Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004178.1

Orthogroup ID

OG0020743

Physical Location & Seq

Genomic Coordinates Forward (+)

22771 .. 24780

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004178.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggttcgctcctacattgagaagcccaacagtataatttcagcaatttcacctgctaatcaagatcttgctacatctgatgcaattaaaatcccttgtgaagtggatccaataggctattattgcggttccgagaaactgatgctgggagtggaggttaaaaaagttttagataggagggatttgacagatattgaaatatatgggatgcaaggaatcccacctgatgtcttggctgcacattatggagaggaagaatacgacgccccgtcaaaaatggctaaatggaaatcccatcaactcagctttttggtggtgtggtgccaggttcactggggatatatcctccctaaccacgttttgaaatgcggccaatatacaattcatcggtcccaatgcctcataacggttggcaagttgcaccccgtccccagccttggtatccacagcctccggcagtctctggtcctccgccttccggattgggttattcacaacagccattgtttcctgtgcagccacctctaccatcaaccccctggacttcaatcttcacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

186

Amino Acids

21.0

Weight (kDa)

6.82

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020743)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004178.1_g000004
rosa_rugosa	Rorug01G0064100
rosa_samantha	Rh2CG593500 Rh6AG146500 Rh6DG259000
rosa_wichuraiana	Rw3G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	3 cut(s)	126, 369, 472
AclWI	GGATC	2 cut(s)	101, 114
AcoI	YGGCCR	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	264
AfiI	CCNNNNNNNGG	3 cut(s)	406, 437, 478
AgsI	TTSAA	3 cut(s)	197, 364, 548
AhdI	GACNNNNNGTC	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	324, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	101, 114
AlwNI	CAGNNNCTG	1 cut(s)	463
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	236, 516
AspS9I	GGNCC	2 cut(s)	390, 466
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	2 cut(s)	390, 466
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	223, 528
BccI	CCATC	2 cut(s)	303, 537
BciT130I	CCWGG	2 cut(s)	326, 540
BciVI	GTATCC	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	452
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	237, 370, 517
BlsI	GCNGC	3 cut(s)	238, 371, 518
Bme1390I	CCNGG	2 cut(s)	326, 540
Bme18I	GGWCC	2 cut(s)	390, 466
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	390, 466
BmiI	GGNNCC	4 cut(s)	108, 130, 323, 392
BmrFI	CCNGG	2 cut(s)	326, 540
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	3 cut(s)	70, 132, 198
BmuI	ACTGGG	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	436, 538
BsaWI	WCCGGW	1 cut(s)	478
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	3 cut(s)	406, 437, 478
Bse1I	ACTGG	1 cut(s)	338
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	326, 540
BseDI	CCNNGG	2 cut(s)	436, 538
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	406, 437, 478
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	223, 528
BseYI	CCCAGC	2 cut(s)	145, 431
BsgI	GTGCAG	2 cut(s)	222, 535
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	454, 479
BslFI	GGGAC	2 cut(s)	376, 413
BslI	CCNNNNNNNGG	3 cut(s)	406, 437, 478
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	2 cut(s)	376, 413
BsnI	GGCC	1 cut(s)	372
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	2 cut(s)	64, 106
BspACI	CCGC	3 cut(s)	126, 369, 472
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	315
BspEI	TCCGGA	1 cut(s)	478
BspLI	GGNNCC	4 cut(s)	108, 130, 323, 392
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	101, 114
BspT107I	GGYRCC	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	436, 538
BssMI	GATC	2 cut(s)	64, 106
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	326, 540
Bst4CI	ACNGT	3 cut(s)	32, 409, 558
BstACI	GRCGYC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	67, 109
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	2 cut(s)	64, 106
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	2 cut(s)	326, 540
BstSCI	CCNGG	2 cut(s)	324, 538
BstV1I	GCAGC	2 cut(s)	223, 528
BstX2I	RGATCY	2 cut(s)	64, 106
BstYI	RGATCY	2 cut(s)	64, 106
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	390, 466
CseI	GACGC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	2 cut(s)	66, 108
DpnII	GATC	2 cut(s)	64, 106
DriI	GACNNNNNGTC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	370
Eam1105I	GACNNNNNGTC	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	436
Eco47I	GGWCC	2 cut(s)	390, 466
EcoRII	CCWGG	2 cut(s)	324, 538
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaiI	YATR	7 cut(s)	35, 202, 204, 246, 342, 378, 404
FaqI	GGGAC	2 cut(s)	376, 413
Fnu4HI	GCNGC	3 cut(s)	237, 370, 517
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	237, 370, 517
GluI	GCNGC	3 cut(s)	237, 370, 517
GsaI	CCCAGC	2 cut(s)	149, 435
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	2 cut(s)	454, 479
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	2 cut(s)	454, 479
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	79, 133
Hpy188III	TCNNGA	2 cut(s)	62, 479
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	3 cut(s)	32, 409, 558
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	5 cut(s)	83, 211, 239, 421, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	64, 106
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	2 cut(s)	223, 528
LweI	GCATC	3 cut(s)	70, 132, 198
MaeII	ACGT	1 cut(s)	357
MalI	GATC	2 cut(s)	66, 108
MboI	GATC	2 cut(s)	64, 106
MboII	GAAGA	2 cut(s)	266, 543
MflI	RGATCY	2 cut(s)	64, 106
MluCI	AATT	4 cut(s)	36, 45, 84, 381
MnlI	CCTC	8 cut(s)	148, 171, 244, 356, 410, 461, 479, 533
MroI	TCCGGA	1 cut(s)	478
MseI	TTAA	2 cut(s)	87, 159
MspI	CCGG	2 cut(s)	454, 479
MspR9I	CCNGG	2 cut(s)	326, 540
MvaI	CCWGG	2 cut(s)	326, 540
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	2 cut(s)	64, 106
NlaIV	GGNNCC	4 cut(s)	108, 130, 323, 392
PaqCI	CACCTGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	3 cut(s)	238, 371, 518
Psp6I	CCWGG	2 cut(s)	324, 538
PspFI	CCCAGC	2 cut(s)	145, 431
PspGI	CCWGG	2 cut(s)	324, 538
PspN4I	GGNNCC	4 cut(s)	108, 130, 323, 392
PspPI	GGNCC	2 cut(s)	390, 466
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	64, 106
SaqAI	TTAA	2 cut(s)	87, 159
SatI	GCNGC	3 cut(s)	237, 370, 517
Sau3AI	GATC	2 cut(s)	64, 106
Sau96I	GGNCC	2 cut(s)	390, 466
ScrFI	CCNGG	2 cut(s)	326, 540
SetI	ASST	7 cut(s)	55, 159, 226, 308, 330, 360, 525
SfaNI	GCATC	3 cut(s)	70, 132, 198
SinI	GGWCC	2 cut(s)	390, 466
Sse9I	AATT	4 cut(s)	36, 45, 84, 381
SsiI	CCGC	3 cut(s)	126, 369, 472
StyD4I	CCNGG	2 cut(s)	324, 538
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	3 cut(s)	32, 409, 558
TaiI	ACGT	1 cut(s)	360
TaqII	GACCGA	1 cut(s)	378
TasI	AATT	4 cut(s)	36, 45, 84, 381
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	87, 159
Tru9I	TTAA	2 cut(s)	87, 159
TscAI	CASTG	1 cut(s)	338
TseI	GCWGC	2 cut(s)	236, 516
TspDTI	ATGAA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	390, 466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.