Rh6DG259000

Protein SUPPRESSOR OF FRI

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
44967037 .. 44986503
19467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG259000.1

Sequence Viewer

Length: 399 bp
ATGGCGGTGGCTGGGAGGGATTCGACAGATATTGAAATATATGGGATGCAAGAAATCCCACCTGATGTCTTGGCTGCACATTATGGAGAGGAAGAAGACAACGCCCCGTCAAAAATGGCTAAGCGGAAATCCCATCAACTCAGCTTGTTGGCGGTGTGGTGCCAGGTTCACTTGCTGATTAGAAATCCTGCATCTGCTGTCATTCAAATCTTTTGGTGCAAAGAGCAAAAGATAGAACTGCAAAGCCGGGCTGCGTTCCTTACTGACCCAACATTTGTTCATACAGATATGGATGCTAAAGTCAAAGCAATGATCAAGTTCATTGAAGAAGATGCAGACTCTTTTGCATTTATTGATTCTTATATAGATGATATGAGGTTGAAACTTGAAGAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000075 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0001578 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008270 GO:0008608 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015631 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030071 GO:0031109 GO:0031323 GO:0031326 GO:0031577 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046785 GO:0046872 GO:0046914 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0051128 GO:0051129 GO:0051171 GO:0051225 GO:0051252 GO:0051258 GO:0051276 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070925 GO:0071173 GO:0071174 GO:0071840 GO:0080090 GO:0090307 GO:0097435 GO:0098687 GO:0098813 GO:0140014 GO:0140110 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902850 GO:1903047 GO:1903506 GO:1905818 GO:1905819 GO:1990047 GO:2000112 GO:2000816 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.99

Weight (kDa)

4.8

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020743)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004178.1_g000004
rosa_rugosa Rorug01G0064100
rosa_samantha Rh2CG593500 Rh6AG146500 Rh6DG259000
rosa_wichuraiana Rw3G029240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 159
AciI CCGC 3 cut(s) 5, 124, 152
AgsI TTSAA 5 cut(s) 35, 206, 326, 382, 389
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 74, 251
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsuC2I CCSGG 1 cut(s) 248
BanI GGYRCC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 61, 238
BccI CCATC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 164
BclI TGATCA 1 cut(s) 312
BcnI CCSGG 1 cut(s) 248
BisI GCNGC 2 cut(s) 75, 252
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 2 cut(s) 76, 253
Bme1390I CCNGG 2 cut(s) 164, 248
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 164, 248
BmsI GCATC 4 cut(s) 36, 200, 283, 322
BpiI GAAGAC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 51, 298
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 61, 238
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 247
Bsp143I GATC 1 cut(s) 312
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 3 cut(s) 5, 124, 152
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 315
BssMI GATC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 120, 140
BstF5I GGATG 2 cut(s) 51, 298
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 162, 246
BstV1I GCAGC 2 cut(s) 61, 238
BstV2I GAAGAC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 51, 298
CviJI RGCY 6 cut(s) 11, 74, 119, 144, 246, 251
CviKI_1 RGCY 6 cut(s) 11, 74, 119, 144, 246, 251
DdeI CTNAG 2 cut(s) 120, 140
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 162
FaiI YATR 8 cut(s) 40, 42, 84, 282, 290, 363, 365, 374
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 75, 252
FokI GGATG 2 cut(s) 58, 305
Fsp4HI GCNGC 2 cut(s) 75, 252
GluI GCNGC 2 cut(s) 75, 252
GsaI CCCAGC 1 cut(s) 15
HapII CCGG 1 cut(s) 247
HinfI GANTC 3 cut(s) 20, 338, 356
HpaII CCGG 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4V TGCA 7 cut(s) 49, 77, 191, 219, 241, 335, 347
HpyF3I CTNAG 2 cut(s) 120, 140
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 5 cut(s) 75, 149, 176, 201, 260
Lsp1109I GCAGC 2 cut(s) 61, 238
LweI GCATC 4 cut(s) 36, 200, 283, 322
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 4 cut(s) 104, 107, 338, 341
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 4 cut(s) 9, 82, 369, 385
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 164, 248
MvaI CCWGG 1 cut(s) 164
NciI CCSGG 1 cut(s) 248
NdeII GATC 1 cut(s) 312
NlaIV GGNNCC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 20, 356
PkrI GCNGC 2 cut(s) 76, 253
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 161
SatI GCNGC 2 cut(s) 75, 252
Sau3AI GATC 1 cut(s) 312
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 164, 248
SetI ASST 4 cut(s) 64, 146, 168, 380
SfaNI GCATC 4 cut(s) 36, 200, 283, 322
SsiI CCGC 3 cut(s) 5, 124, 152
StyD4I CCNGG 2 cut(s) 162, 246
TaqI TCGA 1 cut(s) 23
TfiI GAWTC 2 cut(s) 20, 356
TseI GCWGC 2 cut(s) 74, 251
TspDTI ATGAA 2 cut(s) 269, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.