Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004093.1

Orthogroup ID

OG0018669

Physical Location & Seq

Genomic Coordinates Forward (+)

14525 .. 15754

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004093.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggaggttaatgagatagcgcaggtcctgctgcagatccaagatgaggaagtctttccgcgacagaagttccaggctcatgccccgccgccagaggcgccggctcatgagctggaacagtttaaaagaagacttgctggtttggatttcccaagcaaagtttttgaggtggtggactatcctccattggattactgcattcgttggaacactgaaggcacaggcctgcagattgtgtcggacgctgatttccgcaaggttgctttaaaccttctgtgtcagggaagtttttccagccttaccaggcagcttcaggcttatgggttcaagaaaaatacaaaatccaggtgcaagcacgagtacagtcatgaaaaagggtacttcctcagagcccaaaaacaaaagttgaagaaaatctgccgcaagccaccacaggccaccgggaagactccgggagagggaagggaggacccattgctcaatgtggaagggcgactgacctctctggaggcaaagatgacttgtcttcaggcaatgtccaatgttgaggcatggggaatggaccagtggctccgtgtggaagggcgacaaacgtcgctagaggcaaaattgacttctctcgatgcaaagtccgaccggatgatctctgaaatggttgcaatctggcaacttgttgaatcacgagctcaccgcctcaccccacatggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

236

Amino Acids

26.96

Weight (kDa)

8.75

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018669)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027161
rosa_multiflora	Rmu_sc0004093.1_g000001 Rmu_sc0004250.1_g000026
rosa_rugosa	Rorug01G0347100 Rorug01G0347200 Rorug01G0347300 Rorug01G0347400 Rorug01G0347500 Rorug01G0347600
rosa_samantha	Rh1AG354400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	97
AccII	CGCG	1 cut(s)	61
AciI	CCGC	6 cut(s)	59, 86, 89, 253, 421, 691
AclWI	GGATC	1 cut(s)	31
AcuI	CTGAAG	3 cut(s)	234, 296, 512
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	362, 380
AfiI	CCNNNNNNNGG	2 cut(s)	46, 458
AgsI	TTSAA	3 cut(s)	328, 409, 677
AjnI	CCWGG	3 cut(s)	72, 302, 344
AluBI	AGCT	3 cut(s)	112, 310, 686
AluI	AGCT	3 cut(s)	112, 310, 686
Alw21I	GWGCWC	1 cut(s)	688
AlwI	GGATC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	223, 435
ApeKI	GCWGC	2 cut(s)	31, 307
Asp700I	GAANNNNTTC	2 cut(s)	54, 289
AspLEI	GCGC	2 cut(s)	22, 100
AspS9I	GGNCC	3 cut(s)	25, 469, 562
AsuC2I	CCSGG	2 cut(s)	442, 453
AsuHPI	GGTGA	2 cut(s)	680, 688
AvaII	GGWCC	3 cut(s)	25, 469, 562
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	394, 688
BauI	CACGAG	2 cut(s)	356, 681
BbsI	GAAGAC	3 cut(s)	136, 452, 518
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	18, 319
BciT130I	CCWGG	3 cut(s)	74, 304, 346
BcnI	CCSGG	2 cut(s)	442, 453
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	2 cut(s)	32, 227
BfoI	RGCGCY	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	13
BisI	GCNGC	4 cut(s)	32, 89, 308, 421
BlsI	GCNGC	4 cut(s)	33, 90, 309, 422
Bme1390I	CCNGG	5 cut(s)	74, 304, 346, 442, 453
Bme18I	GGWCC	3 cut(s)	25, 469, 562
BmgT120I	GGNCC	3 cut(s)	25, 469, 562
BmiI	GGNNCC	3 cut(s)	99, 471, 572
BmrFI	CCNGG	5 cut(s)	74, 304, 346, 442, 453
BmsI	GCATC	1 cut(s)	613
BoxI	GACNNNNGTC	1 cut(s)	592
BpiI	GAAGAC	3 cut(s)	136, 452, 518
BpmI	CTGGAG	1 cut(s)	527
BpuMI	CCSGG	2 cut(s)	442, 453
BsaHI	GRCGYC	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 458
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	565
Bse3DI	GCAATG	2 cut(s)	473, 540
BseBI	CCWGG	3 cut(s)	74, 304, 346
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	2 cut(s)	46, 458
BseMI	GCAATG	2 cut(s)	473, 540
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	18, 319
Bsh1236I	CGCG	1 cut(s)	61
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	2 cut(s)	225, 437
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	688
BsiSI	CCGG	4 cut(s)	101, 441, 452, 637
BslI	CCNNNNNNNGG	2 cut(s)	46, 458
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	225, 437
Bsp1286I	GDGCHC	2 cut(s)	394, 688
Bsp143I	GATC	2 cut(s)	36, 642
BspACI	CCGC	6 cut(s)	59, 86, 89, 253, 421, 691
BspANI	GGCC	2 cut(s)	225, 437
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	2 cut(s)	106, 367
BspLI	GGNNCC	3 cut(s)	99, 471, 572
BspMAI	CTGCAG	2 cut(s)	36, 231
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	473, 540
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	100
BssMI	GATC	2 cut(s)	36, 642
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	2 cut(s)	356, 681
Bst2BI	CACGAG	2 cut(s)	356, 681
Bst2UI	CCWGG	3 cut(s)	74, 304, 346
Bst4CI	ACNGT	2 cut(s)	120, 365
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	102, 227, 353, 425
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	645
BstFNI	CGCG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	22, 100
BstKTI	GATC	2 cut(s)	39, 645
BstMBI	GATC	2 cut(s)	36, 642
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 97
BstNI	CCWGG	3 cut(s)	74, 304, 346
BstPAI	GACNNNNGTC	1 cut(s)	592
BstSCI	CCNGG	5 cut(s)	72, 302, 344, 440, 451
BstSFI	CTRYAG	2 cut(s)	32, 227
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	18, 319
BstV2I	GAAGAC	3 cut(s)	136, 452, 518
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	225, 437
BtsCI	GGATG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	210, 572
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	4 cut(s)	102, 227, 353, 425
CaiI	CAGNNNCTG	1 cut(s)	28
CciI	TCATGA	2 cut(s)	106, 367
CfoI	GCGC	2 cut(s)	22, 100
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	25, 469, 562
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	361, 379
CviAII	CATG	5 cut(s)	80, 107, 368, 552, 704
CviQI	GTAC	2 cut(s)	361, 379
DdeI	CTNAG	1 cut(s)	386
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	2 cut(s)	38, 644
DpnII	GATC	2 cut(s)	36, 642
DraI	TTTAAA	2 cut(s)	124, 267
Ecl136II	GAGCTC	1 cut(s)	686
Eco147I	AGGCCT	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	394, 688
Eco47I	GGWCC	3 cut(s)	25, 469, 562
Eco53kI	GAGCTC	1 cut(s)	686
Eco57I	CTGAAG	3 cut(s)	234, 296, 512
EcoICRI	GAGCTC	1 cut(s)	686
EcoO109I	RGGNCCY	2 cut(s)	25, 469
EcoRII	CCWGG	3 cut(s)	72, 302, 344
EcoT38I	GRGCYC	2 cut(s)	394, 688
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
FaeI	CATG	5 cut(s)	83, 110, 371, 555, 707
FaiI	YATR	6 cut(s)	81, 108, 321, 369, 553, 705
FatI	CATG	5 cut(s)	79, 106, 367, 551, 703
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	32, 89, 308, 421
FokI	GGATG	1 cut(s)	652
FriOI	GRGCYC	2 cut(s)	394, 688
Fsp4HI	GCNGC	4 cut(s)	32, 89, 308, 421
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	2 cut(s)	21, 99
GluI	GCNGC	4 cut(s)	32, 89, 308, 421
GsuI	CTGGAG	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	225, 437
HapII	CCGG	4 cut(s)	101, 441, 452, 637
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	22, 100
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	5 cut(s)	83, 110, 371, 555, 707
Hin6I	GCGC	2 cut(s)	20, 98
HinP1I	GCGC	2 cut(s)	20, 98
HinfI	GANTC	2 cut(s)	448, 677
HpaII	CCGG	4 cut(s)	101, 441, 452, 637
HphI	GGTGA	2 cut(s)	680, 688
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	4 cut(s)	241, 389, 634, 649
Hpy188III	TCNNGA	6 cut(s)	107, 328, 368, 506, 620, 681
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	598
HpyAV	CCTTC	5 cut(s)	209, 281, 456, 482, 575
HpyCH4III	ACNGT	2 cut(s)	120, 365
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	6 cut(s)	34, 198, 229, 351, 626, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 97
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	593
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	5 cut(s)	83, 110, 371, 555, 707
HspAI	GCGC	2 cut(s)	20, 98
KasI	GGCGCC	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	36, 642
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	2 cut(s)	18, 319
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	1 cut(s)	593
MalI	GATC	2 cut(s)	38, 644
MboI	GATC	2 cut(s)	36, 642
MboII	GAAGA	4 cut(s)	141, 421, 457, 518
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	394, 688
MluCI	AATT	1 cut(s)	608
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	3 cut(s)	185, 219, 657
MroNI	GCCGGC	1 cut(s)	100
MroXI	GAANNNNTTC	2 cut(s)	54, 289
MseI	TTAA	3 cut(s)	9, 123, 266
MspI	CCGG	4 cut(s)	101, 441, 452, 637
MspR9I	CCNGG	5 cut(s)	74, 304, 346, 442, 453
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	3 cut(s)	74, 304, 346
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	28, 97
NaeI	GCCGGC	1 cut(s)	102
NarI	GGCGCC	1 cut(s)	98
NciI	CCSGG	2 cut(s)	442, 453
NdeII	GATC	2 cut(s)	36, 642
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	5 cut(s)	83, 110, 371, 555, 707
NlaIV	GGNNCC	3 cut(s)	99, 471, 572
PagI	TCATGA	2 cut(s)	106, 367
PceI	AGGCCT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	54, 289
PfeI	GAWTC	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	4 cut(s)	33, 90, 309, 422
PleI	GAGTC	1 cut(s)	442
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	442
PpuMI	RGGWCCY	2 cut(s)	25, 469
PshAI	GACNNNNGTC	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	688
Psp5II	RGGWCCY	2 cut(s)	25, 469
Psp6I	CCWGG	3 cut(s)	72, 302, 344
PspGI	CCWGG	3 cut(s)	72, 302, 344
PspN4I	GGNNCC	3 cut(s)	99, 471, 572
PspPI	GGNCC	3 cut(s)	25, 469, 562
PspPPI	RGGWCCY	2 cut(s)	25, 469
PstI	CTGCAG	2 cut(s)	36, 231
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	2 cut(s)	362, 380
RsaNI	GTAC	2 cut(s)	361, 379
SacI	GAGCTC	1 cut(s)	688
SaqAI	TTAA	3 cut(s)	9, 123, 266
SatI	GCNGC	4 cut(s)	32, 89, 308, 421
Sau3AI	GATC	2 cut(s)	36, 642
Sau96I	GGNCC	3 cut(s)	25, 469, 562
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	5 cut(s)	74, 304, 346, 442, 453
SduI	GDGCHC	2 cut(s)	394, 688
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	2 cut(s)	32, 227
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	3 cut(s)	25, 469, 562
Sse9I	AATT	1 cut(s)	608
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	6 cut(s)	59, 86, 89, 253, 421, 691
SspDI	GGCGCC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	599
SstI	GAGCTC	1 cut(s)	688
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	5 cut(s)	72, 302, 344, 440, 451
TaaI	ACNGT	2 cut(s)	120, 365
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	1 cut(s)	621
TasI	AATT	1 cut(s)	608
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	2 cut(s)	91, 423
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	3 cut(s)	9, 123, 266
Tru9I	TTAA	3 cut(s)	9, 123, 266
TscAI	CASTG	2 cut(s)	217, 572
TseI	GCWGC	2 cut(s)	31, 307
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	2 cut(s)	217, 572
VpaK11BI	GGWCC	3 cut(s)	25, 469, 562
XmnI	GAANNNNTTC	2 cut(s)	54, 289
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.