Rw3G029240

Protein SUPPRESSOR OF FRI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0020743
Physical Location & Seq
Reverse (-)
44770939 .. 44777847
6909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029240.1

Sequence Viewer

Length: 606 bp
ATGAATTGGAAATTTGGAATTCGAATTGGTATTGTCCTCTACACTCATATTGATAATCTGGGCTTCGTATTGATTCTATTGAAGAAAAGAAACTTGTATAATCAGGTTGTCAACTTGACACTTGTTGATCTTCCTGGGCTTACAAAAGTTTTTGTTGAGGGTCAGCTCGATAGTATTATGCAGGACATTGAAAATATGGTTCGCTCCTACATTGAGAAGGATAGGAGGGATTTGACAGATATTGAAATATATGGGATGCAAGGAATCCCACCTGATGTCTTGGCTGCACATTATGGAGAGGAAGAATACGACGCCCCGTCAAAAATGGCTAAATGGAAATCCCATCAACTCAGCTTTTTGGTGGTGTGGTGCCAGGTTCACTGGGGATATATCCTCCCTAACCACGTTTTGAAATGCGGCCAATATACAATTCATCGGTCCCAATGCCTCATAACGGTTGGCAAGTTGCACCCCGTCCCCAGCCTTGGTATCCACAGCCTCCGGCAGTCTCTAGTCCTCCGCCTTCCGGATTGGGTTCCCACTTCTAGAGCACCATCCAACTTGCTAAAACCCGGCGAAACACTGGCAGTGGAAGAGCTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000075 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0001578 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008270 GO:0008608 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015631 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030071 GO:0031109 GO:0031323 GO:0031326 GO:0031577 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046785 GO:0046872 GO:0046914 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0051128 GO:0051129 GO:0051171 GO:0051225 GO:0051252 GO:0051258 GO:0051276 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070925 GO:0071173 GO:0071174 GO:0071840 GO:0080090 GO:0090307 GO:0097435 GO:0098687 GO:0098813 GO:0140014 GO:0140110 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902850 GO:1903047 GO:1903506 GO:1905818 GO:1905819 GO:1990047 GO:2000112 GO:2000816 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.97

Weight (kDa)

7.09

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020743)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004178.1_g000004
rosa_rugosa Rorug01G0064100
rosa_samantha Rh2CG593500 Rh6AG146500 Rh6DG259000
rosa_wichuraiana Rw3G029240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 526
AciI CCGC 2 cut(s) 417, 520
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 11, 18
AcyI GRCGYC 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 454, 485, 526
AgsI TTSAA 4 cut(s) 82, 191, 245, 412
AhdI GACNNNNNGTC 1 cut(s) 316
AjnI CCWGG 2 cut(s) 133, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AluBI AGCT 3 cut(s) 166, 354, 598
AluI AGCT 3 cut(s) 166, 354, 598
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 513
Aor13HI TCCGGA 1 cut(s) 526
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 11, 18
AspS9I GGNCC 1 cut(s) 438
AsuC2I CCSGG 1 cut(s) 573
AsuII TTCGAA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 438
BanI GGYRCC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 351, 562
BciT130I CCWGG 2 cut(s) 135, 374
BciVI GTATCC 1 cut(s) 500
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 2 cut(s) 512, 546
BfuI GTATCC 1 cut(s) 500
BisI GCNGC 2 cut(s) 285, 418
BlsI GCNGC 2 cut(s) 286, 419
Bme1390I CCNGG 3 cut(s) 135, 374, 573
Bme18I GGWCC 1 cut(s) 438
BmeRI GACNNNNNGTC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 3 cut(s) 371, 440, 537
BmrFI CCNGG 3 cut(s) 135, 374, 573
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 391
Bpu14I TTCGAA 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 134, 484
BsaWI WCCGGW 1 cut(s) 526
Bsc4I CCNNNNNNNGG 3 cut(s) 454, 485, 526
Bse1I ACTGG 2 cut(s) 386, 588
BseAI TCCGGA 1 cut(s) 526
BseBI CCWGG 2 cut(s) 135, 374
BseDI CCNNGG 2 cut(s) 134, 484
BseGI GGATG 2 cut(s) 261, 554
BseLI CCNNNNNNNGG 3 cut(s) 454, 485, 526
BseMII CTCAG 1 cut(s) 364
BseNI ACTGG 2 cut(s) 386, 588
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 479
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 3 cut(s) 502, 527, 573
BslFI GGGAC 2 cut(s) 424, 461
BslI CCNNNNNNNGG 3 cut(s) 454, 485, 526
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 2 cut(s) 424, 461
BsnI GGCC 1 cut(s) 420
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 553
Bsp13I TCCGGA 1 cut(s) 526
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 2 cut(s) 417, 520
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 371, 440, 537
BspQI GCTCTTC 1 cut(s) 588
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 386, 588
BssECI CCNNGG 2 cut(s) 134, 484
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 484
Bst2UI CCWGG 2 cut(s) 135, 374
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 588
BstACI GRCGYC 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 350
BstF5I GGATG 2 cut(s) 261, 554
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 2 cut(s) 135, 374
BstSCI CCNGG 3 cut(s) 133, 372, 571
BstV1I GCAGC 1 cut(s) 271
BsuI GTATCC 1 cut(s) 500
BsuRI GGCC 1 cut(s) 420
BtsCI GGATG 2 cut(s) 261, 554
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 3 cut(s) 379, 581, 594
Cfr13I GGNCC 1 cut(s) 438
CseI GACGC 1 cut(s) 320
DdeI CTNAG 1 cut(s) 350
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
DriI GACNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 588
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 1 cut(s) 509
Eco130I CCWWGG 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 438
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 133, 372
EcoT14I CCWWGG 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 484
FaqI GGGAC 2 cut(s) 424, 461
Fnu4HI GCNGC 2 cut(s) 285, 418
FokI GGATG 2 cut(s) 268, 541
Fsp4HI GCNGC 2 cut(s) 285, 418
FspBI CTAG 2 cut(s) 512, 546
GluI GCNGC 2 cut(s) 285, 418
GsaI CCCAGC 1 cut(s) 483
HaeIII GGCC 1 cut(s) 420
HapII CCGG 3 cut(s) 502, 527, 573
HgaI GACGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 312
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 73, 264
HpaII CCGG 3 cut(s) 502, 527, 573
Hpy166II GTNNAC 2 cut(s) 112, 379
Hpy188III TCNNGA 3 cut(s) 527, 546, 603
Hpy8I GTNNAC 2 cut(s) 112, 379
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 211, 533
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 181, 259, 287, 469
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 405
Hsp92I GRCGYC 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 526
Kzo9I GATC 1 cut(s) 127
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 246
MaeI CTAG 2 cut(s) 512, 546
MaeII ACGT 1 cut(s) 405
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 4 cut(s) 94, 122, 314, 605
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 5 cut(s) 4, 11, 18, 24, 429
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 8 cut(s) 47, 151, 219, 292, 404, 458, 509, 527
MroI TCCGGA 1 cut(s) 526
MspI CCGG 3 cut(s) 502, 527, 573
MspR9I CCNGG 3 cut(s) 135, 374, 573
MvaI CCWGG 2 cut(s) 135, 374
NciI CCSGG 1 cut(s) 573
NdeII GATC 1 cut(s) 127
NlaIV GGNNCC 3 cut(s) 371, 440, 537
NspV TTCGAA 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 73, 264
PkrI GCNGC 2 cut(s) 286, 419
Psp6I CCWGG 2 cut(s) 133, 372
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 2 cut(s) 133, 372
PspN4I GGNNCC 3 cut(s) 371, 440, 537
PspPI GGNCC 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 588
SatI GCNGC 2 cut(s) 285, 418
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 438
ScrFI CCNGG 3 cut(s) 135, 374, 573
SduI GDGCHC 1 cut(s) 553
SetI ASST 7 cut(s) 108, 168, 274, 356, 378, 408, 600
SfaNI GCATC 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 22
SinI GGWCC 1 cut(s) 438
Sse9I AATT 5 cut(s) 4, 11, 18, 24, 429
SsiI CCGC 2 cut(s) 417, 520
SspMI CTAG 2 cut(s) 512, 546
StyD4I CCNGG 3 cut(s) 133, 372, 571
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 22, 168
TaqII GACCGA 1 cut(s) 426
TasI AATT 5 cut(s) 4, 11, 18, 24, 429
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 2 cut(s) 73, 264
TscAI CASTG 3 cut(s) 386, 588, 594
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 17, 422
TspRI CASTG 3 cut(s) 386, 588, 594
VpaK11BI GGWCC 1 cut(s) 438
XapI RAATTY 2 cut(s) 11, 18
XbaI TCTAGA 1 cut(s) 545
XspI CTAG 2 cut(s) 512, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.