Rroxscaffold_7G00170640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015827
Physical Location & Seq
Reverse (-)
11049669 .. 11053540
3872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170640.1

Sequence Viewer

Length: 1233 bp
ATGATGTTATACTACACATCTCTACCCTCCTATCTACTTCTGGCCACTTTTCTCTTTCTCTTCTTCTCGCACGGGGATTCTCACTTTTCAACCCTCCAACTCCAAACACCACCCCCCTCTACTTCACCAGGATGGGATTTTGAAGTGGGATTTTCAGGGAAGTCTCTTGTGGAGGGACCCTTTAGTGCTCCGATTGAGACCTCGTCGGTTGTGTTAGCTGCCCAGCGAACACGCCGGAAAGATCCTCTTGATGGGTTCAAGAGGTACACTGGAGGTTGGAATATCAGTGAGCACCATTACTGGGCTTTCCCCTGTTTGCCATTGCTGCAATCTGGTTCCTGGGCTTTGGTTTGTGCTTGCTGCTCATCTGTATCTGTCACTTTTGCTGTCACAGACAGGCTTATGGCTACTCTCGAACAGCCTATGATTGGCTGTGTTGTGTTATACACTGGTCAAAAGAAGTTTCATGATAGCTCAACAAGTACATTGGAGAGACTGGCACTTATAATAATTGCTGCCATTATGCTTGTCTTGACATTTTTGGGATTCTTGTTTTCAATGTTTGGCATGCAATTGCTTGTGTACATACTAGTGATCACGGGATGGATACTTGTTGCTGGAACACTTATTCTGTGTGGCACATTCCTTCTTCTTCATAAAAACAGATACTTTGTCAATTTGATCAATGAGGTCATCACCAACGTCTCAAACATAAATTTTGCTGCCAACTTTGTGCCAATGTACTTCAATCAATCTGGTCCATTGGTGCCACTCCTCTGCAACCCATTTTCTCCCGACTTGACTGATCGAGCTTGCACTGCTGGCGAAGTGAACTTAAACAATGCAACAGAGGTATGGGGAAGCTATGTCTGCCAGGTTACACCTAGTGGGATTTGCACCACAACAGGGCGTTTGACCCCAACATTCTACAGCCAGATGATTACTGGAGTAAGTCTGAGTAATGGCTTGTATAATTATGCTCCTGTACTCGTTCAACTACAAGACTGCACATTTGTGAGGGAAACTTTTAGTGACATATACAGGGATCATTGTCCTGACCTAAGAAGATACAGTAGATGGATCTACATTGGCTTGGTGATGGTCTCTACTTCAGTTATGCTCTCACTCGTCTTCTGGGTGATATATGGGAGAGAACGACGCCACCGTGTTTATACCAAAGAGTCGATGGCTGAATCAGCTCAAGGTACTGAAGGGGAAAAGGACATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

45.85

Weight (kDa)

6.44

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25270
fragaria_vesca FvH4_2g28370
malus_domestica MD15G1129700.v1.1
prunus_persica Prupe.1G485200_v2.0.a1
pyrus_communis pycom15g11690
rosa_chinensis RchiOBHm_Chr6g0297331
rosa_laevigata RLG00000011610
rosa_multiflora Rmu_sc0004535.1_g000010
rosa_roxburghii Rroxscaffold_7G00170640
rosa_rugosa Rorug06G0270800
rosa_samantha Rh6AG382200 Rh6BG390200 Rh6CG395400 Rh6DG382200
rosa_wichuraiana Rw6G033290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
AccB1I GGYRCC 1 cut(s) 766
AclWI GGATC 3 cut(s) 236, 1053, 1088
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 715
AcuI CTGAAG 2 cut(s) 1095, 1230
AcyI GRCGYC 1 cut(s) 1159
AdeI CACNNNGTG 1 cut(s) 887
AfaI GTAC 6 cut(s) 266, 484, 584, 743, 987, 1207
AfiI CCNNNNNNNGG 4 cut(s) 251, 301, 428, 906
AgsI TTSAA 6 cut(s) 90, 143, 259, 558, 748, 995
AhlI ACTAGT 1 cut(s) 589
AjnI CCWGG 3 cut(s) 127, 338, 873
AleI CACNNNNGTG 1 cut(s) 1013
AluBI AGCT 5 cut(s) 218, 474, 812, 864, 1199
AluI AGCT 5 cut(s) 218, 474, 812, 864, 1199
Alw21I GWGCWC 2 cut(s) 190, 294
Alw26I GTCTC 5 cut(s) 168, 191, 487, 709, 1108
AlwI GGATC 3 cut(s) 236, 1053, 1088
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 5 cut(s) 218, 325, 360, 515, 722
ApoI RAATTY 1 cut(s) 715
ArsI GACNNNNNNTTYG 2 cut(s) 995, 1027
AspS9I GGNCC 2 cut(s) 176, 758
AsuHPI GGTGA 4 cut(s) 117, 688, 1108, 1150
AvaII GGWCC 2 cut(s) 176, 758
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 766
BbsI GAAGAC 1 cut(s) 1123
Bbv12I GWGCWC 2 cut(s) 190, 294
BbvI GCAGC 5 cut(s) 205, 312, 347, 502, 709
BccI CCATC 6 cut(s) 126, 245, 597, 1071, 1093, 1180
BciT130I CCWGG 3 cut(s) 129, 340, 875
BciVI GTATCC 1 cut(s) 600
BclI TGATCA 2 cut(s) 594, 681
BcoDI GTCTC 5 cut(s) 168, 191, 487, 709, 1108
BcuI ACTAGT 1 cut(s) 589
BfaI CTAG 2 cut(s) 590, 885
BfmI CTRYAG 1 cut(s) 928
BfuI GTATCC 1 cut(s) 600
BisI GCNGC 5 cut(s) 219, 326, 361, 516, 723
BlsI GCNGC 5 cut(s) 220, 327, 362, 517, 724
Bme1390I CCNGG 3 cut(s) 129, 340, 875
Bme18I GGWCC 2 cut(s) 176, 758
BmgT120I GGNCC 2 cut(s) 176, 758
BmiI GGNNCC 4 cut(s) 177, 178, 337, 768
BmrFI CCNGG 3 cut(s) 129, 340, 875
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 1123
BpmI CTGGAG 2 cut(s) 291, 966
BpuEI CTTGAG 1 cut(s) 1185
BsaHI GRCGYC 1 cut(s) 1159
BsaI GGTCTC 2 cut(s) 191, 1108
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 301, 428, 906
Bse1I ACTGG 5 cut(s) 274, 305, 454, 501, 949
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 3 cut(s) 129, 340, 875
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 137, 608
BseLI CCNNNNNNNGG 4 cut(s) 251, 301, 428, 906
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 947
BseNI ACTGG 5 cut(s) 274, 305, 454, 501, 949
BseRI GAGGAG 1 cut(s) 764
BseXI GCAGC 5 cut(s) 205, 312, 347, 502, 709
BseYI CCCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 991
BshFI GGCC 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 766
BsiHKAI GWGCWC 2 cut(s) 190, 294
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 4 cut(s) 251, 301, 428, 906
BsmAI GTCTC 5 cut(s) 168, 191, 487, 709, 1108
BsmBI CGTCTC 1 cut(s) 709
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 1 cut(s) 44
Bso31I GGTCTC 2 cut(s) 191, 1108
Bsp1286I GDGCHC 2 cut(s) 190, 294
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 6 cut(s) 241, 594, 681, 805, 1045, 1080
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 948
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 4 cut(s) 177, 178, 337, 768
BspPI GGATC 3 cut(s) 236, 1053, 1088
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 2 cut(s) 191, 1108
BsrDI GCAATG 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 5 cut(s) 274, 305, 454, 501, 949
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 6 cut(s) 241, 594, 681, 805, 1045, 1080
BssNI GRCGYC 1 cut(s) 1159
Bst2UI CCWGG 3 cut(s) 129, 340, 875
Bst4CI ACNGT 2 cut(s) 1073, 1166
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 1159
BstAUI TGTACA 1 cut(s) 582
BstC8I GCNNGC 4 cut(s) 358, 569, 814, 823
BstDEI CTNAG 2 cut(s) 956, 1061
BstF5I GGATG 2 cut(s) 137, 608
BstKTI GATC 6 cut(s) 244, 597, 684, 808, 1048, 1083
BstMAI GTCTC 5 cut(s) 168, 191, 487, 709, 1108
BstMBI GATC 6 cut(s) 241, 594, 681, 805, 1045, 1080
BstMWI GCNNNNNNNGC 5 cut(s) 325, 818, 822, 870, 1196
BstNI CCWGG 3 cut(s) 129, 340, 875
BstNSI RCATGY 1 cut(s) 571
BstSCI CCNGG 3 cut(s) 127, 338, 873
BstSFI CTRYAG 1 cut(s) 928
BstV1I GCAGC 5 cut(s) 205, 312, 347, 502, 709
BstV2I GAAGAC 1 cut(s) 1123
BstX2I RGATCY 2 cut(s) 241, 1080
BstYI RGATCY 2 cut(s) 241, 1080
BsuI GTATCC 1 cut(s) 600
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 137, 608
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 4 cut(s) 267, 292, 447, 816
Cac8I GCNNGC 4 cut(s) 358, 569, 814, 823
CciI TCATGA 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 176, 758
CseI GACGC 1 cut(s) 1167
Csp6I GTAC 6 cut(s) 265, 483, 583, 742, 986, 1206
CviAII CATG 2 cut(s) 467, 568
CviQI GTAC 6 cut(s) 265, 483, 583, 742, 986, 1206
DdeI CTNAG 2 cut(s) 956, 1061
DpnI GATC 6 cut(s) 243, 596, 683, 807, 1047, 1082
DpnII GATC 6 cut(s) 241, 594, 681, 805, 1045, 1080
DraIII CACNNNGTG 1 cut(s) 887
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco31I GGTCTC 2 cut(s) 191, 1108
Eco47I GGWCC 2 cut(s) 176, 758
Eco57I CTGAAG 2 cut(s) 1095, 1230
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 3 cut(s) 127, 338, 873
Esp3I CGTCTC 1 cut(s) 709
FaeI CATG 2 cut(s) 470, 571
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 466, 567
FbaI TGATCA 2 cut(s) 594, 681
Fnu4HI GCNGC 5 cut(s) 219, 326, 361, 516, 723
FokI GGATG 2 cut(s) 144, 615
Fsp4HI GCNGC 5 cut(s) 219, 326, 361, 516, 723
FspBI CTAG 2 cut(s) 590, 885
GluI GCNGC 5 cut(s) 219, 326, 361, 516, 723
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 2 cut(s) 291, 966
HaeIII GGCC 1 cut(s) 44
HapII CCGG 1 cut(s) 235
HgaI GACGC 1 cut(s) 1167
Hin1I GRCGYC 1 cut(s) 1159
Hin1II CATG 2 cut(s) 470, 571
HinfI GANTC 4 cut(s) 77, 546, 1181, 1193
HpaII CCGG 1 cut(s) 235
HphI GGTGA 4 cut(s) 117, 688, 1108, 1150
Hpy166II GTNNAC 3 cut(s) 267, 583, 832
Hpy188I TCNGA 2 cut(s) 192, 957
Hpy188III TCNNGA 8 cut(s) 248, 259, 413, 467, 532, 794, 1055, 1230
Hpy8I GTNNAC 3 cut(s) 267, 583, 832
Hpy99I CGWCG 2 cut(s) 208, 1161
HpyAV CCTTC 2 cut(s) 656, 1205
HpyCH4III ACNGT 2 cut(s) 1073, 1166
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 7 cut(s) 328, 571, 780, 816, 845, 897, 1008
HpyF10VI GCNNNNNNNGC 5 cut(s) 325, 818, 822, 870, 1196
HpyF3I CTNAG 2 cut(s) 956, 1061
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 1 cut(s) 1159
Hsp92II CATG 2 cut(s) 470, 571
KflI GGGWCCC 1 cut(s) 176
Ksp22I TGATCA 2 cut(s) 594, 681
Kzo9I GATC 6 cut(s) 241, 594, 681, 805, 1045, 1080
LmnI GCTCC 2 cut(s) 193, 985
Lsp1109I GCAGC 5 cut(s) 205, 312, 347, 502, 709
MaeI CTAG 2 cut(s) 590, 885
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 4 cut(s) 376, 388, 877, 1031
MalI GATC 6 cut(s) 243, 596, 683, 807, 1047, 1082
MboI GATC 6 cut(s) 241, 594, 681, 805, 1045, 1080
MboII GAAGA 6 cut(s) 52, 55, 641, 644, 1077, 1123
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 2 cut(s) 241, 1080
MhlI GDGCHC 2 cut(s) 190, 294
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 5 cut(s) 510, 572, 676, 715, 973
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 1190
MmeI TCCRAC 2 cut(s) 121, 257
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 1 cut(s) 836
MslI CAYNNNNRTG 3 cut(s) 130, 590, 1013
Msp20I TGGCCA 1 cut(s) 44
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 3 cut(s) 129, 340, 875
MunI CAATTG 1 cut(s) 572
MvaI CCWGG 3 cut(s) 129, 340, 875
MwoI GCNNNNNNNGC 5 cut(s) 325, 818, 822, 870, 1196
NdeII GATC 6 cut(s) 241, 594, 681, 805, 1045, 1080
NlaIII CATG 2 cut(s) 470, 571
NlaIV GGNNCC 4 cut(s) 177, 178, 337, 768
NmuCI GTSAC 3 cut(s) 376, 388, 1031
NspI RCATGY 1 cut(s) 571
OliI CACNNNNGTG 1 cut(s) 1013
PaeI GCATGC 1 cut(s) 571
PagI TCATGA 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 1162
PfeI GAWTC 3 cut(s) 77, 546, 1193
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 5 cut(s) 220, 327, 362, 517, 724
PleI GAGTC 1 cut(s) 1189
PpsI GAGTC 1 cut(s) 1189
PpuMI RGGWCCY 1 cut(s) 176
PsiI TTATAA 1 cut(s) 506
Psp5II RGGWCCY 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 127, 338, 873
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 3 cut(s) 127, 338, 873
PspN4I GGNNCC 4 cut(s) 177, 178, 337, 768
PspPI GGNCC 2 cut(s) 176, 758
PspPPI RGGWCCY 1 cut(s) 176
PsuI RGATCY 2 cut(s) 241, 1080
PsyI GACNNNGTC 1 cut(s) 202
RsaI GTAC 6 cut(s) 266, 484, 584, 743, 987, 1207
RsaNI GTAC 6 cut(s) 265, 483, 583, 742, 986, 1206
RseI CAYNNNNRTG 3 cut(s) 130, 590, 1013
SaqAI TTAA 1 cut(s) 836
SatI GCNGC 5 cut(s) 219, 326, 361, 516, 723
Sau3AI GATC 6 cut(s) 241, 594, 681, 805, 1045, 1080
Sau96I GGNCC 2 cut(s) 176, 758
SchI GAGTC 1 cut(s) 1190
ScrFI CCNGG 3 cut(s) 129, 340, 875
SduI GDGCHC 2 cut(s) 190, 294
SfcI CTRYAG 1 cut(s) 928
SinI GGWCC 2 cut(s) 176, 758
SmiMI CAYNNNNRTG 3 cut(s) 130, 590, 1013
SmlI CTYRAG 1 cut(s) 1200
SmoI CTYRAG 1 cut(s) 1200
SpeI ACTAGT 1 cut(s) 589
SphI GCATGC 1 cut(s) 571
Sse9I AATT 5 cut(s) 510, 572, 676, 715, 973
SspMI CTAG 2 cut(s) 590, 885
StyD4I CCNGG 3 cut(s) 127, 338, 873
TaaI ACNGT 2 cut(s) 1073, 1166
TaiI ACGT 1 cut(s) 705
TaqI TCGA 3 cut(s) 414, 808, 1184
TasI AATT 5 cut(s) 510, 572, 676, 715, 973
TatI WGTACW 4 cut(s) 482, 582, 741, 985
TfiI GAWTC 3 cut(s) 77, 546, 1193
Tru1I TTAA 1 cut(s) 836
Tru9I TTAA 1 cut(s) 836
TscAI CASTG 4 cut(s) 274, 292, 454, 823
TseFI GTSAC 3 cut(s) 376, 388, 1031
TseI GCWGC 5 cut(s) 218, 325, 360, 515, 722
Tsp45I GTSAC 3 cut(s) 376, 388, 1031
TspDTI ATGAA 2 cut(s) 455, 644
TspRI CASTG 4 cut(s) 274, 292, 454, 823
Tth111I GACNNNGTC 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 176, 758
XapI RAATTY 1 cut(s) 715
XceI RCATGY 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 2 cut(s) 941, 1183
XspI CTAG 2 cut(s) 590, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.