Rmu_sc0004960.1_g000007

11S globulin seed storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004960.1
OG0020734
Physical Location & Seq
Forward (+)
24387 .. 24635
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004960.1_g000007.1.cds

Sequence Viewer

Length: 249 bp
atggcagctgagatggatctaacaccaaagtcagcggcagcggcgttcgagggagatggtggaggatattacatatggtcatttccggcacttggagaggccaatgttggcgccggcaagcttgtattgaagcctagtggttttgctcttcctcactctgcagattctgccaaactgggatatgttcttcaaggtatttccgtatatatttcattttgcttctgcccgcaaataagctgttttccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

82

Amino Acids

8.51

Weight (kDa)

4.95

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020734)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8150954.1_g000001 Rmu_co8371303.1_g000001 Rmu_sc0001971.1_g000002 Rmu_sc0004960.1_g000007
rosa_samantha Rh7CG363800 Rh7DG344300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AciI CCGC 3 cut(s) 35, 41, 227
AclWI GGATC 1 cut(s) 24
AcyI GRCGYC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 2 cut(s) 130, 191
AluBI AGCT 3 cut(s) 8, 121, 237
AluI AGCT 3 cut(s) 8, 121, 237
AlwI GGATC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 5, 38
AspLEI GCGC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 17, 50
BccI CCATC 2 cut(s) 7, 50
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 114
BisI GCNGC 4 cut(s) 6, 36, 39, 42
BlsI GCNGC 4 cut(s) 7, 37, 40, 43
BmiI GGNNCC 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 17, 50
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 86, 114
BslI CCNNNNNNNGG 1 cut(s) 92
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 3 cut(s) 35, 41, 227
BspANI GGCC 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 24
BspQI GCTCTTC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 115, 119, 227
BstDEI CTNAG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 41, 167
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 17, 50
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 101
Cac8I GCNNGC 3 cut(s) 115, 119, 227
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 113
CviJI RGCY 5 cut(s) 8, 101, 121, 133, 237
CviKI_1 RGCY 5 cut(s) 8, 101, 121, 133, 237
DdeI CTNAG 1 cut(s) 9
DinI GGCGCC 1 cut(s) 112
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
FaiI YATR 5 cut(s) 74, 76, 183, 205, 207
FauI CCCGC 1 cut(s) 234
FauNDI CATATG 1 cut(s) 74
Fnu4HI GCNGC 4 cut(s) 6, 36, 39, 42
Fsp4HI GCNGC 4 cut(s) 6, 36, 39, 42
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 112
GluI GCNGC 4 cut(s) 6, 36, 39, 42
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 86, 114
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 111
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 86, 114
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 167
HpyF3I CTNAG 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 111
HspAI GCGC 1 cut(s) 111
KasI GGCGCC 1 cut(s) 110
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 16
LguI GCTCTTC 1 cut(s) 153
LpnPI CCDG 3 cut(s) 99, 127, 161
Lsp1109I GCAGC 2 cut(s) 17, 50
MaeI CTAG 1 cut(s) 135
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 140, 179
MflI RGATCY 1 cut(s) 16
Mly113I GGCGCC 1 cut(s) 111
MnlI CCTC 4 cut(s) 43, 56, 91, 162
MroNI GCCGGC 1 cut(s) 113
MspA1I CMGCKG 3 cut(s) 8, 35, 41
MspI CCGG 2 cut(s) 86, 114
MwoI GCNNNNNNNGC 2 cut(s) 41, 167
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 1 cut(s) 111
NdeI CATATG 1 cut(s) 74
NdeII GATC 1 cut(s) 16
NgoMIV GCCGGC 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 4 cut(s) 7, 37, 40, 43
PluTI GGCGCC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 112
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 153
SatI GCNGC 4 cut(s) 6, 36, 39, 42
Sau3AI GATC 1 cut(s) 16
SetI ASST 4 cut(s) 10, 123, 196, 239
SfcI CTRYAG 1 cut(s) 159
SfoI GGCGCC 1 cut(s) 112
SsiI CCGC 3 cut(s) 35, 41, 227
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 1 cut(s) 135
TaqI TCGA 1 cut(s) 48
TauI GCSGC 2 cut(s) 38, 44
TfiI GAWTC 1 cut(s) 164
TseI GCWGC 2 cut(s) 5, 38
TspDTI ATGAA 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 190
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.