Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0020734

Physical Location & Seq

Genomic Coordinates Reverse (-)

45518901 .. 45519824

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG344300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCGGAGATGGATCTAACACCAAAGTTAGCTGCAGCGGCGTTCGAGGGAGATGGTGGAGGATATTACATATGGTCATTTCCGGCCCTTGGCGAGGCCAAAGTTGGTTCCAGGAAGCTTCTTTTGAAGCCTAGTGGCTTTGCTCTTCCTCACTATGCAGATTCTGCCAAACTGGGGGATATTTGTAGCACCTCAGGTGATAATGCCCTCAATACTGATGTCTTGCCAGTTAAGTCTTCCGGGACAGCGCTACAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

86

Amino Acids

8.89

Weight (kDa)

5.07

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020734)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8150954.1_g000001 Rmu_co8371303.1_g000001 Rmu_sc0001971.1_g000002 Rmu_sc0004960.1_g000007
rosa_samantha	Rh7CG363800 Rh7DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 38
AclWI	GGATC	1 cut(s)	21
AfeI	AGCGCT	1 cut(s)	249
AfiI	CCNNNNNNNGG	3 cut(s)	89, 94, 174
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	32, 118
AluI	AGCT	2 cut(s)	32, 118
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	249
AoxI	GGCC	2 cut(s)	84, 96
ApeKI	GCWGC	2 cut(s)	32, 35
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	19, 47
BccI	CCATC	2 cut(s)	4, 47
BciT130I	CCWGG	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	241
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	3 cut(s)	33, 36, 39
BlsI	GCNGC	3 cut(s)	34, 37, 40
Bme1390I	CCNGG	2 cut(s)	112, 241
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	2 cut(s)	112, 241
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 94, 174
Bse1I	ACTGG	2 cut(s)	177, 227
Bse21I	CCTNAGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	3 cut(s)	89, 94, 174
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	177, 227
BseXI	GCAGC	2 cut(s)	19, 47
BshFI	GGCC	2 cut(s)	86, 98
BsiSI	CCGG	2 cut(s)	83, 240
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	89, 94, 174
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	86, 98
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	2 cut(s)	5, 38
BspANI	GGCC	2 cut(s)	86, 98
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	177, 227
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 164
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	110, 239
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	19, 47
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	86, 98
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	85
CviJI	RGCY	6 cut(s)	32, 86, 98, 118, 130, 138
CviKI_1	RGCY	6 cut(s)	32, 86, 98, 118, 130, 138
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	88
Eco47III	AGCGCT	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaiI	YATR	3 cut(s)	71, 73, 156
FaqI	GGGAC	1 cut(s)	256
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	33, 36, 39
Fsp4HI	GCNGC	3 cut(s)	33, 36, 39
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	33, 36, 39
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	86, 98
HapII	CCGG	2 cut(s)	83, 240
HhaI	GCGC	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	83, 240
HphI	GGTGA	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	35, 158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 164
HpyF3I	CTNAG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	150
LpnPI	CCDG	7 cut(s)	96, 97, 124, 158, 180, 240, 253
Lsp1109I	GCAGC	2 cut(s)	19, 47
MaeI	CTAG	1 cut(s)	132
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	137, 228
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	1 cut(s)	256
MnlI	CCTC	6 cut(s)	40, 53, 88, 159, 202, 218
MseI	TTAA	2 cut(s)	231, 259
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	2 cut(s)	83, 240
MspR9I	CCNGG	2 cut(s)	112, 241
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	38, 164
NciI	CCSGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	161
PfoI	TCCNGGA	2 cut(s)	110, 239
PkrI	GCNGC	3 cut(s)	34, 37, 40
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	231, 259
SatI	GCNGC	3 cut(s)	33, 36, 39
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	112, 241
SetI	ASST	4 cut(s)	34, 120, 194, 199
SfcI	CTRYAG	1 cut(s)	33
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	2 cut(s)	5, 38
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	110, 239
StyI	CCWWGG	1 cut(s)	88
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	256
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	231, 259
Tru9I	TTAA	2 cut(s)	231, 259
TseI	GCWGC	2 cut(s)	32, 35
XagI	CCTNNNNNAGG	1 cut(s)	92
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.