Rmu_sc0005033.1_g000015

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005033.1
OG0021671
Physical Location & Seq
Reverse (-)
56440 .. 58259
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005033.1_g000015.1.cds

Sequence Viewer

Length: 525 bp
atgcgaggatgcgatagtatttatgttaagttgcttgaactttgtttgtctgtagctgaggaatttcaattctttccgattttgattaaggcctttggtgagctttgtgatgtgggaaaggctagggagattcatgggcatgtgttgaaattaggggttttgggagatgtttacgatgccaatttgattttgagggtttattgtaaatgtgggaaggttgaggatgcggatcgagatcaagatcgtttcggtcattcctcttcgggcttcgtcgttcggtcatttctcttctgctcggaatcttttctgctaaagacttctccttttctagccacttcgggaaccatgagtatcggaggagcacctcctattagttctagtgtcgggtctgttaacgccggtgctagtagtggatctgctgatcctgaaaatgagaccattgatgatgaaccacaattagagggggttttgtttgatgttgatcatgaagatgaagaccttgaggatgttgtccaagttgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

174

Amino Acids

18.83

Weight (kDa)

4.37

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021671)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005033.1_g000015
rosa_roxburghii Rroxscaffold_2G00132540
rosa_rugosa Rorug04G0351300
rosa_samantha Rh2BG237300 Rh2CG228500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclWI GGATC 3 cut(s) 237, 416, 421
AcsI RAATTY 1 cut(s) 62
AgsI TTSAA 4 cut(s) 38, 68, 148, 521
AluBI AGCT 2 cut(s) 56, 103
AluI AGCT 2 cut(s) 56, 103
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 3 cut(s) 237, 416, 421
AoxI GGCC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 364
BbvCI CCTCAGC 1 cut(s) 57
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 4 cut(s) 123, 329, 378, 405
BfmI CTRYAG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 343
BmsI GCATC 2 cut(s) 166, 214
BpiI GAAGAC 1 cut(s) 501
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 521
BsaBI GATNNNNATC 4 cut(s) 228, 234, 240, 480
BsaI GGTCTC 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 398
Bse8I GATNNNNATC 4 cut(s) 228, 234, 240, 480
BseGI GGATG 3 cut(s) 14, 229, 511
BseJI GATNNNNATC 4 cut(s) 228, 234, 240, 480
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 372
BshFI GGCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 428
BsnI GGCC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 6 cut(s) 229, 235, 241, 413, 421, 481
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 3 cut(s) 237, 416, 421
BspTNI GGTCTC 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 398
BssMI GATC 6 cut(s) 229, 235, 241, 413, 421, 481
Bst6I CTCTTC 2 cut(s) 265, 293
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 3 cut(s) 14, 229, 511
BstKTI GATC 6 cut(s) 232, 238, 244, 416, 424, 484
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 6 cut(s) 229, 235, 241, 413, 421, 481
BstNSI RCATGY 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 413
BstYI RGATCY 1 cut(s) 413
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 3 cut(s) 14, 229, 511
CciI TCATGA 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 398
CviAII CATG 4 cut(s) 134, 140, 346, 485
CviJI RGCY 6 cut(s) 56, 92, 103, 122, 267, 332
CviKI_1 RGCY 6 cut(s) 56, 92, 103, 122, 267, 332
DdeI CTNAG 1 cut(s) 57
DpnI GATC 6 cut(s) 231, 237, 243, 415, 423, 483
DpnII GATC 6 cut(s) 229, 235, 241, 413, 421, 481
Eam1104I CTCTTC 2 cut(s) 265, 293
EarI CTCTTC 2 cut(s) 265, 293
Eco147I AGGCCT 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 428
FaeI CATG 4 cut(s) 137, 143, 349, 488
FaiI YATR 5 cut(s) 24, 135, 141, 347, 486
FatI CATG 4 cut(s) 133, 139, 345, 484
FbaI TGATCA 1 cut(s) 481
FokI GGATG 3 cut(s) 21, 236, 518
FspBI CTAG 4 cut(s) 123, 329, 378, 405
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 399
Hin1II CATG 4 cut(s) 137, 143, 349, 488
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 2 cut(s) 130, 299
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 172, 394
Hpy188I TCNGA 3 cut(s) 78, 298, 356
Hpy188III TCNNGA 5 cut(s) 233, 239, 339, 425, 485
Hpy8I GTNNAC 2 cut(s) 172, 394
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 4 cut(s) 137, 143, 349, 488
Ksp22I TGATCA 1 cut(s) 481
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 6 cut(s) 229, 235, 241, 413, 421, 481
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 2 cut(s) 412, 438
LweI GCATC 2 cut(s) 166, 214
MaeI CTAG 4 cut(s) 123, 329, 378, 405
MalI GATC 6 cut(s) 231, 237, 243, 415, 423, 483
MboI GATC 6 cut(s) 229, 235, 241, 413, 421, 481
MboII GAAGA 4 cut(s) 252, 280, 500, 506
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 5 cut(s) 62, 68, 149, 181, 455
MnlI CCTC 8 cut(s) 52, 186, 214, 268, 350, 375, 454, 496
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 3 cut(s) 27, 87, 393
MslI CAYNNNNRTG 2 cut(s) 138, 489
MspI CCGG 1 cut(s) 399
NdeII GATC 6 cut(s) 229, 235, 241, 413, 421, 481
NlaIII CATG 4 cut(s) 137, 143, 349, 488
NlaIV GGNNCC 1 cut(s) 343
NspI RCATGY 1 cut(s) 143
PagI TCATGA 1 cut(s) 484
PceI AGGCCT 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 130, 299
PspN4I GGNNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 413
RseI CAYNNNNRTG 2 cut(s) 138, 489
SaqAI TTAA 3 cut(s) 27, 87, 393
Sau3AI GATC 6 cut(s) 229, 235, 241, 413, 421, 481
SduI GDGCHC 1 cut(s) 364
SetI ASST 5 cut(s) 58, 105, 219, 367, 501
SfaNI GCATC 2 cut(s) 166, 214
SfcI CTRYAG 1 cut(s) 51
SgrAI CRCCGGYG 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 138, 489
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 5 cut(s) 62, 68, 149, 181, 455
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 1 cut(s) 227
SspMI CTAG 4 cut(s) 123, 329, 378, 405
StuI AGGCCT 1 cut(s) 92
TaqI TCGA 1 cut(s) 232
TaqII GACCGA 2 cut(s) 239, 267
TasI AATT 5 cut(s) 62, 68, 149, 181, 455
TfiI GAWTC 2 cut(s) 130, 299
Tru1I TTAA 3 cut(s) 27, 87, 393
Tru9I TTAA 3 cut(s) 27, 87, 393
TspDTI ATGAA 4 cut(s) 122, 462, 501, 507
XapI RAATTY 1 cut(s) 62
XceI RCATGY 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 4 cut(s) 123, 329, 378, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.