Rh6DG382200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015827
Physical Location & Seq
Forward (+)
57606580 .. 57610747
4168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG382200.1

Sequence Viewer

Length: 1296 bp
ATGATGTTATACTACACATCTCTACCCTCCTCTCTACTTCTGGCCACTTTTCTCTTTCTCTTCTTCTCGCACGGGGATTCTCACTTTTCAACCCTCCAACTCCAAACACCACCCCCCTCTACTTCACCAGGATGGGATTTTGAAGTGGGATTTTCAGGGAAGTCTCTTGTGGAGGGACCCTTTAGTGCTCCGATTGAGACCTCGTCGGTTGTGTTAGCTGCGCAGCGAACACGCCGGAAAGATCCTCTTGATGGGTTCAAGAGGTACACAGGAGGTTGGAATATCAGTGAGCGCCATTACTGGGCTTCTGTGGGTTTTACTGCAGTTCCCCTGTTTGCCATTGCTGCAATCTGGTTCCTGGGCTTTGGTTTGTGCTTGCTGCTCATCTGTATCTGTCACTTTTGCTGTCAAAGACAGGCTTATGGCTACTCTCGAACAGCCTATGTTCTTTCTCTTATATTCCTTGTACTATTCAGCATTACCGCAATGATTGGCTGTGTTGTGTTATACACTGGTCAAAAGAAGTTTCATGATAGCTCAACAAGTACATTGGAGTATGTCGTAAATCAGGCAGATATTACAGTTGGCCAATTAAGGAATGCATCAGATTATCTTGCTGCAGCTAAGCAGCTTGGAGTGGATCAAGTGTATTTACCTGCTAACATTCAAACTGATATAGATCAGATTGGTGGAAAGCTTAATTCCTCTGCTAACACCCTTGCTCAGCAAACAACAGAGAACTCAGATGACATTAGAGATCTCTTGGATTCTGTGAGACTGGCACTTATAATAATTGCTGCCATTATGCTTGTCTTGACATTTTTGGGATTCTTGTTTTCAATGTTCGGCATGCAATTGCTTGTGTACATACTAGTGATCACGGGATGGATACTTGTTGCTGGAACACTTATTCTGTGTGGCACATTCCTTCTTCTTCATAATGTGGCTGCTGATACCTGTGTTGCAATGGATGAATGGGTTCAAAACCCAACTGCTCATACAGCATTAGATGAAATACTGCCCTGTGTGGACAGTGCAACTGCCCAAGAAACCATGTTGCGAAGCAAGGAAGTCACTGCTCAACTAGTCAATTTGATCAATGAGGTCATCACCAACGTCTCAAACATAAATTTTGCTGCCAACTTTGTGCCAATGTACTTCAATCAATCTGGTCCATTGGTGCCACTCCTCTGCAACCCATTTTCTCCCGACTTGACTGATCGGACTTGCACTGCTGGCGAAGTGAACTTAAACAATGCAACAGAGGTAAAAGTAGCCGAAAACCTCCAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

47.28

Weight (kDa)

4.87

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25270
fragaria_vesca FvH4_2g28370
malus_domestica MD15G1129700.v1.1
prunus_persica Prupe.1G485200_v2.0.a1
pyrus_communis pycom15g11690
rosa_chinensis RchiOBHm_Chr6g0297331
rosa_laevigata RLG00000011610
rosa_multiflora Rmu_sc0004535.1_g000010
rosa_roxburghii Rroxscaffold_7G00170640
rosa_rugosa Rorug06G0270800
rosa_samantha Rh6AG382200 Rh6BG390200 Rh6CG395400 Rh6DG382200
rosa_wichuraiana Rw6G033290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
Acc16I TGCGCA 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 664
AccB1I GGYRCC 1 cut(s) 1180
AciI CCGC 1 cut(s) 483
AclWI GGATC 2 cut(s) 236, 648
AcoI YGGCCR 2 cut(s) 42, 586
AcsI RAATTY 1 cut(s) 1129
AfaI GTAC 5 cut(s) 266, 468, 547, 866, 1157
AfiI CCNNNNNNNGG 2 cut(s) 251, 301
AgsI TTSAA 7 cut(s) 90, 143, 259, 668, 840, 983, 1162
AhlI ACTAGT 2 cut(s) 871, 1084
AjnI CCWGG 2 cut(s) 127, 357
AluBI AGCT 5 cut(s) 218, 537, 623, 631, 697
AluI AGCT 5 cut(s) 218, 537, 623, 631, 697
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 4 cut(s) 168, 191, 769, 1123
AlwI GGATC 2 cut(s) 236, 648
AoxI GGCC 2 cut(s) 42, 586
ApoI RAATTY 1 cut(s) 1129
Asp700I GAANNNNTTC 1 cut(s) 978
AspLEI GCGC 2 cut(s) 223, 294
AspS9I GGNCC 2 cut(s) 176, 1172
AsuHPI GGTGA 2 cut(s) 117, 1102
AvaII GGWCC 2 cut(s) 176, 1172
BaeI ACNNNNGTAYC 2 cut(s) 945, 978
BalI TGGCCA 2 cut(s) 44, 588
BanI GGYRCC 1 cut(s) 1180
Bbv12I GWGCWC 1 cut(s) 190
BccI CCATC 3 cut(s) 126, 245, 879
BciT130I CCWGG 2 cut(s) 129, 359
BciVI GTATCC 1 cut(s) 882
BclI TGATCA 2 cut(s) 876, 1095
BcoDI GTCTC 4 cut(s) 168, 191, 769, 1123
BcuI ACTAGT 2 cut(s) 871, 1084
BfaI CTAG 2 cut(s) 872, 1085
BfmI CTRYAG 2 cut(s) 321, 618
BfoI RGCGCY 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 664
BfuI GTATCC 1 cut(s) 882
BglII AGATCT 1 cut(s) 757
BlpI GCTNAGC 2 cut(s) 624, 723
Bme1390I CCNGG 2 cut(s) 129, 359
Bme18I GGWCC 2 cut(s) 176, 1172
BmgT120I GGNCC 2 cut(s) 176, 1172
BmiI GGNNCC 4 cut(s) 177, 178, 356, 1182
BmrFI CCNGG 2 cut(s) 129, 359
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 611
BmuI ACTGGG 1 cut(s) 310
Bpu1102I GCTNAGC 2 cut(s) 624, 723
BsaBI GATNNNNATC 1 cut(s) 678
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 301
Bse1I ACTGG 3 cut(s) 305, 517, 783
Bse3DI GCAATG 3 cut(s) 339, 492, 972
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 2 cut(s) 129, 359
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 3 cut(s) 137, 890, 976
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 2 cut(s) 251, 301
BseMI GCAATG 3 cut(s) 339, 492, 972
BseMII CTCAG 2 cut(s) 737, 756
BseNI ACTGG 3 cut(s) 305, 517, 783
BseRI GAGGAG 2 cut(s) 19, 1178
BshFI GGCC 2 cut(s) 44, 588
BshNI GGYRCC 1 cut(s) 1180
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 251, 301
BsmAI GTCTC 4 cut(s) 168, 191, 769, 1123
BsmBI CGTCTC 1 cut(s) 1123
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 2 cut(s) 44, 588
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 190
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 7 cut(s) 241, 640, 679, 757, 876, 1095, 1219
Bsp1720I GCTNAGC 2 cut(s) 624, 723
BspACI CCGC 1 cut(s) 483
BspANI GGCC 2 cut(s) 44, 588
BspCNI CTCAG 2 cut(s) 736, 755
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 4 cut(s) 177, 178, 356, 1182
BspMAI CTGCAG 2 cut(s) 325, 622
BspMI ACCTGC 1 cut(s) 664
BspPI GGATC 2 cut(s) 236, 648
BspT107I GGYRCC 1 cut(s) 1180
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 3 cut(s) 339, 492, 972
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 3 cut(s) 305, 517, 783
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 7 cut(s) 241, 640, 679, 757, 876, 1095, 1219
Bst2UI CCWGG 2 cut(s) 129, 359
Bst4CI ACNGT 2 cut(s) 583, 1034
Bst6I CTCTTC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 864
BstC8I GCNNGC 3 cut(s) 377, 851, 1237
BstDEI CTNAG 3 cut(s) 624, 723, 742
BstF5I GGATG 3 cut(s) 137, 890, 976
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 2 cut(s) 223, 294
BstKTI GATC 7 cut(s) 244, 643, 682, 760, 879, 1098, 1222
BstMAI GTCTC 4 cut(s) 168, 191, 769, 1123
BstMBI GATC 7 cut(s) 241, 640, 679, 757, 876, 1095, 1219
BstMWI GCNNNNNNNGC 3 cut(s) 344, 1001, 1236
BstNI CCWGG 2 cut(s) 129, 359
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 2 cut(s) 127, 357
BstSFI CTRYAG 2 cut(s) 321, 618
BstX2I RGATCY 2 cut(s) 241, 757
BstYI RGATCY 2 cut(s) 241, 757
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 2 cut(s) 44, 588
BtsCI GGATG 3 cut(s) 137, 890, 976
BtsI GCAGTG 2 cut(s) 1074, 1230
BtsIMutI CAGTG 5 cut(s) 292, 510, 1039, 1074, 1230
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 3 cut(s) 377, 851, 1237
CciI TCATGA 1 cut(s) 529
CfoI GCGC 2 cut(s) 223, 294
Cfr13I GGNCC 2 cut(s) 176, 1172
Csp6I GTAC 5 cut(s) 265, 467, 546, 865, 1156
CviAII CATG 3 cut(s) 530, 850, 1054
CviQI GTAC 5 cut(s) 265, 467, 546, 865, 1156
DdeI CTNAG 3 cut(s) 624, 723, 742
DpnI GATC 7 cut(s) 243, 642, 681, 759, 878, 1097, 1221
DpnII GATC 7 cut(s) 241, 640, 679, 757, 876, 1095, 1219
EaeI YGGCCR 2 cut(s) 42, 586
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 176, 1172
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 127, 357
EcoT22I ATGCAT 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 1123
FaeI CATG 3 cut(s) 533, 853, 1057
FalI AAGNNNNNCTT 4 cut(s) 231, 263, 403, 435
FaqI GGGAC 1 cut(s) 189
FatI CATG 3 cut(s) 529, 849, 1053
FbaI TGATCA 2 cut(s) 876, 1095
FokI GGATG 3 cut(s) 144, 897, 983
FspBI CTAG 2 cut(s) 872, 1085
FspI TGCGCA 1 cut(s) 222
GlaI GCGC 2 cut(s) 222, 293
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 2 cut(s) 44, 588
HapII CCGG 1 cut(s) 235
HhaI GCGC 2 cut(s) 223, 294
Hin1II CATG 3 cut(s) 533, 853, 1057
Hin6I GCGC 2 cut(s) 221, 292
HinP1I GCGC 2 cut(s) 221, 292
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 3 cut(s) 77, 767, 828
HpaII CCGG 1 cut(s) 235
HphI GGTGA 2 cut(s) 117, 1102
Hpy166II GTNNAC 4 cut(s) 267, 865, 1030, 1246
Hpy188I TCNGA 5 cut(s) 192, 607, 684, 745, 1224
Hpy188III TCNNGA 6 cut(s) 248, 259, 432, 530, 814, 1208
Hpy8I GTNNAC 4 cut(s) 267, 865, 1030, 1246
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 938
HpyCH4III ACNGT 2 cut(s) 583, 1034
HpyCH4IV ACGT 1 cut(s) 1116
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 1001, 1236
HpyF3I CTNAG 3 cut(s) 624, 723, 742
HpySE526I ACGT 1 cut(s) 1116
Hsp92II CATG 3 cut(s) 533, 853, 1057
HspAI GCGC 2 cut(s) 221, 292
KflI GGGWCCC 1 cut(s) 176
Ksp22I TGATCA 2 cut(s) 876, 1095
Kzo9I GATC 7 cut(s) 241, 640, 679, 757, 876, 1095, 1219
LmnI GCTCC 1 cut(s) 193
LweI GCATC 1 cut(s) 611
MaeI CTAG 2 cut(s) 872, 1085
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 2 cut(s) 395, 1072
MalI GATC 7 cut(s) 243, 642, 681, 759, 878, 1097, 1221
MboI GATC 7 cut(s) 241, 640, 679, 757, 876, 1095, 1219
MboII GAAGA 4 cut(s) 52, 55, 923, 926
MfeI CAATTG 1 cut(s) 854
MflI RGATCY 2 cut(s) 241, 757
MhlI GDGCHC 1 cut(s) 190
MlsI TGGCCA 2 cut(s) 44, 588
MluCI AATT 7 cut(s) 590, 700, 792, 854, 1090, 1129, 1291
MluNI TGGCCA 2 cut(s) 44, 588
MmeI TCCRAC 2 cut(s) 121, 257
Mox20I TGGCCA 2 cut(s) 44, 588
Mph1103I ATGCAT 1 cut(s) 604
MroXI GAANNNNTTC 1 cut(s) 978
MscI TGGCCA 2 cut(s) 44, 588
MseI TTAA 3 cut(s) 593, 699, 1250
MslI CAYNNNNRTG 2 cut(s) 130, 872
Msp20I TGGCCA 2 cut(s) 44, 588
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 129, 359
MunI CAATTG 1 cut(s) 854
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 129, 359
MwoI GCNNNNNNNGC 3 cut(s) 344, 1001, 1236
NdeII GATC 7 cut(s) 241, 640, 679, 757, 876, 1095, 1219
NlaIII CATG 3 cut(s) 533, 853, 1057
NlaIV GGNNCC 4 cut(s) 177, 178, 356, 1182
NmuCI GTSAC 2 cut(s) 395, 1072
NsbI TGCGCA 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 1 cut(s) 853
PaeI GCATGC 1 cut(s) 853
PagI TCATGA 1 cut(s) 529
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 978
PfeI GAWTC 3 cut(s) 77, 767, 828
PflFI GACNNNGTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 176
PsiI TTATAA 1 cut(s) 788
Psp5II RGGWCCY 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 127, 357
PspGI CCWGG 2 cut(s) 127, 357
PspN4I GGNNCC 4 cut(s) 177, 178, 356, 1182
PspPI GGNCC 2 cut(s) 176, 1172
PspPPI RGGWCCY 1 cut(s) 176
PstI CTGCAG 2 cut(s) 325, 622
PsuI RGATCY 2 cut(s) 241, 757
PsyI GACNNNGTC 1 cut(s) 202
RsaI GTAC 5 cut(s) 266, 468, 547, 866, 1157
RsaNI GTAC 5 cut(s) 265, 467, 546, 865, 1156
RseI CAYNNNNRTG 2 cut(s) 130, 872
SaqAI TTAA 3 cut(s) 593, 699, 1250
Sau3AI GATC 7 cut(s) 241, 640, 679, 757, 876, 1095, 1219
Sau96I GGNCC 2 cut(s) 176, 1172
ScrFI CCNGG 2 cut(s) 129, 359
SduI GDGCHC 1 cut(s) 190
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 2 cut(s) 321, 618
SinI GGWCC 2 cut(s) 176, 1172
SmiMI CAYNNNNRTG 2 cut(s) 130, 872
SpeI ACTAGT 2 cut(s) 871, 1084
SphI GCATGC 1 cut(s) 853
Sse9I AATT 7 cut(s) 590, 700, 792, 854, 1090, 1129, 1291
SsiI CCGC 1 cut(s) 483
SspMI CTAG 2 cut(s) 872, 1085
StyD4I CCNGG 2 cut(s) 127, 357
TaaI ACNGT 2 cut(s) 583, 1034
TaiI ACGT 1 cut(s) 1119
TaqI TCGA 1 cut(s) 433
TasI AATT 7 cut(s) 590, 700, 792, 854, 1090, 1129, 1291
TatI WGTACW 4 cut(s) 466, 545, 864, 1155
TfiI GAWTC 3 cut(s) 77, 767, 828
Tru1I TTAA 3 cut(s) 593, 699, 1250
Tru9I TTAA 3 cut(s) 593, 699, 1250
TscAI CASTG 5 cut(s) 292, 517, 1039, 1081, 1237
TseFI GTSAC 2 cut(s) 395, 1072
Tsp45I GTSAC 2 cut(s) 395, 1072
TspDTI ATGAA 4 cut(s) 518, 926, 987, 1026
TspRI CASTG 5 cut(s) 292, 517, 1039, 1081, 1237
Tth111I GACNNNGTC 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 176, 1172
XapI RAATTY 1 cut(s) 1129
XceI RCATGY 1 cut(s) 853
XmnI GAANNNNTTC 1 cut(s) 978
XspI CTAG 2 cut(s) 872, 1085
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.