Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0018669

Physical Location & Seq

Genomic Coordinates Reverse (-)

46525313 .. 46527242

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0347100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGCGGCGCCGGGAAGAAAGTGGTGGATGTGGCTTTCAAAGCCTCGAAGAAGATTGACTGGGATGGCATGGCCAAGCTTATCGTCTCCGAGGAGGCCCGCAAGGAGTTCGCCTCTCTCCGCCGCGCCTTCGATGAGGTTAACACCACCCTCGAGACCAAGTTCAGCCAGGAACCTGAGCCCATTGACTGGGAGTACTACAGGAAAGGAATTGGGTCTCGATTGGTGGACATGTACAAAGAGGCCTATGACAACGTTAAGATCCCCAAGTATGTGGATACAGTCACTCCCGAGTACAAGCCTAAGTTTGATGCATTGTTGGTGGAACTAAAGGAAGCAGAGGAAAAATCTTTTAAGGAGTCAGAGCGCTTAGAGAAGGAGATAGCTGAAGTAAAAGAGTTGAAGCAAAAGATTGCTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTCAAGAAGAAGTTTGATGATGAGATCCGGAATGACAATTGGGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

168

Amino Acids

19.71

Weight (kDa)

5.24

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mt_ATP-synt_D	PF05873	15 - 157	1e-18	ATP synthase D chain, mitochondrial (ATP5H)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018669)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027161
rosa_multiflora	Rmu_sc0004093.1_g000001 Rmu_sc0004250.1_g000026
rosa_rugosa	Rorug01G0347100 Rorug01G0347200 Rorug01G0347300 Rorug01G0347400 Rorug01G0347500 Rorug01G0347600
rosa_samantha	Rh1AG354400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	483
AciI	CCGC	4 cut(s)	6, 100, 121, 124
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	2 cut(s)	256, 475
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	3 cut(s)	197, 236, 296
AfeI	AGCGCT	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	40, 403
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	3 cut(s)	79, 386, 457
AluI	AGCT	3 cut(s)	79, 386, 457
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	3 cut(s)	91, 149, 222
AlwI	GGATC	2 cut(s)	256, 475
Ama87I	CYCGRG	2 cut(s)	152, 290
Aor13HI	TCCGGA	1 cut(s)	483
Aor51HI	AGCGCT	1 cut(s)	368
AoxI	GGCC	3 cut(s)	72, 96, 243
AspLEI	GCGC	3 cut(s)	11, 128, 369
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	13
AvaI	CYCGRG	2 cut(s)	152, 290
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	183, 459
Bbv12I	GWGCWC	1 cut(s)	459
BccI	CCATC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	3 cut(s)	91, 149, 222
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	2 cut(s)	12, 370
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	2 cut(s)	7, 124
BlsI	GCNGC	2 cut(s)	8, 125
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	13, 170
BmeT110I	CYCGRG	2 cut(s)	152, 290
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	10, 174
BmrFI	CCNGG	2 cut(s)	13, 170
BmrI	ACTGGG	2 cut(s)	70, 199
BmsI	GCATC	2 cut(s)	301, 457
BmuI	ACTGGG	2 cut(s)	70, 199
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	2 cut(s)	177, 453
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	2 cut(s)	149, 222
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	65, 194
BseAI	TCCGGA	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	3 cut(s)	34, 70, 448
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	168, 444
BseNI	ACTGG	2 cut(s)	65, 194
BseRI	GAGGAG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	74, 98, 245
BshNI	GGYRCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	2 cut(s)	152, 290
BsiSI	CCGG	2 cut(s)	12, 484
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	3 cut(s)	91, 149, 222
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	74, 98, 245
Bso31I	GGTCTC	2 cut(s)	149, 222
BsoBI	CYCGRG	2 cut(s)	152, 290
Bsp1286I	GDGCHC	2 cut(s)	183, 459
Bsp13I	TCCGGA	1 cut(s)	483
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	261, 480
BspACI	CCGC	4 cut(s)	6, 100, 121, 124
BspANI	GGCC	3 cut(s)	74, 98, 245
BspCNI	CTCAG	2 cut(s)	169, 445
BspEI	TCCGGA	1 cut(s)	483
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	10, 174
BspPI	GGATC	2 cut(s)	256, 475
BspT107I	GGYRCC	1 cut(s)	8
BspTNI	GGTCTC	2 cut(s)	149, 222
BsrBI	CCGCTC	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	65, 194
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	261, 480
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	4 cut(s)	177, 303, 370, 453
BstF5I	GGATG	3 cut(s)	34, 70, 448
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	2 cut(s)	12, 370
BstHHI	GCGC	3 cut(s)	11, 128, 369
BstKTI	GATC	2 cut(s)	264, 483
BstMAI	GTCTC	3 cut(s)	91, 149, 222
BstMBI	GATC	2 cut(s)	261, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 454
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	11, 168
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	1 cut(s)	126
BstX2I	RGATCY	2 cut(s)	261, 480
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	2 cut(s)	261, 480
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	74, 98, 245
BtsCI	GGATG	3 cut(s)	34, 70, 448
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	3 cut(s)	11, 128, 369
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	196, 235, 295
CviAII	CATG	3 cut(s)	70, 232, 421
CviQI	GTAC	3 cut(s)	196, 235, 295
DdeI	CTNAG	4 cut(s)	177, 303, 370, 453
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	2 cut(s)	263, 482
DpnII	GATC	2 cut(s)	261, 480
EaeI	YGGCCR	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	457
Eco147I	AGGCCT	1 cut(s)	245
Eco24I	GRGCYC	2 cut(s)	183, 459
Eco31I	GGTCTC	2 cut(s)	149, 222
Eco47III	AGCGCT	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	2 cut(s)	152, 290
EcoICRI	GAGCTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	183, 459
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	3 cut(s)	73, 235, 424
FaiI	YATR	5 cut(s)	71, 233, 249, 273, 422
FatI	CATG	3 cut(s)	69, 231, 420
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	7, 124
FokI	GGATG	3 cut(s)	41, 77, 435
FriOI	GRGCYC	2 cut(s)	183, 459
Fsp4HI	GCNGC	2 cut(s)	7, 124
GlaI	GCGC	3 cut(s)	10, 127, 368
GluI	GCNGC	2 cut(s)	7, 124
HaeII	RGCGCY	2 cut(s)	12, 370
HaeIII	GGCC	3 cut(s)	74, 98, 245
HapII	CCGG	2 cut(s)	12, 484
HhaI	GCGC	3 cut(s)	11, 128, 369
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	73, 235, 424
Hin6I	GCGC	3 cut(s)	9, 126, 367
HinP1I	GCGC	3 cut(s)	9, 126, 367
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	359
HpaI	GTTAAC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	12, 484
Hpy166II	GTNNAC	2 cut(s)	142, 229
Hpy188I	TCNGA	2 cut(s)	91, 364
Hpy188III	TCNNGA	6 cut(s)	154, 219, 290, 452, 460, 484
Hpy8I	GTNNAC	2 cut(s)	142, 229
HpyAV	CCTTC	2 cut(s)	139, 370
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 454
HpyF3I	CTNAG	4 cut(s)	177, 303, 370, 453
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	73, 235, 424
HspAI	GCGC	3 cut(s)	9, 126, 367
KasI	GGCGCC	1 cut(s)	8
Kpn2I	TCCGGA	1 cut(s)	483
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	261, 480
LpnPI	CCDG	9 cut(s)	25, 46, 155, 175, 182, 187, 189, 465, 497
LweI	GCATC	2 cut(s)	301, 457
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	263, 482
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	261, 480
MboII	GAAGA	4 cut(s)	28, 61, 64, 475
MfeI	CAATTG	1 cut(s)	493
MflI	RGATCY	2 cut(s)	261, 480
MhlI	GDGCHC	2 cut(s)	183, 459
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	210, 493
MluNI	TGGCCA	1 cut(s)	74
Mly113I	GGCGCC	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	8 cut(s)	55, 85, 88, 124, 130, 161, 235, 334
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	3 cut(s)	141, 258, 354
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	2 cut(s)	12, 484
MspR9I	CCNGG	2 cut(s)	13, 170
MunI	CAATTG	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	41, 454
NarI	GGCGCC	1 cut(s)	9
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	261, 480
NlaIII	CATG	3 cut(s)	73, 235, 424
NlaIV	GGNNCC	2 cut(s)	10, 174
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	245
PciI	ACATGT	1 cut(s)	231
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	8, 125
PleI	GAGTC	1 cut(s)	367
PluTI	GGCGCC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	367
PscI	ACATGT	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	459
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	10, 174
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	261, 480
RsaI	GTAC	3 cut(s)	197, 236, 296
RsaNI	GTAC	3 cut(s)	196, 235, 295
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	141, 258, 354
SatI	GCNGC	2 cut(s)	7, 124
Sau3AI	GATC	2 cut(s)	261, 480
Sau96I	GGNCC	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	13, 170
SduI	GDGCHC	2 cut(s)	183, 459
SetI	ASST	6 cut(s)	81, 141, 178, 258, 388, 459
SfaNI	GCATC	2 cut(s)	301, 457
SfcI	CTRYAG	1 cut(s)	199
SfoI	GGCGCC	1 cut(s)	10
Sfr274I	CTCGAG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	152, 458
SmoI	CTYRAG	2 cut(s)	152, 458
Sse9I	AATT	2 cut(s)	210, 493
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	4 cut(s)	6, 100, 121, 124
SspDI	GGCGCC	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	11, 168
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	4 cut(s)	47, 132, 153, 220
TasI	AATT	2 cut(s)	210, 493
TatI	WGTACW	3 cut(s)	195, 234, 294
TauI	GCSGC	2 cut(s)	9, 126
Tru1I	TTAA	3 cut(s)	141, 258, 354
Tru9I	TTAA	3 cut(s)	141, 258, 354
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	447
Van91I	CCANNNNNTGG	1 cut(s)	189
XceI	RCATGY	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	197
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.