Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019491

Physical Location & Seq

Genomic Coordinates Forward (+)

70963444 .. 70967454

Gene Structure 4011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCATATATGTGTGGACTTTGAGACATCTAAGATCCTTCTTGATTCAAACTATAATGTCAAAATATATGGTTATGGTTTAGCCCAGGAAGGGCCTGAAGGTTATAGAACCCGTCTCTTGGATATAGATGAACTTCCTCGGTATGAGGATATATTGTTTGAGCACAATGGCGGGCGTTATACATCTCCTGAGTATATATCTGCAGGTGAAGATCACTTGACCCCCAGAAGCGATGTGTACAGTTTTGGAGTTGTTCTACTCGAAATCTTGTCAGGCCGACGAGCAATTGACAGAAACCGGCCAGCGGCAGAACATGATTTAGTTCAGTCTGCTTTTACCAAGGTTCCCAGGAAACAAAGAGTTCACCAAATTATTGACAGTCGTATGGAAGGCCAGTACTCTATGTCTGGAGCTCTCAAAGCACTTGAACTTGCAAGACAATGCCTGTCAGTGGACCCCAAGCTTAGGCCAGACATGCATCAGGTGATGGAAATATTGGAGAACCTTCAGTCCTCTGGTGACAGGCACTACAAGAGAAAATGTCATCAGCGACAACCAAAGTTGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

189

Amino Acids

21.77

Weight (kDa)

6.71

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 164	9e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 166	4.3e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019491)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027273
rosa_multiflora	Rmu_sc0000210.1_g000009 Rmu_sc0004181.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050410
rosa_samantha	Rh5AG206800 Rh5BG205500 Rh5CG227500 Rh5DG209200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AciI	CCGC	2 cut(s)	171, 305
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	117, 491
AfaI	GTAC	2 cut(s)	239, 398
AfiI	CCNNNNNNNGG	5 cut(s)	90, 118, 304, 451, 465
AgsI	TTSAA	2 cut(s)	48, 428
AjnI	CCWGG	2 cut(s)	84, 347
AloI	GAACNNNNNNTCC	2 cut(s)	494, 526
AluBI	AGCT	2 cut(s)	413, 463
AluI	AGCT	2 cut(s)	413, 463
Alw21I	GWGCWC	2 cut(s)	165, 415
Alw26I	GTCTC	2 cut(s)	17, 119
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	5 cut(s)	92, 274, 299, 391, 467
AspS9I	GGNCC	2 cut(s)	92, 454
AsuHPI	GGTGA	4 cut(s)	218, 356, 496, 530
AvaII	GGWCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	165, 415
BccI	CCATC	1 cut(s)	481
BciT130I	CCWGG	2 cut(s)	86, 349
BcoDI	GTCTC	2 cut(s)	17, 119
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	86, 349
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	92, 454
BmiI	GGNNCC	2 cut(s)	345, 456
BmrFI	CCNGG	2 cut(s)	86, 349
BmsI	GCATC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	464
BsaJI	CCNNGG	4 cut(s)	84, 137, 339, 347
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 118, 304, 451, 465
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	86, 349
BseDI	CCNNGG	4 cut(s)	84, 137, 339, 347
BseLI	CCNNNNNNNGG	5 cut(s)	90, 118, 304, 451, 465
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	394
BshFI	GGCC	5 cut(s)	94, 276, 301, 393, 469
BsiHKAI	GWGCWC	2 cut(s)	165, 415
BsiSI	CCGG	1 cut(s)	298
BslI	CCNNNNNNNGG	5 cut(s)	90, 118, 304, 451, 465
BsmAI	GTCTC	2 cut(s)	17, 119
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	5 cut(s)	94, 276, 301, 393, 469
Bsp1286I	GDGCHC	2 cut(s)	165, 415
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	33, 211
BspACI	CCGC	2 cut(s)	171, 305
BspANI	GGCC	5 cut(s)	94, 276, 301, 393, 469
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	345, 456
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	4 cut(s)	84, 137, 339, 347
BssMI	GATC	2 cut(s)	33, 211
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	86, 349
Bst4CI	ACNGT	2 cut(s)	242, 380
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	173, 303
BstDEI	CTNAG	3 cut(s)	30, 189, 464
BstKTI	GATC	2 cut(s)	36, 214
BstMAI	GTCTC	2 cut(s)	17, 119
BstMBI	GATC	2 cut(s)	33, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 475
BstNI	CCWGG	2 cut(s)	86, 349
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	84, 347
BstSFI	CTRYAG	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	5 cut(s)	94, 276, 301, 393, 469
BtgZI	GCGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	173, 303
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	92, 454
Csp6I	GTAC	2 cut(s)	238, 397
CviAII	CATG	2 cut(s)	314, 475
CviJI	RGCY	8 cut(s)	83, 94, 276, 301, 393, 413, 463, 469
CviKI_1	RGCY	8 cut(s)	83, 94, 276, 301, 393, 413, 463, 469
CviQI	GTAC	2 cut(s)	238, 397
DdeI	CTNAG	3 cut(s)	30, 189, 464
DpnI	GATC	2 cut(s)	35, 213
DpnII	GATC	2 cut(s)	33, 211
EaeI	YGGCCR	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	117, 491
EcoICRI	GAGCTC	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	84, 347
EcoT14I	CCWWGG	1 cut(s)	339
EcoT22I	ATGCAT	2 cut(s)	6, 480
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	339
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	317, 478
FatI	CATG	2 cut(s)	313, 474
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	1 cut(s)	306
GluI	GCNGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	5 cut(s)	94, 276, 301, 393, 469
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	2 cut(s)	317, 478
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	4 cut(s)	218, 356, 496, 530
Hpy166II	GTNNAC	4 cut(s)	16, 238, 364, 454
Hpy188III	TCNNGA	3 cut(s)	41, 188, 408
Hpy8I	GTNNAC	4 cut(s)	16, 238, 364, 454
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	5 cut(s)	47, 83, 92, 383, 515
HpyCH4III	ACNGT	2 cut(s)	242, 380
HpyCH4V	TGCA	4 cut(s)	4, 203, 434, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 475
HpyF3I	CTNAG	3 cut(s)	30, 189, 464
Hsp92II	CATG	2 cut(s)	317, 478
Kzo9I	GATC	2 cut(s)	33, 211
LmnI	GCTCC	1 cut(s)	410
LweI	GCATC	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	2 cut(s)	35, 213
MboI	GATC	2 cut(s)	33, 211
MboII	GAAGA	1 cut(s)	221
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	165, 415
MluCI	AATT	2 cut(s)	285, 369
MnlI	CCTC	3 cut(s)	139, 147, 523
Mph1103I	ATGCAT	2 cut(s)	6, 480
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	86, 349
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	86, 349
MwoI	GCNNNNNNNGC	2 cut(s)	419, 475
NdeII	GATC	2 cut(s)	33, 211
NlaIII	CATG	2 cut(s)	317, 478
NlaIV	GGNNCC	2 cut(s)	345, 456
NmuCI	GTSAC	1 cut(s)	518
NsiI	ATGCAT	2 cut(s)	6, 480
NspI	RCATGY	1 cut(s)	478
PaqCI	CACCTGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	84, 347
PspGI	CCWGG	2 cut(s)	84, 347
PspN4I	GGNNCC	2 cut(s)	345, 456
PspPI	GGNCC	2 cut(s)	92, 454
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	2 cut(s)	239, 398
RsaNI	GTAC	2 cut(s)	238, 397
RseI	CAYNNNNRTG	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	415
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	33, 211
Sau96I	GGNCC	2 cut(s)	92, 454
ScaI	AGTACT	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	86, 349
SduI	GDGCHC	2 cut(s)	165, 415
SetI	ASST	7 cut(s)	103, 208, 345, 415, 465, 486, 507
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	285, 369
SsiI	CCGC	2 cut(s)	171, 305
SspI	AATATT	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	415
StyD4I	CCNGG	2 cut(s)	84, 347
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	242, 380
TaqI	TCGA	1 cut(s)	261
TasI	AATT	2 cut(s)	285, 369
TatI	WGTACW	2 cut(s)	237, 396
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	44
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	454
XceI	RCATGY	1 cut(s)	478
ZrmI	AGTACT	1 cut(s)	398
Zsp2I	ATGCAT	2 cut(s)	6, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.