Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0020743

Physical Location & Seq

Genomic Coordinates Forward (+)

76974070 .. 76982672

Gene Structure 8603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG593500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCTCAAAGTGTGCACATACCTATTGACATGGATAGGAGGGATTTGACAGATATTGAAATATATGGGATGCAAGGAATCCCACCTGATGTCTTGGCTGCACATTATGGAGAGGAAGAATACGACGCCCCGTCAAAAATGGCTAAATGGAAATCCCATCAACTCAGCTTTTTGGTGGTGTGGTGCCAGGTTCACTGGGGATATATCCTCCCTAACCACGTTTTGAAATGCGGCCAATATACAATTCATCGGTCCCAATGCCTCATAACGGTTGGCAAGTTGCACCCCGTCCCCAGCCTTGGTATCCACAGCCTCCGGCAGTCTCTGGTCCTCCGCCTTCCGGATTGGGTTATTCACAACAGCCATTGTTTCCTGTGCAGCCACCTCTACCATCAACCCCCTGGACTTCAATCTTCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000075 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0001578 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008270 GO:0008608 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015631 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030071 GO:0031109 GO:0031323 GO:0031326 GO:0031577 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046785 GO:0046872 GO:0046914 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0051128 GO:0051129 GO:0051171 GO:0051225 GO:0051252 GO:0051258 GO:0051276 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070925 GO:0071173 GO:0071174 GO:0071840 GO:0080090 GO:0090307 GO:0097435 GO:0098687 GO:0098813 GO:0140014 GO:0140110 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902850 GO:1903047 GO:1903506 GO:1905818 GO:1905819 GO:1990047 GO:2000112 GO:2000816 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.04

Weight (kDa)

6.85

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020743)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004178.1_g000004
rosa_rugosa	Rorug01G0064100
rosa_samantha	Rh2CG593500 Rh6AG146500 Rh6DG259000
rosa_wichuraiana	Rw3G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	2 cut(s)	231, 334
AcoI	YGGCCR	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	268, 299, 340
AgsI	TTSAA	3 cut(s)	59, 226, 410
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	186, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	327
Alw44I	GTGCAC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	325
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	1 cut(s)	232
ApaLI	GTGCAC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	98, 378
AspS9I	GGNCC	2 cut(s)	252, 328
AvaII	GGWCC	2 cut(s)	252, 328
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	85, 390
BccI	CCATC	2 cut(s)	165, 399
BciT130I	CCWGG	2 cut(s)	188, 402
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	3 cut(s)	99, 232, 379
BlsI	GCNGC	3 cut(s)	100, 233, 380
Bme1390I	CCNGG	2 cut(s)	188, 402
Bme18I	GGWCC	2 cut(s)	252, 328
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	252, 328
BmiI	GGNNCC	2 cut(s)	185, 254
BmrFI	CCNGG	2 cut(s)	188, 402
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	298, 400
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 299, 340
Bse1I	ACTGG	1 cut(s)	200
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	188, 402
BseDI	CCNNGG	2 cut(s)	298, 400
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	268, 299, 340
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	85, 390
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	2 cut(s)	84, 397
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	316, 341
BslFI	GGGAC	2 cut(s)	238, 275
BslI	CCNNNNNNNGG	3 cut(s)	268, 299, 340
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	238, 275
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp13I	TCCGGA	1 cut(s)	340
BspACI	CCGC	2 cut(s)	231, 334
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	177
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	185, 254
BspT107I	GGYRCC	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	298, 400
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	2 cut(s)	188, 402
Bst4CI	ACNGT	2 cut(s)	271, 420
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	327
BstNI	CCWGG	2 cut(s)	188, 402
BstSCI	CCNGG	2 cut(s)	186, 400
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	85, 390
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	252, 328
CseI	GACGC	1 cut(s)	134
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	9 cut(s)	5, 98, 143, 168, 234, 297, 312, 363, 381
CviKI_1	RGCY	9 cut(s)	5, 98, 143, 168, 234, 297, 312, 363, 381
DdeI	CTNAG	1 cut(s)	164
DriI	GACNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	232
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	252, 328
EcoRII	CCWGG	2 cut(s)	186, 400
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	34
FaiI	YATR	8 cut(s)	20, 32, 64, 66, 108, 204, 240, 266
FaqI	GGGAC	2 cut(s)	238, 275
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	99, 232, 379
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	99, 232, 379
GluI	GCNGC	3 cut(s)	99, 232, 379
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	2 cut(s)	316, 341
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	316, 341
Hpy166II	GTNNAC	2 cut(s)	16, 193
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	16, 193
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	2 cut(s)	271, 420
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	5 cut(s)	16, 73, 101, 283, 378
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	34
Kpn2I	TCCGGA	1 cut(s)	340
Lsp1109I	GCAGC	2 cut(s)	85, 390
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	219
MboII	GAAGA	2 cut(s)	128, 405
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	7 cut(s)	33, 106, 218, 272, 323, 341, 395
MroI	TCCGGA	1 cut(s)	340
MspI	CCGG	2 cut(s)	316, 341
MspR9I	CCNGG	2 cut(s)	188, 402
MvaI	CCWGG	2 cut(s)	188, 402
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	185, 254
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	100, 233, 380
Psp6I	CCWGG	2 cut(s)	186, 400
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	2 cut(s)	186, 400
PspN4I	GGNNCC	2 cut(s)	185, 254
PspPI	GGNCC	2 cut(s)	252, 328
PstNI	CAGNNNCTG	1 cut(s)	325
SatI	GCNGC	3 cut(s)	99, 232, 379
Sau96I	GGNCC	2 cut(s)	252, 328
ScrFI	CCNGG	2 cut(s)	188, 402
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	6 cut(s)	25, 88, 170, 192, 222, 387
SfaNI	GCATC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	252, 328
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	2 cut(s)	231, 334
StyD4I	CCNGG	2 cut(s)	186, 400
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	271, 420
TaiI	ACGT	1 cut(s)	222
TaqII	GACCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	243
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	78
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	2 cut(s)	98, 378
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	252, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.