109I	GCAGC	4 cut(s)	12, 96, 469, 503
MaeII	ACGT	2 cut(s)	164, 546
MaeIII	GTNAC	1 cut(s)	314
MboII	GAAGA	2 cut(s)	223, 557
MluCI	AATT	2 cut(s)	114, 227
MlyI	GAGTC	2 cut(s)	332, 378
MmeI	TCCRAC	2 cut(s)	508, 567
MnlI	CCTC	9 cut(s)	42, 94, 207, 279, 442, 471, 476, 492, 504
MspI	CCGG	2 cut(s)	274, 381
MspR9I	CCNGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	357
NciI	CCSGG	1 cut(s)	275
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	290, 522
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	426, 472
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	5 cut(s)	27, 111, 459, 469, 493
PleI	GAGTC	2 cut(s)	332, 378
PpsI	GAGTC	2 cut(s)	332, 378
PsiI	TTATAA	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	290, 522
PspPI	GGNCC	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	2 cut(s)	82, 397
RsaNI	GTAC	2 cut(s)	81, 396
SatI	GCNGC	5 cut(s)	26, 110, 458, 468, 492
Sau96I	GGNCC	1 cut(s)	520
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	2 cut(s)	332, 378
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	9 cut(s)	34, 40, 111, 133, 167, 290, 416, 503, 549
SinI	GGWCC	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	2 cut(s)	114, 227
SsiI	CCGC	6 cut(s)	63, 98, 187, 442, 467, 552
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	323, 395
TaiI	ACGT	2 cut(s)	167, 549
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	114, 227
TatI	WGTACW	1 cut(s)	80
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	2 cut(s)	426, 472
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	4 cut(s)	25, 109, 457, 491
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	307
ZraI	GACGTC	1 cut(s)	547
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.