Rh5AG206800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019491
Physical Location & Seq
Reverse (-)
24424496 .. 24435771
11276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG206800.1

Sequence Viewer

Length: 1008 bp
ATGGAGCTCAACAACATACCATCTGTGTCGGTGCCTTTATCTCCTCAGACAGAGGGTGAGAGATTGCAGTCCTTCAACTTGAAGAGCTTCCACTATAATGAACTGCGAAGAGCCACCAGGAACTTTCGTCCTGATAGTATTTGTGATCAAGGAGGTTATTATTCTGTCTTTAAGGGGTGGATCGATGAGCAATCGTTCACAGCTGCTATGCCCGGTACCGGCATGGCCGTTGCAATAAAGAGGCTTAACCAAGAAGACATCCTGCAAAGTCGCCAGCCCCTGCAAAGTCACAAGGAATGGATGAACTATAATGTCAAAATATATGGTTATGATGGTTTAGCCGGGGAAGAGCCTGAAGGTTATAGAATCCGTAGATACCGTCTCTTAGATCTGGATTATGAACTTCCTGAGGCTGTATGGGTTGGGCCCAATGTCTCGCCTTATAGAGCTCCTGAGTGTCGATATTCATATCGCTTGACCCCCAGAAGCGATGTGTACAGTTTTGGAGTTGTTCTGCTCGAAATCTTGTCAGGCCAACGAGCAATTGACAGAAACCGGCCAAGGGAACGACATGATTTAGTTCAGTTTGTTTTTACCGAGGTTCCCACGAAACGAAATTTTAGACGTCTCATTATTGACTTTCGTATGAAAGACCAGTACCCTATATCTGGAGCTTTCAAAGCATTTGAACTTGCAAGACAATGCCTGTCAAAGAACCCCAATCATAGGCCAGACATGCATCAGGTGGTAGAAATATTGGAGAACCTTCAGTCCTCTGGTGACAGGGAAGCCTCTGGGACCGCTCAAACTGAATCTGGCCAAAATCTTCATGGAAATTCTTGCAATGATCCCAACTATCACCGGAGCAGAATCAATCGCAGGCCCAAAGCAACAGCTGCTTCTGTTGCCTCTGAAAATCACCTCGGCCTATACAGCCGAGGGATCAAGGAACAAATAGCGGAATCAGCTTTCGTGCTCAGAAGCTGTCAACTCGGTTTCAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

38.49

Weight (kDa)

8.81

Isoelectric Point (pI)

62.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 147 - 253 3.2e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 147 - 251 2.8e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019491)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027273
rosa_multiflora Rmu_sc0000210.1_g000009 Rmu_sc0004181.1_g000006
rosa_roxburghii Rroxscaffold_1G00050410
rosa_samantha Rh5AG206800 Rh5BG205500 Rh5CG227500 Rh5DG209200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 628
Acc65I GGTACC 1 cut(s) 215
AccB1I GGYRCC 2 cut(s) 31, 215
AccBSI CCGCTC 1 cut(s) 803
AciI CCGC 2 cut(s) 801, 959
AclWI GGATC 3 cut(s) 188, 842, 950
AcoI YGGCCR 3 cut(s) 225, 557, 817
AcsI RAATTY 2 cut(s) 616, 835
AcuI CTGAAG 2 cut(s) 375, 752
AcyI GRCGYC 1 cut(s) 625
AfaI GTAC 3 cut(s) 217, 497, 659
AfiI CCNNNNNNNGG 4 cut(s) 218, 562, 668, 726
AgsI TTSAA 4 cut(s) 76, 82, 679, 689
AjnI CCWGG 1 cut(s) 116
AloI GAACNNNNNNTCC 2 cut(s) 755, 787
AluBI AGCT 8 cut(s) 7, 87, 203, 449, 674, 896, 968, 984
AluI AGCT 8 cut(s) 7, 87, 203, 449, 674, 896, 968, 984
Alw21I GWGCWC 3 cut(s) 9, 451, 978
Alw26I GTCTC 3 cut(s) 386, 439, 632
AlwI GGATC 3 cut(s) 188, 842, 950
AlwNI CAGNNNCTG 2 cut(s) 280, 984
AoxI GGCC 8 cut(s) 225, 425, 532, 557, 728, 817, 881, 925
ApaI GGGCCC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 203, 896
ApoI RAATTY 2 cut(s) 616, 835
Asp700I GAANNNNTTC 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 215
AspS9I GGNCC 4 cut(s) 425, 426, 798, 882
AsuC2I CCSGG 2 cut(s) 213, 343
AsuHPI GGTGA 4 cut(s) 68, 791, 851, 911
AvaII GGWCC 1 cut(s) 798
AxyI CCTNAGG 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 819
BanI GGYRCC 2 cut(s) 31, 215
BanII GRGCYC 3 cut(s) 9, 429, 451
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 3 cut(s) 9, 451, 978
BbvI GCAGC 2 cut(s) 190, 883
BccI CCATC 2 cut(s) 28, 326
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 2 cut(s) 213, 343
BcoDI GTCTC 3 cut(s) 386, 439, 632
BglII AGATCT 1 cut(s) 388
BisI GCNGC 2 cut(s) 204, 897
BlsI GCNGC 2 cut(s) 205, 898
Bme1390I CCNGG 3 cut(s) 118, 213, 343
Bme18I GGWCC 1 cut(s) 798
BmgT120I GGNCC 4 cut(s) 425, 426, 798, 882
BmiI GGNNCC 5 cut(s) 33, 217, 427, 603, 799
BmrFI CCNGG 3 cut(s) 118, 213, 343
BmsI GCATC 1 cut(s) 748
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 690
BpuMI CCSGG 2 cut(s) 213, 343
Bsa29I ATCGAT 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 625
BsaJI CCNNGG 5 cut(s) 342, 560, 597, 922, 937
BsaWI WCCGGW 1 cut(s) 861
Bsc4I CCNNNNNNNGG 4 cut(s) 218, 562, 668, 726
Bse118I RCCGGY 2 cut(s) 218, 555
Bse1I ACTGG 1 cut(s) 655
Bse21I CCTNAGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 850
BseBI CCWGG 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 5 cut(s) 342, 560, 597, 922, 937
BseGI GGATG 2 cut(s) 258, 306
BseLI CCNNNNNNNGG 4 cut(s) 218, 562, 668, 726
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 4 cut(s) 59, 399, 444, 991
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 2 cut(s) 190, 883
BshFI GGCC 8 cut(s) 227, 427, 534, 559, 730, 819, 883, 927
BshNI GGYRCC 2 cut(s) 31, 215
BshVI ATCGAT 1 cut(s) 183
BsiHKAI GWGCWC 3 cut(s) 9, 451, 978
BsiSI CCGG 5 cut(s) 213, 219, 342, 556, 862
BslFI GGGAC 1 cut(s) 811
BslI CCNNNNNNNGG 4 cut(s) 218, 562, 668, 726
BsmAI GTCTC 3 cut(s) 386, 439, 632
BsmBI CGTCTC 2 cut(s) 386, 632
BsmFI GGGAC 1 cut(s) 811
BsnI GGCC 8 cut(s) 227, 427, 534, 559, 730, 819, 883, 927
Bsp120I GGGCCC 1 cut(s) 425
Bsp1286I GDGCHC 4 cut(s) 9, 429, 451, 978
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 5 cut(s) 145, 180, 388, 847, 942
BspACI CCGC 2 cut(s) 801, 959
BspANI GGCC 8 cut(s) 227, 427, 534, 559, 730, 819, 883, 927
BspCNI CTCAG 4 cut(s) 58, 400, 445, 990
BspDI ATCGAT 1 cut(s) 183
BspLI GGNNCC 5 cut(s) 33, 217, 427, 603, 799
BspPI GGATC 3 cut(s) 188, 842, 950
BspQI GCTCTTC 3 cut(s) 77, 103, 342
BspT107I GGYRCC 2 cut(s) 31, 215
BsrBI CCGCTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 850
BsrFI RCCGGY 2 cut(s) 218, 555
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 1 cut(s) 655
BssAI RCCGGY 2 cut(s) 218, 555
BssECI CCNNGG 5 cut(s) 342, 560, 597, 922, 937
BssMI GATC 5 cut(s) 145, 180, 388, 847, 942
BssNI GRCGYC 1 cut(s) 625
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 380, 500
Bst6I CTCTTC 3 cut(s) 77, 103, 342
BstACI GRCGYC 1 cut(s) 625
BstAPI GCANNNNNTGC 1 cut(s) 896
BstAUI TGTACA 1 cut(s) 495
BstC8I GCNNGC 2 cut(s) 275, 881
BstDEI CTNAG 5 cut(s) 45, 385, 408, 453, 977
BstF5I GGATG 2 cut(s) 258, 306
BstKTI GATC 5 cut(s) 148, 183, 391, 850, 945
BstMAI GTCTC 3 cut(s) 386, 439, 632
BstMBI GATC 5 cut(s) 145, 180, 388, 847, 942
BstMWI GCNNNNNNNGC 6 cut(s) 680, 736, 896, 905, 933, 965
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 3 cut(s) 116, 211, 341
BstSLI GKGCMC 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 190, 883
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 408
BsuRI GGCC 8 cut(s) 227, 427, 534, 559, 730, 819, 883, 927
BsuTUI ATCGAT 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 504
BtsCI GGATG 2 cut(s) 258, 306
Cac8I GCNNGC 2 cut(s) 275, 881
CaiI CAGNNNCTG 2 cut(s) 280, 984
Cfr10I RCCGGY 2 cut(s) 218, 555
Cfr13I GGNCC 4 cut(s) 425, 426, 798, 882
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 3 cut(s) 216, 496, 658
CviAII CATG 4 cut(s) 223, 572, 736, 830
CviQI GTAC 3 cut(s) 216, 496, 658
DdeI CTNAG 5 cut(s) 45, 385, 408, 453, 977
DpnI GATC 5 cut(s) 147, 182, 390, 849, 944
DpnII GATC 5 cut(s) 145, 180, 388, 847, 942
EaeI YGGCCR 3 cut(s) 225, 557, 817
Eam1104I CTCTTC 3 cut(s) 77, 103, 342
EarI CTCTTC 3 cut(s) 77, 103, 342
Ecl136II GAGCTC 2 cut(s) 7, 449
Eco130I CCWWGG 1 cut(s) 560
Eco24I GRGCYC 3 cut(s) 9, 429, 451
Eco47I GGWCC 1 cut(s) 798
Eco53kI GAGCTC 2 cut(s) 7, 449
Eco57I CTGAAG 2 cut(s) 375, 752
Eco81I CCTNAGG 1 cut(s) 408
EcoICRI GAGCTC 2 cut(s) 7, 449
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 741
EcoT38I GRGCYC 3 cut(s) 9, 429, 451
ErhI CCWWGG 1 cut(s) 560
Esp3I CGTCTC 2 cut(s) 386, 632
FaeI CATG 4 cut(s) 226, 575, 739, 833
FaqI GGGAC 1 cut(s) 811
FatI CATG 4 cut(s) 222, 571, 735, 829
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 204, 897
FokI GGATG 2 cut(s) 245, 313
FriOI GRGCYC 3 cut(s) 9, 429, 451
Fsp4HI GCNGC 2 cut(s) 204, 897
GluI GCNGC 2 cut(s) 204, 897
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 8 cut(s) 227, 427, 534, 559, 730, 819, 883, 927
HapII CCGG 5 cut(s) 213, 219, 342, 556, 862
Hin1I GRCGYC 1 cut(s) 625
Hin1II CATG 4 cut(s) 226, 575, 739, 833
HincII GTYRAC 1 cut(s) 989
HindII GTYRAC 1 cut(s) 989
HinfI GANTC 4 cut(s) 366, 812, 870, 962
HpaII CCGG 5 cut(s) 213, 219, 342, 556, 862
HphI GGTGA 4 cut(s) 68, 791, 851, 911
Hpy166II GTNNAC 3 cut(s) 198, 496, 989
Hpy188I TCNGA 3 cut(s) 48, 913, 980
Hpy188III TCNNGA 5 cut(s) 131, 392, 407, 452, 669
Hpy8I GTNNAC 3 cut(s) 198, 496, 989
HpyAV CCTTC 3 cut(s) 82, 350, 776
HpyCH4III ACNGT 2 cut(s) 380, 500
HpyCH4IV ACGT 1 cut(s) 625
HpyCH4V TGCA 7 cut(s) 67, 233, 265, 283, 695, 739, 843
HpyF10VI GCNNNNNNNGC 6 cut(s) 680, 736, 896, 905, 933, 965
HpyF3I CTNAG 5 cut(s) 45, 385, 408, 453, 977
HpySE526I ACGT 1 cut(s) 625
Hsp92I GRCGYC 1 cut(s) 625
Hsp92II CATG 4 cut(s) 226, 575, 739, 833
KpnI GGTACC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 5 cut(s) 145, 180, 388, 847, 942
LguI GCTCTTC 3 cut(s) 77, 103, 342
LmnI GCTCC 4 cut(s) 4, 454, 671, 864
Lsp1109I GCAGC 2 cut(s) 190, 883
LweI GCATC 1 cut(s) 748
MaeII ACGT 1 cut(s) 625
MaeIII GTNAC 2 cut(s) 287, 779
MalI GATC 5 cut(s) 147, 182, 390, 849, 944
MbiI CCGCTC 1 cut(s) 803
MboI GATC 5 cut(s) 145, 180, 388, 847, 942
MboII GAAGA 5 cut(s) 94, 120, 266, 359, 818
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 4 cut(s) 9, 429, 451, 978
MlsI TGGCCA 1 cut(s) 819
MluCI AATT 3 cut(s) 543, 616, 835
MluNI TGGCCA 1 cut(s) 819
Mox20I TGGCCA 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 741
MroXI GAANNNNTTC 1 cut(s) 86
MscI TGGCCA 1 cut(s) 819
MseI TTAA 3 cut(s) 171, 246, 1006
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 819
MspA1I CMGCKG 2 cut(s) 203, 896
MspI CCGG 5 cut(s) 213, 219, 342, 556, 862
MspR9I CCNGG 3 cut(s) 118, 213, 343
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 6 cut(s) 680, 736, 896, 905, 933, 965
NciI CCSGG 2 cut(s) 213, 343
NdeII GATC 5 cut(s) 145, 180, 388, 847, 942
NlaIII CATG 4 cut(s) 226, 575, 739, 833
NlaIV GGNNCC 5 cut(s) 33, 217, 427, 603, 799
NmeAIII GCCGAG 2 cut(s) 903, 962
NmuCI GTSAC 2 cut(s) 287, 779
NsiI ATGCAT 1 cut(s) 741
NspI RCATGY 1 cut(s) 739
PciSI GCTCTTC 3 cut(s) 77, 103, 342
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 4 cut(s) 366, 812, 870, 962
PkrI GCNGC 2 cut(s) 205, 898
Psp124BI GAGCTC 2 cut(s) 9, 451
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 5 cut(s) 33, 217, 427, 603, 799
PspOMI GGGCCC 1 cut(s) 425
PspPI GGNCC 4 cut(s) 425, 426, 798, 882
PstNI CAGNNNCTG 2 cut(s) 280, 984
PsuI RGATCY 1 cut(s) 388
PvuII CAGCTG 2 cut(s) 203, 896
RsaI GTAC 3 cut(s) 217, 497, 659
RsaNI GTAC 3 cut(s) 216, 496, 658
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 2 cut(s) 9, 451
SapI GCTCTTC 3 cut(s) 77, 103, 342
SaqAI TTAA 3 cut(s) 171, 246, 1006
SatI GCNGC 2 cut(s) 204, 897
Sau3AI GATC 5 cut(s) 145, 180, 388, 847, 942
Sau96I GGNCC 4 cut(s) 425, 426, 798, 882
ScrFI CCNGG 3 cut(s) 118, 213, 343
SduI GDGCHC 4 cut(s) 9, 429, 451, 978
SfaNI GCATC 1 cut(s) 748
SinI GGWCC 1 cut(s) 798
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 3 cut(s) 543, 616, 835
SsiI CCGC 2 cut(s) 801, 959
SspI AATATT 1 cut(s) 756
SstI GAGCTC 2 cut(s) 9, 451
StyD4I CCNGG 3 cut(s) 116, 211, 341
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 2 cut(s) 380, 500
TaiI ACGT 1 cut(s) 628
TaqI TCGA 3 cut(s) 183, 460, 519
TasI AATT 3 cut(s) 543, 616, 835
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 4 cut(s) 366, 812, 870, 962
Tru1I TTAA 3 cut(s) 171, 246, 1006
Tru9I TTAA 3 cut(s) 171, 246, 1006
TseFI GTSAC 2 cut(s) 287, 779
TseI GCWGC 2 cut(s) 203, 896
Tsp45I GTSAC 2 cut(s) 287, 779
TspDTI ATGAA 6 cut(s) 114, 317, 414, 456, 662, 818
TspGWI ACGGA 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 798
XapI RAATTY 2 cut(s) 616, 835
XceI RCATGY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 86
ZraI GACGTC 1 cut(s) 626
Zsp2I ATGCAT 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.