Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003819.1

Orthogroup ID

OG0013776

Physical Location & Seq

Genomic Coordinates Forward (+)

57451 .. 58826

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgccggtgcaactgacgccgaacgcggtatccgccatcatcggcggtgatctcaacttgaagccgctgatgcaggtcgccgatatcaagctcatcggctcgcaggagaggtaccggctcatgctctccgacggcgtttggtctcagcacgccatggtcgccactcagctcaatgggctagtcaagaccggtcagatcaggaaaggctccgtcgtccagcttaccgagtacatttgcagcgaagtccagaaccgcaagattattgttgtgctgaatatggaaactattgtactggactcggagattattgggaatccaaaacaatatgttgagtctggtccaactactgaaactgcattacctaagaacaattttcagcagtctgcctatggcaacaatcatatgattggccaagggcctgttcccaaatggcagaatcccaggccctcttttcatcctgaaaactttgtttccagtatgccaaatgccagacctacattccaatctgaaagctctttttacaatactcccaatcccagacctacatttcatcctcaaagctcagctcccagtgtgccaaatttccgagctactgtgcagccttcctaccagccacctccacagtataaaaatcgtggtcccgtgttcaagaatgaggcgccagcacgtattatacctattaatgctctaaatccttatactgtggaggtggctggtaggaaggctgcacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

244

Amino Acids

26.96

Weight (kDa)

9.57

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep-A_N	PF04057	5 - 97	2.6e-29	Replication factor-A protein 1, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013776)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029349
rosa_multiflora	Rmu_sc0002196.1_g000001 Rmu_sc0003819.1_g000015 Rmu_sc0004006.1_g000001 Rmu_sc0030815.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315470
rosa_rugosa	Rorug01G0126800 Rorug06G0062600 Rorug06G0067700 Rorug06G0067800
rosa_samantha	Rh1AG148000 Rh1BG115800 Rh1BG115900 Rh1CG139400 Rh1DG154400 Rh6AG187300 Rh6BG190600
rosa_wichuraiana	Rw1G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	111, 658
AccII	CGCG	1 cut(s)	26
AciI	CCGC	5 cut(s)	26, 33, 45, 65, 253
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	580
AcyI	GRCGYC	2 cut(s)	17, 659
AfaI	GTAC	3 cut(s)	113, 230, 291
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	61, 649
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AluBI	AGCT	7 cut(s)	91, 169, 220, 513, 561, 566, 590
AluI	AGCT	7 cut(s)	91, 169, 220, 513, 561, 566, 590
Alw26I	GTCTC	1 cut(s)	147
AoxI	GGCC	3 cut(s)	409, 416, 443
ApeKI	GCWGC	3 cut(s)	237, 598, 725
ApoI	RAATTY	1 cut(s)	580
AseI	ATTAAT	1 cut(s)	681
AsiGI	ACCGGT	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	4 cut(s)	338, 416, 444, 638
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	338, 638
BalI	TGGCCA	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	111, 658
BbvI	GCAGC	3 cut(s)	249, 610, 712
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	4 cut(s)	65, 238, 599, 726
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	4 cut(s)	66, 239, 600, 727
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	2 cut(s)	338, 638
BmgT120I	GGNCC	4 cut(s)	338, 416, 444, 638
BmiI	GGNNCC	4 cut(s)	113, 208, 640, 660
BmrFI	CCNGG	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	564
BmsI	GCATC	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	562
BsaAI	YACGTR	1 cut(s)	668
BsaHI	GRCGYC	2 cut(s)	17, 659
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	153, 412, 440
BsaWI	WCCGGW	1 cut(s)	188
Bse118I	RCCGGY	3 cut(s)	4, 114, 188
Bse1I	ACTGG	3 cut(s)	297, 474, 570
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	3 cut(s)	153, 412, 440
BseGI	GGATG	2 cut(s)	454, 550
BseMII	CTCAG	3 cut(s)	158, 179, 576
BseNI	ACTGG	3 cut(s)	297, 474, 570
BseXI	GCAGC	3 cut(s)	249, 610, 712
BsgI	GTGCAG	2 cut(s)	617, 711
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	411, 418, 445
BshNI	GGYRCC	2 cut(s)	111, 658
BshTI	ACCGGT	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	5, 115, 189
BslFI	GGGAC	1 cut(s)	624
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	3 cut(s)	411, 418, 445
Bso31I	GGTCTC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	49, 195
Bsp1720I	GCTNAGC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	5 cut(s)	26, 33, 45, 65, 253
BspANI	GGCC	3 cut(s)	411, 418, 445
BspCNI	CTCAG	3 cut(s)	157, 178, 575
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	4 cut(s)	113, 208, 640, 660
BspMI	ACCTGC	1 cut(s)	64
BspT107I	GGYRCC	2 cut(s)	111, 658
BspTNI	GGTCTC	1 cut(s)	147
BsrFI	RCCGGY	3 cut(s)	4, 114, 188
BsrI	ACTGG	3 cut(s)	297, 474, 570
BssAI	RCCGGY	3 cut(s)	4, 114, 188
BssECI	CCNNGG	3 cut(s)	153, 412, 440
BssMI	GATC	2 cut(s)	49, 195
BssNI	GRCGYC	2 cut(s)	17, 659
BssT1I	CCWWGG	2 cut(s)	153, 412
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	4 cut(s)	595, 624, 703, 732
BstACI	GRCGYC	2 cut(s)	17, 659
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	101, 150, 663
BstDEI	CTNAG	4 cut(s)	144, 165, 363, 562
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	454, 550
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	2 cut(s)	52, 198
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	49, 195
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 32, 70, 158, 175
BstNI	CCWGG	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	440
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	249, 610, 712
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	411, 418, 445
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	454, 550
BtsIMutI	CAGTG	1 cut(s)	577
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	101, 150, 663
CfoI	GCGC	1 cut(s)	661
Cfr10I	RCCGGY	3 cut(s)	4, 114, 188
Cfr13I	GGNCC	4 cut(s)	338, 416, 444, 638
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	112, 229, 290
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	2 cut(s)	121, 154
CviQI	GTAC	3 cut(s)	112, 229, 290
DdeI	CTNAG	4 cut(s)	144, 165, 363, 562
DinI	GGCGCC	1 cut(s)	660
DpnI	GATC	2 cut(s)	51, 197
DpnII	GATC	2 cut(s)	49, 195
EaeI	YGGCCR	1 cut(s)	409
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	153, 412
Eco31I	GGTCTC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	338, 638
EcoO109I	RGGNCCY	2 cut(s)	416, 444
EcoRII	CCWGG	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	153, 412
EgeI	GGCGCC	1 cut(s)	660
EheI	GGCGCC	1 cut(s)	660
ErhI	CCWWGG	2 cut(s)	153, 412
FaeI	CATG	2 cut(s)	124, 157
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	2 cut(s)	120, 153
FauNDI	CATATG	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	65, 238, 599, 726
FokI	GGATG	2 cut(s)	441, 537
Fsp4HI	GCNGC	4 cut(s)	65, 238, 599, 726
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	4 cut(s)	65, 238, 599, 726
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	3 cut(s)	411, 418, 445
HapII	CCGG	3 cut(s)	5, 115, 189
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	661
Hin1I	GRCGYC	2 cut(s)	17, 659
Hin1II	CATG	2 cut(s)	124, 157
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HinfI	GANTC	4 cut(s)	296, 313, 332, 436
HpaII	CCGG	3 cut(s)	5, 115, 189
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	5 cut(s)	130, 195, 301, 508, 587
Hpy188III	TCNNGA	5 cut(s)	184, 199, 247, 458, 649
Hpy99I	CGWCG	2 cut(s)	134, 215
HpyAV	CCTTC	2 cut(s)	612, 715
HpyCH4III	ACNGT	4 cut(s)	595, 624, 703, 732
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	6 cut(s)	10, 73, 237, 356, 598, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 32, 70, 158, 175
HpyF3I	CTNAG	4 cut(s)	144, 165, 363, 562
HpySE526I	ACGT	1 cut(s)	667
Hsp92I	GRCGYC	2 cut(s)	17, 659
Hsp92II	CATG	2 cut(s)	124, 157
HspAI	GCGC	1 cut(s)	659
KasI	GGCGCC	1 cut(s)	658
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	49, 195
LmnI	GCTCC	2 cut(s)	212, 571
Lsp1109I	GCAGC	3 cut(s)	249, 610, 712
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	667
MalI	GATC	2 cut(s)	51, 197
MboI	GATC	2 cut(s)	49, 195
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	2 cut(s)	370, 580
MluNI	TGGCCA	1 cut(s)	411
Mly113I	GGCGCC	1 cut(s)	659
MlyI	GAGTC	2 cut(s)	290, 341
MmeI	TCCRAC	2 cut(s)	153, 365
MnlI	CCTC	6 cut(s)	102, 457, 564, 627, 649, 700
Mox20I	TGGCCA	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	3 cut(s)	5, 115, 189
MspR9I	CCNGG	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	442
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	5 cut(s)	16, 32, 70, 158, 175
NarI	GGCGCC	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	2 cut(s)	49, 195
NlaIII	CATG	2 cut(s)	124, 157
NlaIV	GGNNCC	4 cut(s)	113, 208, 640, 660
PfeI	GAWTC	2 cut(s)	313, 436
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	66, 239, 600, 727
PleI	GAGTC	2 cut(s)	290, 340
PluTI	GGCGCC	1 cut(s)	662
PpsI	GAGTC	2 cut(s)	290, 340
Ppu21I	YACGTR	1 cut(s)	668
PshBI	ATTAAT	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	4 cut(s)	113, 208, 640, 660
PspPI	GGNCC	4 cut(s)	338, 416, 444, 638
RsaI	GTAC	3 cut(s)	113, 230, 291
RsaNI	GTAC	3 cut(s)	112, 229, 290
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	4 cut(s)	65, 238, 599, 726
Sau3AI	GATC	2 cut(s)	49, 195
Sau96I	GGNCC	4 cut(s)	338, 416, 444, 638
SchI	GAGTC	2 cut(s)	290, 341
ScrFI	CCNGG	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	60
SfoI	GGCGCC	1 cut(s)	660
SinI	GGWCC	2 cut(s)	338, 638
Sse9I	AATT	2 cut(s)	370, 580
SsiI	CCGC	5 cut(s)	26, 33, 45, 65, 253
SspDI	GGCGCC	1 cut(s)	658
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	440
StyI	CCWWGG	2 cut(s)	153, 412
TaaI	ACNGT	4 cut(s)	595, 624, 703, 732
TaiI	ACGT	1 cut(s)	670
TasI	AATT	2 cut(s)	370, 580
TatI	WGTACW	2 cut(s)	228, 289
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	313, 436
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	3 cut(s)	237, 598, 725
TspDTI	ATGAA	2 cut(s)	443, 539
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	338, 638
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	1 cut(s)	580
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.