Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004300.1

Orthogroup ID

OG0014664

Physical Location & Seq

Genomic Coordinates Reverse (-)

14171 .. 14956

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggagtcatactctctcttccaattctcaaacccttctcaattctcacctgaatcctccttcggttcgtcgctagattctttctcgtgggacgacgctttactcgatactttcaacaacgatatgttgaactttccaccatttaacacaaatcatgagcctcaagatttgttgctgttcgatgctgtggctaaagaaccagcattagtggctgaagaaacgcactggtttggtggagctgtaaaggaagaggaggtcacttccaattccaatgccttccaagtgtttgaagggaaacccagaaaggaaaagtcgtacagaggggtcaggaggaggccttggggcaaatacgcagctgaaataagggactcgacgaggcatggagtcagggtttggcttggcactttcgatagtgccgaggcagctgctttggcctatgaccaagctgcattttcactgaggggtcctttggctgtgctcaattttccggttgaagttgtgagggagtcacttcaagagatcaagtgtagatatgacgaagggtgctcgccaattgtggcactcaagaggaggcactcgacgagaagaaagtctttgtgcaaaaagaatagttgtaataaagagcaaggaaaagtcaagagttcgattccttccaaagtaacaaagaataaaacgcaagagaacgtcgtaacgcaaaatgtggtggtattagaggatttgggtgctgaatacttggaggagcttttgtatcaaagctcatgtgaaagtgctagtttttcttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

261

Amino Acids

29.39

Weight (kDa)

5.72

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	105 - 155	9.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0014664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21550
malus_domestica	MD05G1198700.v1.1 MD10G1184800.v1.1
prunus_persica	Prupe.8G224600_v2.0.a1
pyrus_communis	pycom05g18500
rosa_chinensis	RchiOBHm_Chr6g0288231
rosa_laevigata	RLG00000012427
rosa_multiflora	Rmu_co8374589.1_g000001 Rmu_sc0004300.1_g000003 Rmu_sc0009830.1_g000005
rosa_roxburghii	Rroxscaffold_7G00180360
rosa_rugosa	Rorug06G0194800
rosa_samantha	Rh6AG305700 Rh6BG311500 Rh6CG319500 Rh6DG304700
rosa_wichuraiana	Rw6G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	317
AgsI	TTSAA	5 cut(s)	115, 130, 290, 494, 515
AluBI	AGCT	6 cut(s)	239, 356, 425, 446, 742, 756
AluI	AGCT	6 cut(s)	239, 356, 425, 446, 742, 756
Alw21I	GWGCWC	2 cut(s)	480, 548
AoxI	GGCC	2 cut(s)	335, 432
ApeKI	GCWGC	4 cut(s)	353, 422, 425, 446
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	464
BauI	CACGAG	1 cut(s)	85
Bbv12I	GWGCWC	2 cut(s)	480, 548
BbvI	GCAGC	4 cut(s)	365, 412, 433, 434
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BfaI	CTAG	2 cut(s)	74, 771
BisI	GCNGC	4 cut(s)	354, 423, 426, 447
BlsI	GCNGC	4 cut(s)	355, 424, 427, 448
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	1 cut(s)	172
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	147, 548
BsaJI	CCNNGG	2 cut(s)	338, 417
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	4 cut(s)	375, 405, 731, 761
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	338, 417
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	4 cut(s)	266, 346, 583, 752
BseXI	GCAGC	4 cut(s)	365, 412, 433, 434
BshFI	GGCC	2 cut(s)	337, 434
BsiHKAI	GWGCWC	2 cut(s)	480, 548
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	104, 380
BsmFI	GGGAC	2 cut(s)	104, 380
BsnI	GGCC	2 cut(s)	337, 434
Bsp1286I	GDGCHC	2 cut(s)	480, 548
Bsp143I	GATC	1 cut(s)	519
BspANI	GGCC	2 cut(s)	337, 434
BspCNI	CTCAG	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	338, 417
BssMI	GATC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	23, 243
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	458
BstKTI	GATC	1 cut(s)	522
BstMBI	GATC	1 cut(s)	519
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 422, 431
BstV1I	GCAGC	4 cut(s)	365, 412, 433, 434
BsuRI	GGCC	2 cut(s)	337, 434
BtsIMutI	CAGTG	2 cut(s)	223, 455
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	155, 380, 759
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	23, 243
EarI	CTCTTC	2 cut(s)	23, 243
Eco130I	CCWWGG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	3 cut(s)	158, 383, 762
FaiI	YATR	7 cut(s)	10, 125, 156, 381, 438, 534, 760
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	2 cut(s)	104, 380
FatI	CATG	3 cut(s)	154, 379, 758
Fnu4HI	GCNGC	4 cut(s)	354, 423, 426, 447
Fsp4HI	GCNGC	4 cut(s)	354, 423, 426, 447
FspBI	CTAG	2 cut(s)	74, 771
GluI	GCNGC	4 cut(s)	354, 423, 426, 447
HaeIII	GGCC	2 cut(s)	337, 434
HapII	CCGG	1 cut(s)	488
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	158, 383, 762
HinfI	GANTC	7 cut(s)	5, 53, 77, 368, 384, 506, 646
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	1 cut(s)	39
Hpy188III	TCNNGA	6 cut(s)	155, 164, 328, 515, 565, 637
Hpy99I	CGWCG	5 cut(s)	73, 98, 376, 583, 689
HpyAV	CCTTC	6 cut(s)	45, 70, 284, 286, 533, 660
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	2 cut(s)	449, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 422, 431
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	3 cut(s)	158, 383, 762
Kzo9I	GATC	1 cut(s)	519
LmnI	GCTCC	2 cut(s)	236, 739
LpnPI	CCDG	7 cut(s)	63, 211, 213, 313, 313, 373, 501
Lsp1109I	GCAGC	4 cut(s)	365, 412, 433, 434
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	74, 771
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	4 cut(s)	256, 507, 658, 688
MalI	GATC	1 cut(s)	521
MboI	GATC	1 cut(s)	519
MboII	GAAGA	4 cut(s)	10, 227, 260, 597
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	2 cut(s)	480, 548
MluCI	AATT	5 cut(s)	23, 41, 265, 481, 552
MlyI	GAGTC	4 cut(s)	14, 362, 393, 515
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	2 cut(s)	356, 425
MspI	CCGG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	552
MwoI	GCNNNNNNNGC	3 cut(s)	209, 422, 431
NdeII	GATC	1 cut(s)	519
NlaIII	CATG	3 cut(s)	158, 383, 762
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	256, 507
PagI	TCATGA	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 414
PfeI	GAWTC	3 cut(s)	53, 77, 646
PkrI	GCNGC	4 cut(s)	355, 424, 427, 448
PleI	GAGTC	4 cut(s)	13, 362, 392, 514
PpsI	GAGTC	4 cut(s)	13, 362, 392, 514
PpuMI	RGGWCCY	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	464
PspPPI	RGGWCCY	1 cut(s)	464
PvuII	CAGCTG	2 cut(s)	356, 425
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	4 cut(s)	354, 423, 426, 447
Sau3AI	GATC	1 cut(s)	519
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	4 cut(s)	14, 362, 393, 515
SduI	GDGCHC	2 cut(s)	480, 548
SetI	ASST	9 cut(s)	52, 241, 258, 358, 427, 448, 687, 744, 758
SfaNI	GCATC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	162, 563
SmoI	CTYRAG	2 cut(s)	162, 563
Sse9I	AATT	5 cut(s)	23, 41, 265, 481, 552
SseBI	AGGCCT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	74, 771
StuI	AGGCCT	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	338
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	6 cut(s)	105, 180, 371, 408, 578, 644
TasI	AATT	5 cut(s)	23, 41, 265, 481, 552
TfiI	GAWTC	3 cut(s)	53, 77, 646
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	230, 462
TseFI	GTSAC	2 cut(s)	256, 507
TseI	GCWGC	4 cut(s)	353, 422, 425, 446
Tsp45I	GTSAC	2 cut(s)	256, 507
TspRI	CASTG	2 cut(s)	230, 462
VpaK11BI	GGWCC	1 cut(s)	464
XspI	CTAG	2 cut(s)	74, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.