Rroxscaffold_4G00290580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0021617
Physical Location & Seq
Reverse (-)
11097845 .. 11099894
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290580.1

Sequence Viewer

Length: 519 bp
ATGCTTAGTGATGCTTTTGGTCCAGGCCACAAGCAAGACTTGATCTCGGAGACTATGTTCGGCCTGAACAGGCTGAAGTACGATGATCTAGCATCTCAAATTACTTCTGAACTCTACAGGGATGCACTTACCAAGGTTGATGGTTCTGGTGATTATCTCACCCAACTCACTGCTGAAACCTTGTACAAGAAAAAGGAAAAGTCGGTAAAGAGATTGCAAGCCATCAAGTTTGAAGGAGGGATGAGTTTTATGAATGTGGTGGCCAGATTTAAGGAATGCATGAATATCATATATGAACTTCAGGCTCTGGCTGTTGAGCTTGGTATTAAGCTCGGGAACATTCTGCGTGCTTTACTTTTCATGATGTCTAGGTCTGATGGGATAGTGAAACAGAAGCTTATTATGGCATTTCGTTTATTCTTGACTAAAATTGAGGACGCGGAGGAGGGTGTTCTGTTGAAAGGCATCAAAGCTGTTTTGGACAAAGGTGACAAAGTAGTTCAGGGAAGGGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.32

Weight (kDa)

8.87

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021617)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004288.1_g000009 Rmu_sc0006406.1_g000009 Rmu_ssc0000160.1_g000007
rosa_roxburghii Rroxscaffold_4G00290580
rosa_samantha Rh1CG312300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 440
AciI CCGC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 2 cut(s) 95, 284
AfaI GTAC 2 cut(s) 80, 185
AgsI TTSAA 2 cut(s) 233, 460
AjnI CCWGG 1 cut(s) 22
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 319, 331, 397, 473
AluI AGCT 4 cut(s) 319, 331, 397, 473
Alw26I GTCTC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 3 cut(s) 25, 61, 261
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 3 cut(s) 151, 161, 500
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 20
BalI TGGCCA 1 cut(s) 263
BccI CCATC 3 cut(s) 134, 230, 371
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 2 cut(s) 89, 369
BfmI CTRYAG 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 3 cut(s) 101, 112, 474
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 127, 246
BseRI GAGGAG 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 440
BshFI GGCC 3 cut(s) 27, 63, 263
BsiHKCI CYCGRG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 3 cut(s) 27, 63, 263
BsoBI CYCGRG 1 cut(s) 332
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 2 cut(s) 42, 85
BspACI CCGC 1 cut(s) 440
BspANI GGCC 3 cut(s) 27, 63, 263
BspFNI CGCG 1 cut(s) 440
BspHI TCATGA 1 cut(s) 360
BsrGI TGTACA 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 42, 85
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 219, 348
BstDEI CTNAG 1 cut(s) 5
BstF5I GGATG 2 cut(s) 127, 246
BstFNI CGCG 1 cut(s) 440
BstKTI GATC 2 cut(s) 45, 88
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 42, 85
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 1 cut(s) 440
BsuRI GGCC 3 cut(s) 27, 63, 263
BtsCI GGATG 2 cut(s) 127, 246
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 219, 348
CaiI CAGNNNCTG 1 cut(s) 307
CciI TCATGA 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 20
CseI GACGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 79, 184
CviAII CATG 2 cut(s) 280, 361
CviQI GTAC 2 cut(s) 79, 184
DdeI CTNAG 1 cut(s) 5
DpnI GATC 2 cut(s) 44, 87
DpnII GATC 2 cut(s) 42, 85
EaeI YGGCCR 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 95, 284
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 283, 364
FaiI YATR 9 cut(s) 56, 251, 281, 290, 292, 294, 362, 404, 517
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 2 cut(s) 279, 360
FokI GGATG 2 cut(s) 134, 253
FspBI CTAG 2 cut(s) 89, 369
HaeIII GGCC 3 cut(s) 27, 63, 263
HgaI GACGC 1 cut(s) 446
Hin1II CATG 2 cut(s) 283, 364
HindIII AAGCTT 1 cut(s) 395
HphI GGTGA 3 cut(s) 151, 161, 500
Hpy188I TCNGA 3 cut(s) 49, 109, 376
Hpy188III TCNNGA 3 cut(s) 334, 361, 421
HpyAV CCTTC 2 cut(s) 227, 501
HpyCH4V TGCA 3 cut(s) 125, 217, 279
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 2 cut(s) 283, 364
Kzo9I GATC 2 cut(s) 42, 85
LweI GCATC 3 cut(s) 101, 112, 474
MaeI CTAG 2 cut(s) 89, 369
MaeIII GTNAC 1 cut(s) 488
MalI GATC 2 cut(s) 44, 87
MboI GATC 2 cut(s) 42, 85
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 2 cut(s) 99, 429
MluNI TGGCCA 1 cut(s) 263
MnlI CCTC 5 cut(s) 230, 427, 436, 439, 505
Mox20I TGGCCA 1 cut(s) 263
Mph1103I ATGCAT 1 cut(s) 281
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 270, 327
Msp20I TGGCCA 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 440
NdeII GATC 2 cut(s) 42, 85
NlaIII CATG 2 cut(s) 283, 364
NmuCI GTSAC 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 281
PagI TCATGA 1 cut(s) 360
PctI GAATGC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspPI GGNCC 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 307
RsaI GTAC 2 cut(s) 80, 185
RsaNI GTAC 2 cut(s) 79, 184
SaqAI TTAA 2 cut(s) 270, 327
Sau3AI GATC 2 cut(s) 42, 85
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 24
SetI ASST 9 cut(s) 138, 182, 321, 333, 374, 399, 475, 490, 516
SfaNI GCATC 3 cut(s) 101, 112, 474
SfcI CTRYAG 1 cut(s) 115
SinI GGWCC 1 cut(s) 20
Sse9I AATT 2 cut(s) 99, 429
SsiI CCGC 1 cut(s) 440
SspMI CTAG 2 cut(s) 89, 369
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 132
TasI AATT 2 cut(s) 99, 429
TatI WGTACW 1 cut(s) 183
Tru1I TTAA 2 cut(s) 270, 327
Tru9I TTAA 2 cut(s) 270, 327
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 4 cut(s) 266, 296, 309, 349
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 20
XspI CTAG 2 cut(s) 89, 369
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.