Rmu_sc0006406.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006406.1
OG0021617
Physical Location & Seq
Forward (+)
44024 .. 50372
6349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006406.1_g000009.1.cds

Sequence Viewer

Length: 1074 bp
atggcgaaagagctcttcgatttgctgaacaagcaactgattgcaaatgagaggtggaagaacaattttgaaaacctatatctatacccttgcttgtgtgacatgaatcgatggcgattcaaaaacatcgagggtgggcaggctgcaggcgagatcgagggtgggcgctggtgggcaggctgcaggcttgttgggtggactgcgcaggtgcgggacccgaggctactgatgcggggcagtagtgcggagggcgactgggtgaggctgggcagcgctcgacctggtgtgttggtctggccggctgtggggcttctcggcaggggtactaaagttggggcggggtccgaacttcaggagctgagcttggagaccatgttcagtgagaaacggctggagtatgaatctgaggtatctgggaatggttctaaagaatacagggatgcactggcaaaaaatggttctggcaatgagatggtccaacttgctactgaagagctgtgcaccaaaagggaaagcttggacaaattgaataattacaagtctgcaggagaggatcaatttcatggcctgatgtggcagccgaaatccggtcatcggcagctggattccggccaacttttgctggattccggccaactttcgcaggatttcgatcacccgattccggtcaccggcagccagaatcaggttgaagatgctagtaatgaaaccgaggttgaagatgctggtaatgaaactgaagatactagtctagtgaaagaggaggataggaaaactaagaagaagaagaagaaggtctacttgaaggatgacgcggtccgattgcagaaataccgccgaaagtttagaaacttcgggcctccgattctctctacaaccaattcatgtacgattcgaggaagaaaagcagaggcggaagaaaagcagatcgagattttcggggaacaggctgagagagagagagagagaggcgttttggggaaggaatgccgaaaatttcgccagcgagatcccagccactcgactctaagcccagccacgactcctgctctcttgtctgcaagtagtggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

40.21

Weight (kDa)

6.94

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021617)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004288.1_g000009 Rmu_sc0006406.1_g000009 Rmu_ssc0000160.1_g000007
rosa_roxburghii Rroxscaffold_4G00290580
rosa_samantha Rh1CG312300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc16I TGCGCA 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 798
AccII CGCG 1 cut(s) 815
AciI CCGC 7 cut(s) 211, 232, 245, 338, 815, 835, 914
AclWI GGATC 2 cut(s) 561, 1004
AcoI YGGCCR 3 cut(s) 296, 610, 631
AcsI RAATTY 1 cut(s) 995
AcuI CTGAAG 3 cut(s) 335, 510, 759
AfaI GTAC 2 cut(s) 325, 889
AfeI AGCGCT 1 cut(s) 274
AfiI CCNNNNNNNGG 6 cut(s) 305, 587, 594, 664, 671, 685
AgsI TTSAA 6 cut(s) 71, 121, 529, 692, 719, 805
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 280
AloI GAACNNNNNNTCC 2 cut(s) 359, 391
AluBI AGCT 6 cut(s) 13, 358, 363, 496, 516, 601
AluI AGCT 6 cut(s) 13, 358, 363, 496, 516, 601
Alw21I GWGCWC 2 cut(s) 15, 503
Alw26I GTCTC 1 cut(s) 362
Alw44I GTGCAC 1 cut(s) 499
AlwI GGATC 2 cut(s) 561, 1004
AlwNI CAGNNNCTG 1 cut(s) 358
Ama87I CYCGRG 1 cut(s) 217
Aor51HI AGCGCT 1 cut(s) 274
AoxI GGCC 5 cut(s) 296, 565, 610, 631, 857
ApaLI GTGCAC 1 cut(s) 499
ApeKI GCWGC 6 cut(s) 143, 180, 270, 577, 598, 675
ApoI RAATTY 1 cut(s) 995
AspLEI GCGC 3 cut(s) 168, 205, 275
AspS9I GGNCC 5 cut(s) 214, 342, 475, 817, 857
AsuHPI GGTGA 3 cut(s) 271, 647, 661
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 4 cut(s) 214, 342, 475, 817
BaeGI GKGCMC 1 cut(s) 503
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanII GRGCYC 1 cut(s) 15
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
Bbv12I GWGCWC 2 cut(s) 15, 503
BbvI GCAGC 6 cut(s) 130, 167, 282, 589, 610, 687
BccI CCATC 2 cut(s) 105, 466
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 362
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 3 cut(s) 699, 747, 752
BfmI CTRYAG 3 cut(s) 144, 181, 543
BfoI RGCGCY 2 cut(s) 169, 276
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 6 cut(s) 144, 181, 271, 578, 599, 676
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 6 cut(s) 145, 182, 272, 579, 600, 677
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 4 cut(s) 214, 342, 475, 817
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 214, 342, 475, 817, 857
BmiI GGNNCC 3 cut(s) 215, 216, 343
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 4 cut(s) 219, 430, 685, 712
BmuI ACTGGG 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 413
Bpu1102I GCTNAGC 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 218, 711
BsaWI WCCGGW 2 cut(s) 587, 664
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 6 cut(s) 305, 587, 594, 664, 671, 685
Bse118I RCCGGY 2 cut(s) 298, 671
Bse1I ACTGG 2 cut(s) 260, 450
Bse3DI GCAATG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 218, 711
BseGI GGATG 2 cut(s) 445, 814
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 6 cut(s) 305, 587, 594, 664, 671, 685
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 3 cut(s) 350, 396, 942
BseNI ACTGG 2 cut(s) 260, 450
BseRI GAGGAG 1 cut(s) 776
BseSI GKGCMC 1 cut(s) 503
BseXI GCAGC 6 cut(s) 130, 167, 282, 589, 610, 687
BseYI CCCAGC 3 cut(s) 265, 1013, 1033
Bsh1236I CGCG 1 cut(s) 815
BshFI GGCC 5 cut(s) 298, 567, 612, 633, 859
BshVI ATCGAT 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 15, 503
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 6 cut(s) 299, 588, 609, 630, 665, 672
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 6 cut(s) 305, 587, 594, 664, 671, 685
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 992
BsnI GGCC 5 cut(s) 298, 567, 612, 633, 859
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 15, 503
Bsp143I GATC 5 cut(s) 153, 553, 652, 927, 1009
Bsp1720I GCTNAGC 1 cut(s) 359
BspACI CCGC 7 cut(s) 211, 232, 245, 338, 815, 835, 914
BspANI GGCC 5 cut(s) 298, 567, 612, 633, 859
BspCNI CTCAG 3 cut(s) 351, 397, 943
BspDI ATCGAT 1 cut(s) 109
BspFNI CGCG 1 cut(s) 815
BspLI GGNNCC 3 cut(s) 215, 216, 343
BspMAI CTGCAG 3 cut(s) 148, 185, 547
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 2 cut(s) 561, 1004
BspQI GCTCTTC 2 cut(s) 20, 486
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 472
BsrFI RCCGGY 2 cut(s) 298, 671
BsrI ACTGG 2 cut(s) 260, 450
BssAI RCCGGY 2 cut(s) 298, 671
BssECI CCNNGG 2 cut(s) 218, 711
BssMI GATC 5 cut(s) 153, 553, 652, 927, 1009
Bst2UI CCWGG 1 cut(s) 282
Bst6I CTCTTC 2 cut(s) 20, 486
BstC8I GCNNGC 6 cut(s) 141, 148, 178, 185, 300, 1004
BstDEI CTNAG 5 cut(s) 359, 405, 777, 951, 1028
BstEII GGTNACC 1 cut(s) 667
BstF5I GGATG 2 cut(s) 445, 814
BstFNI CGCG 1 cut(s) 815
BstH2I RGCGCY 2 cut(s) 169, 276
BstHHI GCGC 3 cut(s) 168, 205, 275
BstKTI GATC 5 cut(s) 156, 556, 655, 930, 1012
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 5 cut(s) 153, 553, 652, 927, 1009
BstMWI GCNNNNNNNGC 2 cut(s) 31, 229
BstNI CCWGG 1 cut(s) 282
BstPI GGTNACC 1 cut(s) 667
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 3 cut(s) 144, 181, 543
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 1 cut(s) 815
BstV1I GCAGC 6 cut(s) 130, 167, 282, 589, 610, 687
BstX2I RGATCY 1 cut(s) 1009
BstYI RGATCY 1 cut(s) 1009
Bsu15I ATCGAT 1 cut(s) 109
BsuRI GGCC 5 cut(s) 298, 567, 612, 633, 859
BsuTUI ATCGAT 1 cut(s) 109
BtsCI GGATG 2 cut(s) 445, 814
BtsIMutI CAGTG 2 cut(s) 385, 443
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 6 cut(s) 141, 148, 178, 185, 300, 1004
CaiI CAGNNNCTG 1 cut(s) 358
CfoI GCGC 3 cut(s) 168, 205, 275
Cfr10I RCCGGY 2 cut(s) 298, 671
Cfr13I GGNCC 5 cut(s) 214, 342, 475, 817, 857
ClaI ATCGAT 1 cut(s) 109
CpoI CGGWCCG 1 cut(s) 817
CseI GACGC 1 cut(s) 821
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 2 cut(s) 324, 888
CspI CGGWCCG 1 cut(s) 817
CviAII CATG 4 cut(s) 103, 373, 563, 885
CviQI GTAC 2 cut(s) 324, 888
DdeI CTNAG 5 cut(s) 359, 405, 777, 951, 1028
DpnI GATC 5 cut(s) 155, 555, 654, 929, 1011
DpnII GATC 5 cut(s) 153, 553, 652, 927, 1009
EaeI YGGCCR 3 cut(s) 296, 610, 631
Eam1104I CTCTTC 2 cut(s) 20, 486
EarI CTCTTC 2 cut(s) 20, 486
EciI GGCGGA 1 cut(s) 929
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 4 cut(s) 214, 342, 475, 817
Eco47III AGCGCT 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 3 cut(s) 335, 510, 759
Eco88I CYCGRG 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 4 cut(s) 106, 376, 566, 888
FaiI YATR 7 cut(s) 79, 85, 104, 374, 399, 564, 886
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 102, 372, 562, 884
FauI CCCGC 3 cut(s) 204, 225, 331
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 6 cut(s) 144, 181, 271, 578, 599, 676
FokI GGATG 2 cut(s) 452, 821
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 6 cut(s) 144, 181, 271, 578, 599, 676
FspBI CTAG 3 cut(s) 699, 747, 752
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 3 cut(s) 167, 204, 274
GluI GCNGC 6 cut(s) 144, 181, 271, 578, 599, 676
GsaI CCCAGC 3 cut(s) 269, 1017, 1037
GsuI CTGGAG 1 cut(s) 413
HaeII RGCGCY 2 cut(s) 169, 276
HaeIII GGCC 5 cut(s) 298, 567, 612, 633, 859
HapII CCGG 6 cut(s) 299, 588, 609, 630, 665, 672
HgaI GACGC 1 cut(s) 821
HhaI GCGC 3 cut(s) 168, 205, 275
Hin1II CATG 4 cut(s) 106, 376, 566, 888
Hin6I GCGC 3 cut(s) 166, 203, 273
HinP1I GCGC 3 cut(s) 166, 203, 273
HindIII AAGCTT 1 cut(s) 514
HpaII CCGG 6 cut(s) 299, 588, 609, 630, 665, 672
HphI GGTGA 3 cut(s) 271, 647, 661
Hpy166II GTNNAC 3 cut(s) 198, 501, 799
Hpy188I TCNGA 4 cut(s) 346, 406, 821, 864
Hpy188III TCNNGA 2 cut(s) 353, 931
Hpy8I GTNNAC 3 cut(s) 198, 501, 799
HpyAV CCTTC 3 cut(s) 787, 799, 976
HpyCH4V TGCA 8 cut(s) 44, 146, 183, 443, 501, 545, 826, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 229
HpyF3I CTNAG 5 cut(s) 359, 405, 777, 951, 1028
Hsp92II CATG 4 cut(s) 106, 376, 566, 888
HspAI GCGC 3 cut(s) 166, 203, 273
KflI GGGWCCC 1 cut(s) 214
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Kzo9I GATC 5 cut(s) 153, 553, 652, 927, 1009
LguI GCTCTTC 2 cut(s) 20, 486
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 6 cut(s) 130, 167, 282, 589, 610, 687
LweI GCATC 4 cut(s) 219, 430, 685, 712
MabI ACCWGGT 1 cut(s) 280
MaeI CTAG 3 cut(s) 699, 747, 752
MaeIII GTNAC 2 cut(s) 98, 667
MalI GATC 5 cut(s) 155, 555, 654, 929, 1011
MboI GATC 5 cut(s) 153, 553, 652, 927, 1009
MflI RGATCY 1 cut(s) 1009
MhlI GDGCHC 2 cut(s) 15, 503
MluCI AATT 6 cut(s) 64, 524, 532, 557, 880, 995
MlyI GAGTC 2 cut(s) 1018, 1036
MmeI TCCRAC 1 cut(s) 502
MroNI GCCGGC 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 6 cut(s) 299, 588, 609, 630, 665, 672
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 992
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 815
MwoI GCNNNNNNNGC 2 cut(s) 31, 229
NaeI GCCGGC 1 cut(s) 300
NdeII GATC 5 cut(s) 153, 553, 652, 927, 1009
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 4 cut(s) 106, 376, 566, 888
NlaIV GGNNCC 3 cut(s) 215, 216, 343
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 98, 667
NsbI TGCGCA 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 196
PciSI GCTCTTC 2 cut(s) 20, 486
PctI GAATGC 1 cut(s) 992
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 9 cut(s) 106, 117, 401, 605, 626, 661, 682, 865, 892
PflFI GACNNNGTC 1 cut(s) 815
PkrI GCNGC 6 cut(s) 145, 182, 272, 579, 600, 677
PleI GAGTC 2 cut(s) 1018, 1036
PpsI GAGTC 2 cut(s) 1018, 1036
PpuMI RGGWCCY 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 667
PspFI CCCAGC 3 cut(s) 265, 1013, 1033
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 215, 216, 343
PspPI GGNCC 5 cut(s) 214, 342, 475, 817, 857
PspPPI RGGWCCY 1 cut(s) 214
PstI CTGCAG 3 cut(s) 148, 185, 547
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 1009
PsyI GACNNNGTC 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 601
RsaI GTAC 2 cut(s) 325, 889
RsaNI GTAC 2 cut(s) 324, 888
Rsr2I CGGWCCG 1 cut(s) 817
RsrII CGGWCCG 1 cut(s) 817
SacI GAGCTC 1 cut(s) 15
SapI GCTCTTC 2 cut(s) 20, 486
SatI GCNGC 6 cut(s) 144, 181, 271, 578, 599, 676
Sau3AI GATC 5 cut(s) 153, 553, 652, 927, 1009
Sau96I GGNCC 5 cut(s) 214, 342, 475, 817, 857
SchI GAGTC 2 cut(s) 1018, 1036
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 2 cut(s) 15, 503
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 4 cut(s) 219, 430, 685, 712
SfcI CTRYAG 3 cut(s) 144, 181, 543
SinI GGWCC 4 cut(s) 214, 342, 475, 817
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 6 cut(s) 64, 524, 532, 557, 880, 995
SsiI CCGC 7 cut(s) 211, 232, 245, 338, 815, 835, 914
SspMI CTAG 3 cut(s) 699, 747, 752
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 280
TaqI TCGA 9 cut(s) 18, 109, 129, 156, 277, 651, 895, 930, 1022
TasI AATT 6 cut(s) 64, 524, 532, 557, 880, 995
TfiI GAWTC 9 cut(s) 106, 117, 401, 605, 626, 661, 682, 865, 892
TscAI CASTG 2 cut(s) 385, 450
TseFI GTSAC 2 cut(s) 98, 667
TseI GCWGC 6 cut(s) 143, 180, 270, 577, 598, 675
Tsp45I GTSAC 2 cut(s) 98, 667
TspDTI ATGAA 6 cut(s) 119, 414, 551, 720, 747, 873
TspRI CASTG 2 cut(s) 385, 450
Tth111I GACNNNGTC 1 cut(s) 815
VneI GTGCAC 1 cut(s) 499
VpaK11BI GGWCC 4 cut(s) 214, 342, 475, 817
XapI RAATTY 1 cut(s) 995
XmiI GTMKAC 1 cut(s) 798
XspI CTAG 3 cut(s) 699, 747, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.