Rmu_sc0004716.1_g000005

Iron-Sulfur binding protein C terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004716.1
OG0014717
Physical Location & Seq
Reverse (-)
18892 .. 22509
3618 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1479 bp
atggcactgagcttcttctcctgttgtgcttcaattcctcctcaacaacatcaagcaaaactgaaccttggagtcaacaaagcccttgaagaggtaaggagcctcataaaaagtgttggggttccatcagttgcgtcctctccagtaaaatcacttcaaaatggcaactgggtcaagctcatatgcggcgcaagcttcgaggacgtggttgatataaggaatctctctctagtttactctcttgcaggagtggattgcatagactgtgcagcagatgtatcggtggtcagcgcggtaaatgaggggattgatgcagcattggagattttccctcttcgaaggccttgggtgatgatcagtgtaaatgatgatgaggatcttcactttcgaaaagctgaatttgatccagaggattgtccacttgactgttcaaggccttgtgagagtgtatgtcctgctgatgcaatatcttttgaaactggaagatcaataacacaattcggcaccaaaacatctgcctcattaaaggctggagttctaaccgaacgctgctatggctgtggccgctgcattccagtttgcccatacgataaaataagtgtgagcacatacataagagatgctactgcaaccactgaacttctgaaaagaaatgatgttgacgctatagagattcatacaagtggaaggcagattgctccatttaaaaaactttgggatggtttgggagattcaatcaaacatctcagactagcagcagttagtttacctgatcttggagaatcaaccgtatcaacaatgaaggctatgtactctattatggaaccagatttatgtagctttaatttatggcagttggatggccgccccatgagcggagatattggtcgaggtgccacaagagaatcaattgcttttgctcttcgtttggctgctataaaagaaaggcctcatggttttcttcaattagccggtggcaccaatgctcacacagttgatgggttgaggaaagtcggactttttcaagcgacatcctttacaaagaactcgaggaatgaaaactcaacagctatgattggtggtgttgcttatggtggctatgcacgaaagattgttggaagaatcctgagttctatgcaatcacaagacggcattactgggattgaggattatccagagcatctccttcaagcacttagagaggccctagctttagttggaaaactcaaatgttaccggaacattaacatatcatatctaaggaacactagcaaatggcatggtgtagatggttacttaactaggccatgtatggcatctataatcaaattcacgtttagggatggcaatggggcgggttggggatggggatcacaataccatccccatccccggggtcattatctacccccatccccgccccaatccccaataaaaatatattggggattccccgtccccatccccactggggactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fer4 Fer4_9 LdpA_C

Protein Analysis

492

Amino Acids

53.62

Weight (kDa)

7.49

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LdpA_Fe-S-bd PF25160 139 - 204 1.7e-21 LdpA Fe-S cluster-binding domain
Fer4_9 PF13187 142 - 197 5.3e-06 4Fe-4S dicluster domain
Fer4_7 PF12838 147 - 197 6e-06 4Fe-4S dicluster domain
LdpA_C PF12617 214 - 407 3.7e-62 Light dependent period A C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014717)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g19730 FvH4_4g19730 FvH4_4g19730 FvH4_4g19730 FvH4_4g19730
malus_domestica MD16G1154200.v1.1
prunus_persica Prupe.1G117500_v2.0.a1 Prupe.1G117500_v2.0.a1
pyrus_communis pycom16g13060
rosa_chinensis RchiOBHm_Chr4g0425231
rosa_laevigata RLG00000007384
rosa_multiflora Rmu_sc0004716.1_g000005
rosa_roxburghii Rroxscaffold_5G00367260
rosa_rugosa Rorug04G0202000
rosa_samantha Rh4BG264400 Rh4DG260500
rosa_wichuraiana Rw4G022410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 503, 893, 977
AccBSI CCGCTC 1 cut(s) 876
AccII CGCG 1 cut(s) 293
AciI CCGC 7 cut(s) 186, 293, 565, 865, 876, 1355, 1418
AclWI GGATC 3 cut(s) 384, 398, 1378
AcoI YGGCCR 2 cut(s) 562, 862
AcsI RAATTY 2 cut(s) 398, 1328
AfaI GTAC 1 cut(s) 812
AfiI CCNNNNNNNGG 6 cut(s) 91, 776, 875, 1392, 1393, 1471
AgsI TTSAA 9 cut(s) 33, 89, 158, 432, 476, 735, 965, 1025, 1190
AjiI CACGTC 1 cut(s) 205
AluBI AGCT 7 cut(s) 12, 178, 195, 395, 840, 1070, 1211
AluI AGCT 7 cut(s) 12, 178, 195, 395, 840, 1070, 1211
Alw21I GWGCWC 1 cut(s) 608
AlwI GGATC 3 cut(s) 384, 398, 1378
Ama87I CYCGRG 2 cut(s) 1048, 1392
AoxI GGCC 7 cut(s) 341, 434, 562, 862, 947, 1203, 1304
ApeKI GCWGC 6 cut(s) 269, 314, 549, 567, 755, 932
ApoI RAATTY 2 cut(s) 398, 1328
AspLEI GCGC 2 cut(s) 191, 293
AspS9I GGNCC 1 cut(s) 1204
AsuC2I CCSGG 2 cut(s) 1393, 1394
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 2 cut(s) 337, 388
AvaI CYCGRG 2 cut(s) 1048, 1392
BanI GGYRCC 3 cut(s) 503, 893, 977
BarI GAAGNNNNNNTAC 4 cut(s) 138, 170, 794, 826
Bbv12I GWGCWC 1 cut(s) 608
BbvI GCAGC 6 cut(s) 281, 326, 536, 554, 767, 919
BceAI ACGGC 1 cut(s) 1165
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 2 cut(s) 1393, 1394
BfaI CTAG 5 cut(s) 230, 752, 1208, 1269, 1302
BfmI CTRYAG 1 cut(s) 666
BisI GCNGC 9 cut(s) 187, 270, 315, 550, 565, 568, 756, 865, 933
BlsI GCNGC 9 cut(s) 188, 271, 316, 551, 566, 569, 757, 866, 934
Bme1390I CCNGG 2 cut(s) 1393, 1394
BmeT110I CYCGRG 2 cut(s) 1048, 1392
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 1204
BmiI GGNNCC 6 cut(s) 101, 123, 505, 825, 895, 979
BmrFI CCNGG 2 cut(s) 1393, 1394
BmrI ACTGGG 3 cut(s) 178, 1167, 1479
BmsI GCATC 5 cut(s) 301, 451, 610, 1189, 1325
BmuI ACTGGG 3 cut(s) 178, 1167, 1479
BpmI CTGGAG 2 cut(s) 126, 552
Bpu14I TTCGAA 2 cut(s) 337, 388
BpuMI CCSGG 2 cut(s) 1393, 1394
BsaBI GATNNNNATC 2 cut(s) 375, 1369
BsaJI CCNNGG 5 cut(s) 67, 344, 1391, 1392, 1393
BsaWI WCCGGW 1 cut(s) 1236
Bsc4I CCNNNNNNNGG 6 cut(s) 91, 776, 875, 1392, 1393, 1471
Bse118I RCCGGY 1 cut(s) 971
Bse1I ACTGG 6 cut(s) 143, 173, 484, 575, 1162, 1474
Bse3DI GCAATG 1 cut(s) 1354
Bse8I GATNNNNATC 2 cut(s) 375, 1369
BseDI CCNNGG 5 cut(s) 67, 344, 1391, 1392, 1393
BseGI GGATG 9 cut(s) 724, 865, 1031, 1348, 1370, 1381, 1387, 1412, 1461
BseJI GATNNNNATC 2 cut(s) 375, 1369
BseLI CCNNNNNNNGG 6 cut(s) 91, 776, 875, 1392, 1393, 1471
BseMI GCAATG 1 cut(s) 1354
BseMII CTCAG 2 cut(s) 760, 1118
BseNI ACTGG 6 cut(s) 143, 173, 484, 575, 1162, 1474
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 6 cut(s) 281, 326, 536, 554, 767, 919
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 7 cut(s) 343, 436, 564, 864, 949, 1205, 1306
BshNI GGYRCC 3 cut(s) 503, 893, 977
BsiHKAI GWGCWC 1 cut(s) 608
BsiHKCI CYCGRG 2 cut(s) 1048, 1392
BsiSI CCGG 3 cut(s) 972, 1237, 1393
BslFI GGGAC 1 cut(s) 1442
BslI CCNNNNNNNGG 6 cut(s) 91, 776, 875, 1392, 1393, 1471
BsmFI GGGAC 1 cut(s) 1442
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 7 cut(s) 343, 436, 564, 864, 949, 1205, 1306
BsoBI CYCGRG 2 cut(s) 1048, 1392
Bsp119I TTCGAA 2 cut(s) 337, 388
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 6 cut(s) 354, 376, 403, 485, 772, 1370
BspACI CCGC 7 cut(s) 186, 293, 565, 865, 876, 1355, 1418
BspANI GGCC 7 cut(s) 343, 436, 564, 864, 949, 1205, 1306
BspCNI CTCAG 2 cut(s) 759, 1119
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 6 cut(s) 101, 123, 505, 825, 895, 979
BspPI GGATC 3 cut(s) 384, 398, 1378
BspQI GCTCTTC 1 cut(s) 927
BspT104I TTCGAA 2 cut(s) 337, 388
BspT107I GGYRCC 3 cut(s) 503, 893, 977
BsrBI CCGCTC 1 cut(s) 876
BsrDI GCAATG 1 cut(s) 1354
BsrFI RCCGGY 1 cut(s) 971
BsrI ACTGG 6 cut(s) 143, 173, 484, 575, 1162, 1474
BssAI RCCGGY 1 cut(s) 971
BssECI CCNNGG 5 cut(s) 67, 344, 1391, 1392, 1393
BssMI GATC 6 cut(s) 354, 376, 403, 485, 772, 1370
BssT1I CCWWGG 2 cut(s) 67, 344
Bst4CI ACNGT 4 cut(s) 266, 428, 790, 994
Bst6I CTCTTC 3 cut(s) 84, 339, 927
BstBI TTCGAA 2 cut(s) 337, 388
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 5 cut(s) 8, 746, 1127, 1196, 1259
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 9 cut(s) 724, 865, 1031, 1348, 1370, 1381, 1387, 1412, 1461
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 2 cut(s) 191, 293
BstKTI GATC 6 cut(s) 357, 379, 406, 488, 775, 1373
BstMBI GATC 6 cut(s) 354, 376, 403, 485, 772, 1370
BstMWI GCNNNNNNNGC 4 cut(s) 192, 555, 564, 873
BstSCI CCNGG 2 cut(s) 1391, 1392
BstSFI CTRYAG 1 cut(s) 666
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 6 cut(s) 281, 326, 536, 554, 767, 919
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 7 cut(s) 343, 436, 564, 864, 949, 1205, 1306
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 9 cut(s) 724, 865, 1031, 1348, 1370, 1381, 1387, 1412, 1461
BtsIMutI CAGTG 4 cut(s) 5, 364, 633, 1467
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 2 cut(s) 191, 293
Cfr10I RCCGGY 1 cut(s) 971
Cfr13I GGNCC 1 cut(s) 1204
Cfr9I CCCGGG 1 cut(s) 1392
CseI GACGC 2 cut(s) 123, 671
Csp6I GTAC 1 cut(s) 811
CviAII CATG 4 cut(s) 871, 953, 1280, 1308
CviQI GTAC 1 cut(s) 811
DdeI CTNAG 5 cut(s) 8, 746, 1127, 1196, 1259
DpnI GATC 6 cut(s) 356, 378, 405, 487, 774, 1372
DpnII GATC 6 cut(s) 354, 376, 403, 485, 772, 1370
DraI TTTAAA 1 cut(s) 706
EaeI YGGCCR 2 cut(s) 562, 862
Eam1104I CTCTTC 3 cut(s) 84, 339, 927
EarI CTCTTC 3 cut(s) 84, 339, 927
Eco130I CCWWGG 2 cut(s) 67, 344
Eco147I AGGCCT 3 cut(s) 343, 436, 949
Eco88I CYCGRG 2 cut(s) 1048, 1392
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 1204
EcoT14I CCWWGG 2 cut(s) 67, 344
ErhI CCWWGG 2 cut(s) 67, 344
FaeI CATG 4 cut(s) 874, 956, 1283, 1311
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 1 cut(s) 1442
FatI CATG 4 cut(s) 870, 952, 1279, 1307
FauI CCCGC 2 cut(s) 1348, 1425
FauNDI CATATG 1 cut(s) 182
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 9 cut(s) 187, 270, 315, 550, 565, 568, 756, 865, 933
FokI GGATG 9 cut(s) 731, 872, 1018, 1355, 1368, 1374, 1377, 1399, 1448
Fsp4HI GCNGC 9 cut(s) 187, 270, 315, 550, 565, 568, 756, 865, 933
FspBI CTAG 5 cut(s) 230, 752, 1208, 1269, 1302
GlaI GCGC 2 cut(s) 190, 292
GluI GCNGC 9 cut(s) 187, 270, 315, 550, 565, 568, 756, 865, 933
GsuI CTGGAG 2 cut(s) 126, 552
HaeIII GGCC 7 cut(s) 343, 436, 564, 864, 949, 1205, 1306
HapII CCGG 3 cut(s) 972, 1237, 1393
HgaI GACGC 2 cut(s) 123, 671
HhaI GCGC 2 cut(s) 191, 293
Hin1II CATG 4 cut(s) 874, 956, 1283, 1311
Hin6I GCGC 2 cut(s) 189, 291
HinP1I GCGC 2 cut(s) 189, 291
HincII GTYRAC 2 cut(s) 76, 661
HindII GTYRAC 2 cut(s) 76, 661
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 8 cut(s) 72, 220, 673, 731, 782, 905, 1122, 1449
HpaII CCGG 3 cut(s) 972, 1237, 1393
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 5 cut(s) 76, 235, 419, 661, 767
Hpy188I TCNGA 3 cut(s) 645, 749, 1016
Hpy188III TCNNGA 3 cut(s) 407, 1126, 1175
Hpy8I GTNNAC 5 cut(s) 76, 235, 419, 661, 767
HpyAV CCTTC 4 cut(s) 333, 681, 796, 1196
HpyCH4III ACNGT 4 cut(s) 266, 428, 790, 994
HpyCH4IV ACGT 2 cut(s) 204, 1334
HpyCH4V TGCA 9 cut(s) 245, 258, 269, 314, 464, 570, 629, 1103, 1138
HpyF10VI GCNNNNNNNGC 4 cut(s) 192, 555, 564, 873
HpyF3I CTNAG 5 cut(s) 8, 746, 1127, 1196, 1259
HpySE526I ACGT 2 cut(s) 204, 1334
Hsp92II CATG 4 cut(s) 874, 956, 1283, 1311
HspAI GCGC 2 cut(s) 189, 291
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 6 cut(s) 354, 376, 403, 485, 772, 1370
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 2 cut(s) 99, 703
Lsp1109I GCAGC 6 cut(s) 281, 326, 536, 554, 767, 919
LweI GCATC 5 cut(s) 301, 451, 610, 1189, 1325
MaeI CTAG 5 cut(s) 230, 752, 1208, 1269, 1302
MaeII ACGT 2 cut(s) 204, 1334
MaeIII GTNAC 2 cut(s) 1232, 1292
MalI GATC 6 cut(s) 356, 378, 405, 487, 774, 1372
MbiI CCGCTC 1 cut(s) 876
MboI GATC 6 cut(s) 354, 376, 403, 485, 772, 1370
MboII GAAGA 8 cut(s) 7, 101, 326, 371, 495, 914, 953, 1131
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 608
MluCI AATT 7 cut(s) 33, 398, 497, 844, 909, 965, 1328
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 4 cut(s) 837, 994, 1096, 1198
MseI TTAA 5 cut(s) 524, 705, 843, 1245, 1298
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 3 cut(s) 972, 1237, 1393
MspR9I CCNGG 2 cut(s) 1393, 1394
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 570
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 192, 555, 564, 873
NciI CCSGG 2 cut(s) 1393, 1394
NdeI CATATG 1 cut(s) 182
NdeII GATC 6 cut(s) 354, 376, 403, 485, 772, 1370
NlaIII CATG 4 cut(s) 874, 956, 1283, 1311
NlaIV GGNNCC 6 cut(s) 101, 123, 505, 825, 895, 979
NspV TTCGAA 2 cut(s) 337, 388
PaeR7I CTCGAG 1 cut(s) 1048
PceI AGGCCT 3 cut(s) 343, 436, 949
PciSI GCTCTTC 1 cut(s) 927
PctI GAATGC 1 cut(s) 570
PfeI GAWTC 7 cut(s) 220, 673, 731, 782, 905, 1122, 1449
PkrI GCNGC 9 cut(s) 188, 271, 316, 551, 566, 569, 757, 866, 934
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspN4I GGNNCC 6 cut(s) 101, 123, 505, 825, 895, 979
PspPI GGNCC 1 cut(s) 1204
PspXI VCTCGAGB 1 cut(s) 1048
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 1 cut(s) 812
RsaNI GTAC 1 cut(s) 811
RseI CAYNNNNRTG 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 524, 705, 843, 1245, 1298
SatI GCNGC 9 cut(s) 187, 270, 315, 550, 565, 568, 756, 865, 933
Sau3AI GATC 6 cut(s) 354, 376, 403, 485, 772, 1370
Sau96I GGNCC 1 cut(s) 1204
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 1393, 1394
SduI GDGCHC 1 cut(s) 608
SfaNI GCATC 5 cut(s) 301, 451, 610, 1189, 1325
SfcI CTRYAG 1 cut(s) 666
Sfr274I CTCGAG 1 cut(s) 1048
SfuI TTCGAA 2 cut(s) 337, 388
SlaI CTCGAG 1 cut(s) 1048
SmaI CCCGGG 1 cut(s) 1394
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 1048
SmoI CTYRAG 1 cut(s) 1048
Sse9I AATT 7 cut(s) 33, 398, 497, 844, 909, 965, 1328
SseBI AGGCCT 3 cut(s) 343, 436, 949
SsiI CCGC 7 cut(s) 186, 293, 565, 865, 876, 1355, 1418
SspMI CTAG 5 cut(s) 230, 752, 1208, 1269, 1302
StuI AGGCCT 3 cut(s) 343, 436, 949
StyD4I CCNGG 2 cut(s) 1391, 1392
StyI CCWWGG 2 cut(s) 67, 344
TaaI ACNGT 4 cut(s) 266, 428, 790, 994
TaiI ACGT 2 cut(s) 207, 1337
TaqI TCGA 5 cut(s) 198, 337, 388, 889, 1049
TasI AATT 7 cut(s) 33, 398, 497, 844, 909, 965, 1328
TatI WGTACW 1 cut(s) 810
TauI GCSGC 3 cut(s) 189, 567, 867
TfiI GAWTC 7 cut(s) 220, 673, 731, 782, 905, 1122, 1449
Tru1I TTAA 5 cut(s) 524, 705, 843, 1245, 1298
Tru9I TTAA 5 cut(s) 524, 705, 843, 1245, 1298
TscAI CASTG 4 cut(s) 12, 364, 640, 1474
TseI GCWGC 6 cut(s) 269, 314, 549, 567, 755, 932
TspDTI ATGAA 3 cut(s) 665, 815, 1071
TspMI CCCGGG 1 cut(s) 1392
TspRI CASTG 4 cut(s) 12, 364, 640, 1474
XagI CCTNNNNNAGG 1 cut(s) 89
XapI RAATTY 2 cut(s) 398, 1328
XhoI CTCGAG 1 cut(s) 1048
XmaI CCCGGG 1 cut(s) 1392
XspI CTAG 5 cut(s) 230, 752, 1208, 1269, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.