Rh7CG363800

11S globulin seed storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020734
Physical Location & Seq
Reverse (-)
45190929 .. 45191836
908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG363800.1

Sequence Viewer

Length: 261 bp
ATGGCGGAGATGGATCTAACACCAAAGTTAGCTGCAGCGGCGTTCGAGGGAGATGGTGGAGGATATTACATATGGTCATTTCTGGCCCTTGGCGAGGCCAAAGTTGGTTCCAGGAAGCTTCTTTTGAAGCCTAGTGGCTTTGCTCTTCCTCACTATGCAGATTCTGCCAAACTGGGGGATATTTGTAGCACCTCAGGTGATAATGCCCTCAATACTGATGTCTTGCTAGTTAAGTCTTCCAGGACAACCCTACAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

86

Amino Acids

9.05

Weight (kDa)

5.63

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020734)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8150954.1_g000001 Rmu_co8371303.1_g000001 Rmu_sc0001971.1_g000002 Rmu_sc0004960.1_g000007
rosa_samantha Rh7CG363800 Rh7DG344300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 38
AclWI GGATC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 94, 174
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 2 cut(s) 110, 239
AluBI AGCT 2 cut(s) 32, 118
AluI AGCT 2 cut(s) 32, 118
AlwI GGATC 1 cut(s) 21
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 2 cut(s) 84, 96
ApeKI GCWGC 2 cut(s) 32, 35
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 19, 47
BccI CCATC 2 cut(s) 4, 47
BciT130I CCWGG 2 cut(s) 112, 241
BfaI CTAG 2 cut(s) 132, 227
BfmI CTRYAG 1 cut(s) 33
BisI GCNGC 3 cut(s) 33, 36, 39
BlsI GCNGC 3 cut(s) 34, 37, 40
Bme1390I CCNGG 2 cut(s) 112, 241
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 112, 241
BmrI ACTGGG 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 174
Bse1I ACTGG 1 cut(s) 177
Bse21I CCTNAGG 1 cut(s) 193
BseBI CCWGG 2 cut(s) 112, 241
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 94, 174
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 19, 47
BshFI GGCC 2 cut(s) 86, 98
BslI CCNNNNNNNGG 2 cut(s) 94, 174
BsnI GGCC 2 cut(s) 86, 98
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 2 cut(s) 5, 38
BspANI GGCC 2 cut(s) 86, 98
BspCNI CTCAG 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 112, 241
Bst6I CTCTTC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 193
BstENI CCTNNNNNAGG 1 cut(s) 92
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 38, 164
BstNI CCWGG 2 cut(s) 112, 241
BstSCI CCNGG 2 cut(s) 110, 239
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 19, 47
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
Bsu36I CCTNAGG 1 cut(s) 193
BsuRI GGCC 2 cut(s) 86, 98
CaiI CAGNNNCTG 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 85
CviJI RGCY 6 cut(s) 32, 86, 98, 118, 130, 138
CviKI_1 RGCY 6 cut(s) 32, 86, 98, 118, 130, 138
DdeI CTNAG 1 cut(s) 193
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 110, 239
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaiI YATR 3 cut(s) 71, 73, 156
FauNDI CATATG 1 cut(s) 71
Fnu4HI GCNGC 3 cut(s) 33, 36, 39
Fsp4HI GCNGC 3 cut(s) 33, 36, 39
FspBI CTAG 2 cut(s) 132, 227
GluI GCNGC 3 cut(s) 33, 36, 39
HaeIII GGCC 2 cut(s) 86, 98
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 1 cut(s) 161
HphI GGTGA 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 35, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 164
HpyF3I CTNAG 1 cut(s) 193
Kzo9I GATC 1 cut(s) 13
LguI GCTCTTC 1 cut(s) 150
LpnPI CCDG 7 cut(s) 68, 97, 124, 158, 180, 226, 253
Lsp1109I GCAGC 2 cut(s) 19, 47
MaeI CTAG 2 cut(s) 132, 227
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 137, 228
MflI RGATCY 1 cut(s) 13
MluCI AATT 1 cut(s) 256
MnlI CCTC 6 cut(s) 40, 53, 88, 159, 202, 218
MseI TTAA 2 cut(s) 231, 259
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 112, 241
MvaI CCWGG 2 cut(s) 112, 241
MwoI GCNNNNNNNGC 2 cut(s) 38, 164
NdeI CATATG 1 cut(s) 71
NdeII GATC 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 161
PfoI TCCNGGA 2 cut(s) 110, 239
PkrI GCNGC 3 cut(s) 34, 37, 40
Psp6I CCWGG 2 cut(s) 110, 239
PspGI CCWGG 2 cut(s) 110, 239
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 231, 259
SatI GCNGC 3 cut(s) 33, 36, 39
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 112, 241
SetI ASST 4 cut(s) 34, 120, 194, 199
SfcI CTRYAG 1 cut(s) 33
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 5, 38
SspMI CTAG 2 cut(s) 132, 227
StyD4I CCNGG 2 cut(s) 110, 239
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 256
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 231, 259
Tru9I TTAA 2 cut(s) 231, 259
TseI GCWGC 2 cut(s) 32, 35
XagI CCTNNNNNAGG 1 cut(s) 92
XspI CTAG 2 cut(s) 132, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.