Rh1CG312300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0021617
Physical Location & Seq
Forward (+)
58612385 .. 58614991
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG312300.1

Sequence Viewer

Length: 339 bp
ATGTCAGTAGGGTATCTCCCATTTCAGGTGTTGTGCTTGACGCTGCTTTGCTCATCCAGTTGGAGAGTCTTCATAAAGCTCAGGAATCCTTCTTCACCAGCTTTCTCAATGATGCCTTTGTTCCTCAATTTAAGCTGCAGGAACTTGTTGGAAAATCTGAGCTTGGAGACCATGTTCGGTGAGAACCGGCTGGAGAATGAATATGAGGTATCTGGGATTGGTTCTAAAGAATACAGGGATGCACTGGCAAAAAATGGTTCTGGCAATGAGATGGTCCAACTTGCTACTGAAGAGTTGCGCACCTTGGACAAATTGAATAATCTCAAGTCTGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.67

Weight (kDa)

5.0

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021617)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004288.1_g000009 Rmu_sc0006406.1_g000009 Rmu_ssc0000160.1_g000007
rosa_roxburghii Rroxscaffold_4G00290580
rosa_samantha Rh1CG312300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 316
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 4 cut(s) 79, 101, 135, 162
AluI AGCT 4 cut(s) 79, 101, 135, 162
Alw26I GTCTC 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 43, 135
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 87, 191
AvaII GGWCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 30, 122
BccI CCATC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 2 cut(s) 44, 136
BlsI GCNGC 2 cut(s) 45, 137
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmsI GCATC 2 cut(s) 102, 229
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 2 cut(s) 57, 249
Bse3DI GCAATG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 53, 244
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 94, 149
BseNI ACTGG 2 cut(s) 57, 249
BseXI GCAGC 2 cut(s) 30, 122
BsiSI CCGG 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 93, 150
BspMAI CTGCAG 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 2 cut(s) 57, 249
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 80, 158
BstF5I GGATG 2 cut(s) 53, 244
BstHHI GCGC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 30, 122
BstV2I GAAGAC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 53, 244
BtsIMutI CAGTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 300
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 274
CseI GACGC 1 cut(s) 49
CviAII CATG 1 cut(s) 172
CviJI RGCY 5 cut(s) 79, 101, 135, 162, 190
CviKI_1 RGCY 5 cut(s) 79, 101, 135, 162, 190
DdeI CTNAG 2 cut(s) 80, 158
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 74, 173, 204
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 44, 136
FokI GGATG 2 cut(s) 40, 251
Fsp4HI GCNGC 2 cut(s) 44, 136
FspI TGCGCA 1 cut(s) 299
GlaI GCGC 1 cut(s) 299
GluI GCNGC 2 cut(s) 44, 136
GsuI CTGGAG 1 cut(s) 212
HapII CCGG 1 cut(s) 187
HgaI GACGC 1 cut(s) 49
HhaI GCGC 1 cut(s) 300
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 2 cut(s) 66, 85
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 87, 191
Hpy188I TCNGA 2 cut(s) 159, 331
Hpy188III TCNNGA 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 138, 242
HpyF3I CTNAG 2 cut(s) 80, 158
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 298
Lsp1109I GCAGC 2 cut(s) 30, 122
LweI GCATC 2 cut(s) 102, 229
MboII GAAGA 3 cut(s) 61, 84, 302
MluCI AATT 2 cut(s) 127, 311
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 3 cut(s) 41, 129, 301
MnlI CCTC 2 cut(s) 134, 199
MseI TTAA 1 cut(s) 131
MspI CCGG 1 cut(s) 187
NlaIII CATG 1 cut(s) 175
NsbI TGCGCA 1 cut(s) 299
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 45, 137
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 2 cut(s) 44, 136
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 75
SetI ASST 7 cut(s) 30, 81, 103, 137, 164, 210, 305
SfaNI GCATC 2 cut(s) 102, 229
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 2 cut(s) 127, 311
StyI CCWWGG 1 cut(s) 303
TasI AATT 2 cut(s) 127, 311
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 249
TseI GCWGC 2 cut(s) 43, 135
TspDTI ATGAA 2 cut(s) 61, 213
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.