Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018669

Physical Location & Seq

Genomic Coordinates Reverse (-)

59013731 .. 59015453

Gene Structure 1723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG354400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGAACTCAGAATCTGAGATGGAGGTTAATGAGATAGCGCAGGTCCTGCTGCAGATCCAAGATGAGGAAGTCTTGCCGCGACAGAAGTTCCAGGCTCATGCCCCGCCGCCAGAGGCGCCGGCTCATGAGCTTGAACAGTTTAAAAGAAGACTTGCTGGTTTGGATTTCCCAAACAAAGTTTATGAGGTGGTGGACTATCCTCCATTGGATTACTGCATTCGTTGGAACACTGAAGGCACAGGCCTGCAGATTGTGTCGGACGCTGATTTCCGCAAGGTTGCTTTAAACCTTCTGTGTCAGGGAAGTTTTTCCAGCCTTACCAGGCAGCTTCAGGCTTATGGGTTCAAGAAAAATACAAAATCTAGGTGCAAGCACGAGTACAGTCATGAAAAAGGGTACTTCCTCAGAGCCCAAAAACAAAAGTTGAAGAAAATCTGCCGCAAGCCACCACAGGCCACCGGGAAGACTCCGGGAGAGGGAAGGGAGGACCCATTGCTCAATGTGGAAGGGCGACTGACCTCTCTGGAGGCAAAGATGACTTGTCTTCAGGCAATGTCCAATGTTGAGGCATGGGGAATGGACCAGTGGCTCCGTGTGGAAGGGCGACAAACGTCGCTAGAGGCAAAAATGACTTCTCTCGATGCAAAGTCCGACCGGATGATCTCTGAAATGGTTGCAATCTGGCAACTTGTTGAATCACGAGCTCACCGCCTCACCCCACATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

243

Amino Acids

27.76

Weight (kDa)

8.22

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	57 - 149	1.6e-14	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018669)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027161
rosa_multiflora	Rmu_sc0004093.1_g000001 Rmu_sc0004250.1_g000026
rosa_rugosa	Rorug01G0347100 Rorug01G0347200 Rorug01G0347300 Rorug01G0347400 Rorug01G0347500 Rorug01G0347600
rosa_samantha	Rh1AG354400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	118
AccII	CGCG	1 cut(s)	82
AciI	CCGC	6 cut(s)	80, 107, 110, 274, 442, 712
AclWI	GGATC	1 cut(s)	52
AcuI	CTGAAG	3 cut(s)	255, 317, 533
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	383, 401
AfiI	CCNNNNNNNGG	2 cut(s)	67, 479
AgsI	TTSAA	4 cut(s)	137, 349, 430, 698
AjnI	CCWGG	2 cut(s)	93, 323
AluBI	AGCT	3 cut(s)	133, 331, 707
AluI	AGCT	3 cut(s)	133, 331, 707
Alw21I	GWGCWC	1 cut(s)	709
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	2 cut(s)	17, 49
AoxI	GGCC	2 cut(s)	244, 456
ApeKI	GCWGC	2 cut(s)	52, 328
Asp700I	GAANNNNTTC	1 cut(s)	310
AspLEI	GCGC	2 cut(s)	43, 121
AspS9I	GGNCC	3 cut(s)	46, 490, 583
AsuC2I	CCSGG	2 cut(s)	463, 474
AsuHPI	GGTGA	3 cut(s)	16, 701, 709
AvaII	GGWCC	3 cut(s)	46, 490, 583
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	2 cut(s)	415, 709
BauI	CACGAG	2 cut(s)	377, 702
BbsI	GAAGAC	3 cut(s)	157, 473, 539
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	2 cut(s)	39, 340
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	95, 325
BcnI	CCSGG	2 cut(s)	463, 474
BfaI	CTAG	2 cut(s)	366, 620
BfmI	CTRYAG	2 cut(s)	53, 248
BfoI	RGCGCY	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	5 cut(s)	53, 80, 110, 329, 442
BlsI	GCNGC	5 cut(s)	54, 81, 111, 330, 443
Bme1390I	CCNGG	4 cut(s)	95, 325, 463, 474
Bme18I	GGWCC	3 cut(s)	46, 490, 583
BmgT120I	GGNCC	3 cut(s)	46, 490, 583
BmiI	GGNNCC	3 cut(s)	120, 492, 593
BmrFI	CCNGG	4 cut(s)	95, 325, 463, 474
BmsI	GCATC	1 cut(s)	634
BoxI	GACNNNNGTC	1 cut(s)	613
BpiI	GAAGAC	3 cut(s)	157, 473, 539
BpmI	CTGGAG	1 cut(s)	548
BpuMI	CCSGG	2 cut(s)	463, 474
BsaHI	GRCGYC	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 479
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	586
Bse3DI	GCAATG	2 cut(s)	494, 561
BseBI	CCWGG	2 cut(s)	95, 325
BseGI	GGATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	2 cut(s)	67, 479
BseMI	GCAATG	2 cut(s)	494, 561
BseMII	CTCAG	3 cut(s)	9, 24, 421
BseNI	ACTGG	1 cut(s)	586
BseXI	GCAGC	2 cut(s)	39, 340
Bsh1236I	CGCG	1 cut(s)	82
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	2 cut(s)	246, 458
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	4 cut(s)	122, 462, 473, 658
BslI	CCNNNNNNNGG	2 cut(s)	67, 479
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	246, 458
Bsp1286I	GDGCHC	2 cut(s)	415, 709
Bsp143I	GATC	2 cut(s)	57, 663
BspACI	CCGC	6 cut(s)	80, 107, 110, 274, 442, 712
BspANI	GGCC	2 cut(s)	246, 458
BspCNI	CTCAG	3 cut(s)	10, 23, 420
BspFNI	CGCG	1 cut(s)	82
BspHI	TCATGA	2 cut(s)	127, 388
BspLI	GGNNCC	3 cut(s)	120, 492, 593
BspMAI	CTGCAG	2 cut(s)	57, 252
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	494, 561
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	2 cut(s)	57, 663
BssNI	GRCGYC	1 cut(s)	119
BssSI	CACGAG	2 cut(s)	377, 702
Bst2BI	CACGAG	2 cut(s)	377, 702
Bst2UI	CCWGG	2 cut(s)	95, 325
Bst4CI	ACNGT	2 cut(s)	141, 386
BstACI	GRCGYC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	4 cut(s)	123, 248, 374, 446
BstDEI	CTNAG	3 cut(s)	10, 18, 407
BstF5I	GGATG	1 cut(s)	666
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	43, 121
BstKTI	GATC	2 cut(s)	60, 666
BstMBI	GATC	2 cut(s)	57, 663
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 118
BstNI	CCWGG	2 cut(s)	95, 325
BstPAI	GACNNNNGTC	1 cut(s)	613
BstSCI	CCNGG	4 cut(s)	93, 323, 461, 472
BstSFI	CTRYAG	2 cut(s)	53, 248
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	39, 340
BstV2I	GAAGAC	3 cut(s)	157, 473, 539
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	246, 458
BtsCI	GGATG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	231, 593
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	4 cut(s)	123, 248, 374, 446
CaiI	CAGNNNCTG	2 cut(s)	17, 49
CciI	TCATGA	2 cut(s)	127, 388
CfoI	GCGC	2 cut(s)	43, 121
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	46, 490, 583
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	382, 400
CviAII	CATG	5 cut(s)	101, 128, 389, 573, 725
CviQI	GTAC	2 cut(s)	382, 400
DdeI	CTNAG	3 cut(s)	10, 18, 407
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	2 cut(s)	59, 665
DpnII	GATC	2 cut(s)	57, 663
DraI	TTTAAA	2 cut(s)	145, 288
Ecl136II	GAGCTC	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	415, 709
Eco47I	GGWCC	3 cut(s)	46, 490, 583
Eco53kI	GAGCTC	1 cut(s)	707
Eco57I	CTGAAG	3 cut(s)	255, 317, 533
EcoICRI	GAGCTC	1 cut(s)	707
EcoO109I	RGGNCCY	2 cut(s)	46, 490
EcoRII	CCWGG	2 cut(s)	93, 323
EcoT38I	GRGCYC	2 cut(s)	415, 709
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
FaeI	CATG	5 cut(s)	104, 131, 392, 576, 728
FaiI	YATR	7 cut(s)	102, 129, 186, 342, 390, 574, 726
FatI	CATG	5 cut(s)	100, 127, 388, 572, 724
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	53, 80, 110, 329, 442
FokI	GGATG	1 cut(s)	673
FriOI	GRGCYC	2 cut(s)	415, 709
Fsp4HI	GCNGC	5 cut(s)	53, 80, 110, 329, 442
FspBI	CTAG	2 cut(s)	366, 620
GlaI	GCGC	2 cut(s)	42, 120
GluI	GCNGC	5 cut(s)	53, 80, 110, 329, 442
GsuI	CTGGAG	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	246, 458
HapII	CCGG	4 cut(s)	122, 462, 473, 658
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	2 cut(s)	43, 121
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	104, 131, 392, 576, 728
Hin6I	GCGC	2 cut(s)	41, 119
HinP1I	GCGC	2 cut(s)	41, 119
HinfI	GANTC	3 cut(s)	14, 469, 698
HpaII	CCGG	4 cut(s)	122, 462, 473, 658
HphI	GGTGA	3 cut(s)	16, 701, 709
Hpy166II	GTNNAC	2 cut(s)	7, 196
Hpy188I	TCNGA	6 cut(s)	13, 19, 262, 410, 655, 670
Hpy188III	TCNNGA	6 cut(s)	128, 349, 389, 527, 641, 702
Hpy8I	GTNNAC	2 cut(s)	7, 196
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	5 cut(s)	230, 302, 477, 503, 596
HpyCH4III	ACNGT	2 cut(s)	141, 386
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	6 cut(s)	55, 219, 250, 372, 647, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 118
HpyF3I	CTNAG	3 cut(s)	10, 18, 407
HpySE526I	ACGT	1 cut(s)	614
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	5 cut(s)	104, 131, 392, 576, 728
HspAI	GCGC	2 cut(s)	41, 119
KasI	GGCGCC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	57, 663
LmnI	GCTCC	1 cut(s)	597
Lsp1109I	GCAGC	2 cut(s)	39, 340
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	366, 620
MaeII	ACGT	1 cut(s)	614
MalI	GATC	2 cut(s)	59, 665
MboI	GATC	2 cut(s)	57, 663
MboII	GAAGA	4 cut(s)	162, 442, 478, 539
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	415, 709
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	3 cut(s)	206, 240, 678
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	310
MseI	TTAA	3 cut(s)	30, 144, 287
MspI	CCGG	4 cut(s)	122, 462, 473, 658
MspR9I	CCNGG	4 cut(s)	95, 325, 463, 474
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	2 cut(s)	95, 325
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	49, 118
NaeI	GCCGGC	1 cut(s)	123
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	2 cut(s)	463, 474
NdeII	GATC	2 cut(s)	57, 663
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	5 cut(s)	104, 131, 392, 576, 728
NlaIV	GGNNCC	3 cut(s)	120, 492, 593
PagI	TCATGA	2 cut(s)	127, 388
PceI	AGGCCT	1 cut(s)	246
PctI	GAATGC	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	14, 698
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	54, 81, 111, 330, 443
PleI	GAGTC	1 cut(s)	463
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	463
PpuMI	RGGWCCY	2 cut(s)	46, 490
PshAI	GACNNNNGTC	1 cut(s)	613
Psp124BI	GAGCTC	1 cut(s)	709
Psp5II	RGGWCCY	2 cut(s)	46, 490
Psp6I	CCWGG	2 cut(s)	93, 323
PspGI	CCWGG	2 cut(s)	93, 323
PspN4I	GGNNCC	3 cut(s)	120, 492, 593
PspPI	GGNCC	3 cut(s)	46, 490, 583
PspPPI	RGGWCCY	2 cut(s)	46, 490
PstI	CTGCAG	2 cut(s)	57, 252
PstNI	CAGNNNCTG	2 cut(s)	17, 49
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	383, 401
RsaNI	GTAC	2 cut(s)	382, 400
SacI	GAGCTC	1 cut(s)	709
SaqAI	TTAA	3 cut(s)	30, 144, 287
SatI	GCNGC	5 cut(s)	53, 80, 110, 329, 442
Sau3AI	GATC	2 cut(s)	57, 663
Sau96I	GGNCC	3 cut(s)	46, 490, 583
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	4 cut(s)	95, 325, 463, 474
SduI	GDGCHC	2 cut(s)	415, 709
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	2 cut(s)	53, 248
SfoI	GGCGCC	1 cut(s)	120
SinI	GGWCC	3 cut(s)	46, 490, 583
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	6 cut(s)	80, 107, 110, 274, 442, 712
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	366, 620
SstI	GAGCTC	1 cut(s)	709
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	4 cut(s)	93, 323, 461, 472
TaaI	ACNGT	2 cut(s)	141, 386
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	1 cut(s)	642
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	3 cut(s)	82, 112, 444
TfiI	GAWTC	2 cut(s)	14, 698
Tru1I	TTAA	3 cut(s)	30, 144, 287
Tru9I	TTAA	3 cut(s)	30, 144, 287
TscAI	CASTG	2 cut(s)	238, 593
TseI	GCWGC	2 cut(s)	52, 328
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	2 cut(s)	238, 593
VpaK11BI	GGWCC	3 cut(s)	46, 490, 583
XmnI	GAANNNNTTC	1 cut(s)	310
XspI	CTAG	2 cut(s)	366, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.