Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004006.1

Orthogroup ID

OG0013776

Physical Location & Seq

Genomic Coordinates Reverse (-)

611 .. 993

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgacaatggaactgacgccgaacgcggtggtcgccatcatcagcgtcaccgatatcaatcccatcaggcccaccagcttgccagtgtgttaccggttgatgatttccgacggcgtttggtctcatcacatcatggtcgcctttcagctcaatgacctatttgggactgaccaggtcaagaaaggctccgtcgtccggttcaccgactacatttgcaccgatgtccaggactgcaagttcgtctctctctcattttcgattttcgattttcggttaattaagatctatttcgattatgagatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

101

Amino Acids

11.62

Weight (kDa)

5.06

Isoelectric Point (pI)

18.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep-A_N	PF04057	10 - 77	7.2e-12	Replication factor-A protein 1, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013776)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029349
rosa_multiflora	Rmu_sc0002196.1_g000001 Rmu_sc0003819.1_g000015 Rmu_sc0004006.1_g000001 Rmu_sc0030815.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315470
rosa_rugosa	Rorug01G0126800 Rorug06G0062600 Rorug06G0067700 Rorug06G0067800
rosa_samantha	Rh1AG148000 Rh1BG115800 Rh1BG115900 Rh1CG139400 Rh1DG154400 Rh6AG187300 Rh6BG190600
rosa_wichuraiana	Rw1G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgeI	ACCGGT	1 cut(s)	93
AjnI	CCWGG	2 cut(s)	171, 225
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	78, 148
AluI	AGCT	2 cut(s)	78, 148
Alw26I	GTCTC	2 cut(s)	126, 247
AoxI	GGCC	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AsiGI	ACCGGT	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	40, 193
BccI	CCATC	2 cut(s)	44, 71
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	2 cut(s)	173, 227
BcoDI	GTCTC	2 cut(s)	126, 247
BglII	AGATCT	1 cut(s)	282
Bme1390I	CCNGG	2 cut(s)	173, 227
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	173, 227
BsaBI	GATNNNNATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	126
BsaWI	WCCGGW	2 cut(s)	93, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	173, 227
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	70
BshTI	ACCGGT	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	94, 196
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	2 cut(s)	126, 247
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	93
BssMI	GATC	1 cut(s)	282
BssNI	GRCGYC	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	173, 227
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	2 cut(s)	126, 247
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	173, 227
BstSCI	CCNGG	2 cut(s)	171, 225
BstUI	CGCG	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	2 cut(s)	25, 34
CsiI	ACCWGGT	1 cut(s)	171
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	4 cut(s)	70, 78, 148, 186
CviKI_1	RGCY	4 cut(s)	70, 78, 148, 186
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	171, 225
EcoRV	GATATC	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	1 cut(s)	136
FaiI	YATR	2 cut(s)	134, 297
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	2 cut(s)	94, 196
HgaI	GACGC	2 cut(s)	25, 34
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	136
HpaII	CCGG	2 cut(s)	94, 196
HphI	GGTGA	2 cut(s)	40, 193
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	201
Hpy99I	CGWCG	2 cut(s)	113, 194
HpyCH4V	TGCA	2 cut(s)	216, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	9 cut(s)	52, 88, 96, 107, 158, 185, 209, 212, 239
MabI	ACCWGGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	46, 89
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MflI	RGATCY	1 cut(s)	282
MluCI	AATT	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	132
MseI	TTAA	2 cut(s)	275, 279
MspI	CCGG	2 cut(s)	94, 196
MspR9I	CCNGG	2 cut(s)	173, 227
MvaI	CCWGG	2 cut(s)	173, 227
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	46
PacI	TTAATTAA	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	225
PinAI	ACCGGT	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	171, 225
PspGI	CCWGG	2 cut(s)	171, 225
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	282
PsyI	GACNNNGTC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	275, 279
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	173, 227
SetI	ASST	4 cut(s)	80, 150, 159, 177
SexAI	ACCWGGT	1 cut(s)	171
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	171, 225
TaqI	TCGA	3 cut(s)	257, 264, 291
TasI	AATT	1 cut(s)	276
Tru1I	TTAA	2 cut(s)	275, 279
Tru9I	TTAA	2 cut(s)	275, 279
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.