Rmu_sc0004535.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004535.1
OG0015827
Physical Location & Seq
Forward (+)
48501 .. 49374
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004535.1_g000010.1.cds

Sequence Viewer

Length: 747 bp
atgattatgaagctaacatattcttccttttcacatactagtgtggctgctgatacctgtgttgcaatggatgaatgggttcaaaacccaactgctcatacagcattagatgaaatactgccctgtgtggacagtgcaacagcccaagaaaccatgttgcgaagcaaggaagtcactgctcaactagtcaatttgatcaatgaggtcatcaccaatgtctcaaacataaattttgctgccaacttcgtgccaatgtacttcaatcaatctggtccattggtgccactcctctgcaacccattttctcccgacttgactgatcgggcttgcactgctggcgaagtgaacttaaacaatgcaacagaggtatggggaagctatgtctgccaggttacacctagtgggatttgcaccacaacagggcgtttgaccccgacattctacagccagatgattactggagtaagtctgagtaatggcttgtataactatgctcctgtactcgttcaactacaagactgcacgtttgtgagggaaacttttagtgacatatacagggatcattgtcctggcctaagaagatacagtagatggatctacattggcttggtgatggtctctacttcagttatgctctcactcgtcttctgggtgatatatgggagagaacgacgccaccgtgtttatactaaagagtcaatggccgaatcagctcaaggtactgaaggggaaaaggacatttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.64

Weight (kDa)

5.07

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25270
fragaria_vesca FvH4_2g28370
malus_domestica MD15G1129700.v1.1
prunus_persica Prupe.1G485200_v2.0.a1
pyrus_communis pycom15g11690
rosa_chinensis RchiOBHm_Chr6g0297331
rosa_laevigata RLG00000011610
rosa_multiflora Rmu_sc0004535.1_g000010
rosa_roxburghii Rroxscaffold_7G00170640
rosa_rugosa Rorug06G0270800
rosa_samantha Rh6AG382200 Rh6BG390200 Rh6CG395400 Rh6DG382200
rosa_wichuraiana Rw6G033290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AclWI GGATC 2 cut(s) 567, 602
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 609, 744
AcyI GRCGYC 1 cut(s) 673
AdeI CACNNNGTG 1 cut(s) 401
AfaI GTAC 3 cut(s) 257, 501, 721
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 3 cut(s) 83, 262, 509
AhlI ACTAGT 2 cut(s) 38, 184
AjnI CCWGG 2 cut(s) 387, 568
AleI CACNNNNGTG 1 cut(s) 527
AluBI AGCT 3 cut(s) 13, 378, 713
AluI AGCT 3 cut(s) 13, 378, 713
Alw26I GTCTC 2 cut(s) 223, 622
AlwI GGATC 2 cut(s) 567, 602
AoxI GGCC 2 cut(s) 571, 702
ApeKI GCWGC 2 cut(s) 47, 236
ApoI RAATTY 1 cut(s) 229
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
Asp700I GAANNNNTTC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 202, 622, 664
AvaII GGWCC 1 cut(s) 272
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BanI GGYRCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 637
BbvI GCAGC 2 cut(s) 34, 223
BccI CCATC 2 cut(s) 585, 607
BciT130I CCWGG 2 cut(s) 389, 570
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 2 cut(s) 223, 622
BcuI ACTAGT 2 cut(s) 38, 184
BfaI CTAG 3 cut(s) 39, 185, 399
BfmI CTRYAG 1 cut(s) 442
BisI GCNGC 2 cut(s) 48, 237
BlsI GCNGC 2 cut(s) 49, 238
Bme1390I CCNGG 2 cut(s) 389, 570
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 2 cut(s) 389, 570
BpiI GAAGAC 1 cut(s) 637
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 673
BsaI GGTCTC 1 cut(s) 622
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 2 cut(s) 389, 570
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 34, 223
BsgI GTGCAG 1 cut(s) 505
BshFI GGCC 2 cut(s) 573, 704
BshNI GGYRCC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 2 cut(s) 223, 622
BsnI GGCC 2 cut(s) 573, 704
Bso31I GGTCTC 1 cut(s) 622
Bsp143I GATC 4 cut(s) 195, 319, 559, 594
BspANI GGCC 2 cut(s) 573, 704
BspCNI CTCAG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 2 cut(s) 567, 602
BspT107I GGYRCC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 1 cut(s) 463
BssMI GATC 4 cut(s) 195, 319, 559, 594
BssNI GRCGYC 1 cut(s) 673
Bst2UI CCWGG 2 cut(s) 389, 570
Bst4CI ACNGT 3 cut(s) 134, 587, 680
BstACI GRCGYC 1 cut(s) 673
BstC8I GCNNGC 2 cut(s) 328, 337
BstDEI CTNAG 2 cut(s) 470, 575
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 4 cut(s) 198, 322, 562, 597
BstMAI GTCTC 2 cut(s) 223, 622
BstMBI GATC 4 cut(s) 195, 319, 559, 594
BstMWI GCNNNNNNNGC 5 cut(s) 101, 332, 336, 384, 710
BstNI CCWGG 2 cut(s) 389, 570
BstSCI CCNGG 2 cut(s) 387, 568
BstSFI CTRYAG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 34, 223
BstV2I GAAGAC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
BsuRI GGCC 2 cut(s) 573, 704
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 2 cut(s) 174, 330
BtsIMutI CAGTG 3 cut(s) 139, 174, 330
Cac8I GCNNGC 2 cut(s) 328, 337
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 681
Csp6I GTAC 3 cut(s) 256, 500, 720
CviAII CATG 1 cut(s) 154
CviQI GTAC 3 cut(s) 256, 500, 720
DdeI CTNAG 2 cut(s) 470, 575
DpnI GATC 4 cut(s) 197, 321, 561, 596
DpnII GATC 4 cut(s) 195, 319, 559, 594
DraIII CACNNNGTG 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 609, 744
EcoRII CCWGG 2 cut(s) 387, 568
FaeI CATG 1 cut(s) 157
FatI CATG 1 cut(s) 153
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 48, 237
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 48, 237
FspBI CTAG 3 cut(s) 39, 185, 399
GluI GCNGC 2 cut(s) 48, 237
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 2 cut(s) 573, 704
HgaI GACGC 1 cut(s) 681
Hin1I GRCGYC 1 cut(s) 673
Hin1II CATG 1 cut(s) 157
HinfI GANTC 2 cut(s) 695, 707
HphI GGTGA 3 cut(s) 202, 622, 664
Hpy166II GTNNAC 2 cut(s) 130, 346
Hpy188I TCNGA 1 cut(s) 471
Hpy188III TCNNGA 2 cut(s) 308, 744
Hpy8I GTNNAC 2 cut(s) 130, 346
Hpy99I CGWCG 1 cut(s) 675
HpyAV CCTTC 1 cut(s) 719
HpyCH4III ACNGT 3 cut(s) 134, 587, 680
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 7 cut(s) 65, 137, 294, 330, 359, 411, 522
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 332, 336, 384, 710
HpyF3I CTNAG 2 cut(s) 470, 575
HpySE526I ACGT 1 cut(s) 524
Hsp92I GRCGYC 1 cut(s) 673
Hsp92II CATG 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 4 cut(s) 195, 319, 559, 594
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 2 cut(s) 34, 223
MaeI CTAG 3 cut(s) 39, 185, 399
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 3 cut(s) 172, 391, 545
MalI GATC 4 cut(s) 197, 321, 561, 596
MboI GATC 4 cut(s) 195, 319, 559, 594
MboII GAAGA 3 cut(s) 15, 591, 637
MflI RGATCY 1 cut(s) 594
MluCI AATT 2 cut(s) 190, 229
MlyI GAGTC 1 cut(s) 704
MnlI CCTC 4 cut(s) 196, 299, 358, 525
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 2 cut(s) 39, 527
MspR9I CCNGG 2 cut(s) 389, 570
MvaI CCWGG 2 cut(s) 389, 570
MwoI GCNNNNNNNGC 5 cut(s) 101, 332, 336, 384, 710
NdeII GATC 4 cut(s) 195, 319, 559, 594
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 172, 545
OliI CACNNNNGTG 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 707
PkrI GCNGC 2 cut(s) 49, 238
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
Psp6I CCWGG 2 cut(s) 387, 568
PspGI CCWGG 2 cut(s) 387, 568
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 594
RsaI GTAC 3 cut(s) 257, 501, 721
RsaNI GTAC 3 cut(s) 256, 500, 720
RseI CAYNNNNRTG 2 cut(s) 39, 527
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 48, 237
Sau3AI GATC 4 cut(s) 195, 319, 559, 594
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 2 cut(s) 389, 570
SfcI CTRYAG 1 cut(s) 442
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 39, 527
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SpeI ACTAGT 2 cut(s) 38, 184
Sse9I AATT 2 cut(s) 190, 229
SspMI CTAG 3 cut(s) 39, 185, 399
StyD4I CCNGG 2 cut(s) 387, 568
TaaI ACNGT 3 cut(s) 134, 587, 680
TaiI ACGT 1 cut(s) 527
TasI AATT 2 cut(s) 190, 229
TatI WGTACW 2 cut(s) 255, 499
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 3 cut(s) 139, 181, 337
TseFI GTSAC 2 cut(s) 172, 545
TseI GCWGC 2 cut(s) 47, 236
Tsp45I GTSAC 2 cut(s) 172, 545
TspDTI ATGAA 3 cut(s) 23, 87, 126
TspRI CASTG 3 cut(s) 139, 181, 337
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 3 cut(s) 39, 185, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.