Rmu_sc0004288.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004288.1
OG0021617
Physical Location & Seq
Reverse (-)
32148 .. 32546
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004288.1_g000009.1.cds

Sequence Viewer

Length: 399 bp
atggtttttattaatttgtatctcaatgtcagtagggtatctcccatttcaggtgttgtgcttgacgctgctttgctcatgcagttggaaagtcttcataaagctcaggaatccttcttcaccagctttctcaatgatgcctttgttcctcaatgtaagctgcaggaactgagcttggagaccatgttcagtgagaaccatctggagtatgaatctgaggtatctgggaatggttctaaagaatacagggatgcactggcaaaaaatggttctggcaatgagatggtccaacttgctactgaagagctgcgcaccaaaagggaaagcttggacaaattgaataatctcaagtctgcaggagaggatcaatttcatggccggatgtggtggacgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.99

Weight (kDa)

4.91

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021617)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004288.1_g000009 Rmu_sc0006406.1_g000009 Rmu_ssc0000160.1_g000007
rosa_roxburghii Rroxscaffold_4G00290580
rosa_samantha Rh1CG312300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 311
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 340
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 6 cut(s) 104, 126, 160, 174, 307, 327
AluI AGCT 6 cut(s) 104, 126, 160, 174, 307, 327
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 372
AlwNI CAGNNNCTG 1 cut(s) 169
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 3 cut(s) 68, 160, 307
AseI ATTAAT 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 3 cut(s) 55, 147, 294
BccI CCATC 2 cut(s) 207, 277
BcoDI GTCTC 1 cut(s) 173
BfmI CTRYAG 2 cut(s) 161, 354
BisI GCNGC 3 cut(s) 69, 161, 308
BlsI GCNGC 3 cut(s) 70, 162, 309
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 286
BmsI GCATC 2 cut(s) 127, 241
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 283
BseGI GGATG 2 cut(s) 256, 387
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 3 cut(s) 119, 161, 207
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 55, 147, 294
BshFI GGCC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 378
Bso31I GGTCTC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 364
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 3 cut(s) 118, 162, 208
BspMAI CTGCAG 2 cut(s) 165, 358
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 261
BssMI GATC 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 105, 170, 216
BstF5I GGATG 2 cut(s) 256, 387
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 161, 354
BstV1I GCAGC 3 cut(s) 55, 147, 294
BstV2I GAAGAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 2 cut(s) 256, 387
BtsIMutI CAGTG 2 cut(s) 196, 254
CaiI CAGNNNCTG 1 cut(s) 169
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 286
CseI GACGC 1 cut(s) 74
CviAII CATG 3 cut(s) 79, 184, 374
CviJI RGCY 7 cut(s) 104, 126, 160, 174, 307, 327, 378
CviKI_1 RGCY 7 cut(s) 104, 126, 160, 174, 307, 327, 378
DdeI CTNAG 3 cut(s) 105, 170, 216
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 321
FaeI CATG 3 cut(s) 82, 187, 377
FaiI YATR 5 cut(s) 80, 99, 185, 210, 375
FatI CATG 3 cut(s) 78, 183, 373
Fnu4HI GCNGC 3 cut(s) 69, 161, 308
FokI GGATG 2 cut(s) 263, 394
Fsp4HI GCNGC 3 cut(s) 69, 161, 308
FspI TGCGCA 1 cut(s) 311
GlaI GCGC 1 cut(s) 311
GluI GCNGC 3 cut(s) 69, 161, 308
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 378
HapII CCGG 1 cut(s) 379
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 312
Hin1II CATG 3 cut(s) 82, 187, 377
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 2 cut(s) 110, 212
HpaII CCGG 1 cut(s) 379
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 107, 203
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 82, 163, 254, 356
HpyF3I CTNAG 3 cut(s) 105, 170, 216
Hsp92II CATG 3 cut(s) 82, 187, 377
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 364
LguI GCTCTTC 1 cut(s) 297
Lsp1109I GCAGC 3 cut(s) 55, 147, 294
LweI GCATC 2 cut(s) 127, 241
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 3 cut(s) 86, 109, 314
MluCI AATT 4 cut(s) 13, 335, 368, 394
MmeI TCCRAC 2 cut(s) 66, 313
MnlI CCTC 3 cut(s) 159, 211, 355
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 12
MspI CCGG 1 cut(s) 379
NdeII GATC 1 cut(s) 364
NlaIII CATG 3 cut(s) 82, 187, 377
NsbI TGCGCA 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 110, 212
PkrI GCNGC 3 cut(s) 70, 162, 309
PshBI ATTAAT 1 cut(s) 12
PspPI GGNCC 1 cut(s) 286
PstI CTGCAG 2 cut(s) 165, 358
PstNI CAGNNNCTG 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 69, 161, 308
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 1 cut(s) 286
SetI ASST 8 cut(s) 55, 106, 128, 162, 176, 222, 309, 329
SfaNI GCATC 2 cut(s) 127, 241
SfcI CTRYAG 2 cut(s) 161, 354
SinI GGWCC 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 4 cut(s) 13, 335, 368, 394
TasI AATT 4 cut(s) 13, 335, 368, 394
TfiI GAWTC 2 cut(s) 110, 212
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 196, 261
TseI GCWGC 3 cut(s) 68, 160, 307
TspDTI ATGAA 3 cut(s) 86, 225, 362
TspRI CASTG 2 cut(s) 196, 261
VpaK11BI GGWCC 1 cut(s) 286
VspI ATTAAT 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.