Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004181.1

Orthogroup ID

OG0019491

Physical Location & Seq

Genomic Coordinates Forward (+)

16197 .. 18105

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004181.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgtcccacattcctaatcatctttgtaagacttgtgttcattcatcggccctgttactgtcccttattgaagtaccggagcttcagtactcagaagaagttaactaccttggacagctgagtcacccaaatcttgtaaaacttattggttactgccgagaggatgacaagcggcttctggtgtatgaatttgtgcctaaaggcagtttggaaaatcatattcttagaaaggtttcttcttgctttcaaacactgtcatggaacctgcgcatgaagattgcactcggtgctgctaaggctctagcatttcttcatgatgaggcaaaatgcatatatgtggactttgagacatctaagatccttcttgattcaaactataatgtcaaaatatatggttacggtttagcccaggaagggcctgaaggttatagaacccgtctcttggatatggataaacttccttggtatgaggataaagtgattgaccacaacggcgggccttatagagctcctgagtatatatttgcaggtgcagatcacttgacccccagaagcgatgtgtacagttttggagttgttctgctcgaaatcttggcaggccgacgagcaattgacagtaaccggctagtggcagaacgtgatttagttcggtttgttattaccaaggttcccagacaaatatgtcatcaaaaagaaaaaaaggttctcagacaaatagttcgccaaattattgacagtcgtatggaaggccagtacccttggtctggagctgtcaaagcacttgaacttgcaagacaatgcctgtcaaattactccaagcataggccagacatgcatcaggtggtagaaatattggagaacctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

288

Amino Acids

33.08

Weight (kDa)

8.09

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019491)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027273
rosa_multiflora	Rmu_sc0000210.1_g000009 Rmu_sc0004181.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050410
rosa_samantha	Rh5AG206800 Rh5BG205500 Rh5CG227500 Rh5DG209200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
AasI	GACNNNNNNGTC	2 cut(s)	120, 681
Acc16I	TGCGCA	1 cut(s)	269
Acc36I	ACCTGC	2 cut(s)	273, 518
AciI	CCGC	2 cut(s)	172, 495
AclWI	GGATC	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	2 cut(s)	68, 441
AdeI	CACNNNGTG	1 cut(s)	287
AfaI	GTAC	4 cut(s)	75, 89, 563, 755
AfiI	CCNNNNNNNGG	5 cut(s)	414, 442, 628, 764, 822
AgsI	TTSAA	4 cut(s)	71, 248, 372, 785
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	4 cut(s)	82, 118, 509, 770
AluI	AGCT	4 cut(s)	82, 118, 509, 770
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	341, 443
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	6 cut(s)	48, 416, 497, 598, 748, 824
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	2 cut(s)	702, 734
Asp700I	GAANNNNTTC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	49, 416, 497
AsuHPI	GGTGA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	511
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	508
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	2 cut(s)	341, 443
BfaI	CTAG	2 cut(s)	302, 626
BfuAI	ACCTGC	2 cut(s)	273, 518
BisI	GCNGC	2 cut(s)	173, 291
BlsI	GCNGC	2 cut(s)	174, 292
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	410
BmgT120I	GGNCC	3 cut(s)	49, 416, 497
BmiI	GGNNCC	2 cut(s)	263, 669
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	844
BpmI	CTGGAG	1 cut(s)	786
Bpu10I	CCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	5 cut(s)	109, 408, 461, 663, 758
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	5 cut(s)	414, 442, 628, 764, 822
Bse118I	RCCGGY	1 cut(s)	621
Bse1I	ACTGG	1 cut(s)	751
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	5 cut(s)	109, 408, 461, 663, 758
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	5 cut(s)	414, 442, 628, 764, 822
BseMII	CTCAG	4 cut(s)	105, 110, 504, 721
BseNI	ACTGG	1 cut(s)	751
BseXI	GCAGC	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	6 cut(s)	50, 418, 499, 600, 750, 826
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	77, 622
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	5 cut(s)	414, 442, 628, 764, 822
BsmAI	GTCTC	2 cut(s)	341, 443
BsmBI	CGTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	6 cut(s)	50, 418, 499, 600, 750, 826
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	357, 535
BspACI	CCGC	2 cut(s)	172, 495
BspANI	GGCC	6 cut(s)	50, 418, 499, 600, 750, 826
BspCNI	CTCAG	4 cut(s)	104, 111, 505, 720
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	263, 669
BspMI	ACCTGC	2 cut(s)	273, 518
BspPI	GGATC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	621
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	751
BssAI	RCCGGY	1 cut(s)	621
BssECI	CCNNGG	5 cut(s)	109, 408, 461, 663, 758
BssMI	GATC	2 cut(s)	357, 535
BssT1I	CCWWGG	4 cut(s)	109, 461, 663, 758
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	6 cut(s)	60, 255, 401, 566, 617, 737
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	497, 598
BstDEI	CTNAG	7 cut(s)	91, 119, 224, 294, 354, 513, 707
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	2 cut(s)	360, 538
BstMAI	GTCTC	2 cut(s)	341, 443
BstMBI	GATC	2 cut(s)	357, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 296, 776, 832
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	835
BstSCI	CCNGG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	6 cut(s)	50, 418, 499, 600, 750, 826
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	251
BveI	ACCTGC	2 cut(s)	273, 518
Cac8I	GCNNGC	2 cut(s)	497, 598
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	621
Cfr13I	GGNCC	3 cut(s)	49, 416, 497
Csp6I	GTAC	4 cut(s)	74, 88, 562, 754
CviAII	CATG	4 cut(s)	258, 271, 314, 832
CviQI	GTAC	4 cut(s)	74, 88, 562, 754
DdeI	CTNAG	7 cut(s)	91, 119, 224, 294, 354, 513, 707
DpnI	GATC	2 cut(s)	359, 537
DpnII	GATC	2 cut(s)	357, 535
DraIII	CACNNNGTG	1 cut(s)	287
DrdI	GACNNNNNNGTC	2 cut(s)	120, 681
DseDI	GACNNNNNNGTC	2 cut(s)	120, 681
Ecl136II	GAGCTC	1 cut(s)	509
Eco130I	CCWWGG	4 cut(s)	109, 461, 663, 758
Eco24I	GRGCYC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	509
Eco57I	CTGAAG	2 cut(s)	68, 441
EcoICRI	GAGCTC	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	4 cut(s)	109, 461, 663, 758
EcoT22I	ATGCAT	2 cut(s)	332, 837
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	4 cut(s)	109, 461, 663, 758
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	4 cut(s)	261, 274, 317, 835
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	257, 270, 313, 831
FauI	CCCGC	1 cut(s)	488
Fnu4HI	GCNGC	2 cut(s)	173, 291
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	2 cut(s)	173, 291
FspBI	CTAG	2 cut(s)	302, 626
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	2 cut(s)	173, 291
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	6 cut(s)	50, 418, 499, 600, 750, 826
HapII	CCGG	2 cut(s)	77, 622
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	261, 274, 317, 835
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	121, 368
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	77, 622
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	3 cut(s)	103, 340, 562
Hpy188I	TCNGA	2 cut(s)	94, 710
Hpy188III	TCNNGA	4 cut(s)	314, 365, 512, 765
Hpy8I	GTNNAC	3 cut(s)	103, 340, 562
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	4 cut(s)	371, 407, 416, 740
HpyCH4III	ACNGT	6 cut(s)	60, 255, 401, 566, 617, 737
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	6 cut(s)	281, 330, 527, 533, 791, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 296, 776, 832
HpyF3I	CTNAG	7 cut(s)	91, 119, 224, 294, 354, 513, 707
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	4 cut(s)	261, 274, 317, 835
HspAI	GCGC	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	357, 535
LmnI	GCTCC	3 cut(s)	79, 514, 767
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	844
MaeI	CTAG	2 cut(s)	302, 626
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	5 cut(s)	54, 122, 149, 395, 617
MalI	GATC	2 cut(s)	359, 537
MboI	GATC	2 cut(s)	357, 535
MboII	GAAGA	4 cut(s)	107, 228, 286, 302
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	4 cut(s)	188, 609, 726, 808
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	3 cut(s)	154, 313, 463
Mph1103I	ATGCAT	2 cut(s)	332, 837
MroXI	GAANNNNTTC	1 cut(s)	232
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	2 cut(s)	256, 335
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	2 cut(s)	77, 622
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	4 cut(s)	287, 296, 776, 832
NdeII	GATC	2 cut(s)	357, 535
NlaIII	CATG	4 cut(s)	261, 274, 317, 835
NlaIV	GGNNCC	2 cut(s)	263, 669
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	122
NsbI	TGCGCA	1 cut(s)	269
NsiI	ATGCAT	2 cut(s)	332, 837
NspI	RCATGY	1 cut(s)	835
PagI	TCATGA	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	174, 292
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	263, 669
PspPI	GGNCC	3 cut(s)	49, 416, 497
PsuI	RGATCY	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	4 cut(s)	75, 89, 563, 755
RsaNI	GTAC	4 cut(s)	74, 88, 562, 754
RseI	CAYNNNNRTG	2 cut(s)	256, 335
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	173, 291
Sau3AI	GATC	2 cut(s)	357, 535
Sau96I	GGNCC	3 cut(s)	49, 416, 497
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	844
SmiMI	CAYNNNNRTG	2 cut(s)	256, 335
Sse9I	AATT	4 cut(s)	188, 609, 726, 808
SsiI	CCGC	2 cut(s)	172, 495
SspI	AATATT	1 cut(s)	852
SspMI	CTAG	2 cut(s)	302, 626
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	4 cut(s)	109, 461, 663, 758
TaaI	ACNGT	6 cut(s)	60, 255, 401, 566, 617, 737
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	1 cut(s)	585
TasI	AATT	4 cut(s)	188, 609, 726, 808
TatI	WGTACW	2 cut(s)	87, 561
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	5 cut(s)	29, 33, 201, 287, 302
TspRI	CASTG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	835
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	2 cut(s)	302, 626
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	2 cut(s)	332, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.