Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005117.1

Orthogroup ID

OG0010217

Physical Location & Seq

Genomic Coordinates Reverse (-)

17007 .. 23125

Gene Structure 6119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005117.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

atgggaaaacgaagcactagtcggagcggtgttaaatcctccaatcgccctaaggacggcgaagacgacgatgtttctctccgccatcataggctcagttcccgccgtcgaaacgagagctcgatcagaatcttcaacgttgatctcaaaatcgtgctagggctcagcgtcgtcgccttctccatcattttgtttttcatctacaaccatgtcgcacaacacagatacctagggtcgtcacgccattccctgctccgaagctcatggatctccctcagtttcaaggtgagcacaaggagagcttgtattggggaacgtatcgccctcatgcttatctcggaatccgagctagggctcgattccttctggagagttgttaagaacatcaaggcaaactcactggttcaagaatcactcaaaacgaagctctacagctcgagatatcttgatcaaaagcttcggtggccggaaaatttccagaatccggcgagcttgaattccgacgtaaaaaattcaacaaatcgcttggattccttcatgaaagttgttcagaacttcaatctgagttcaccagtgcaagaatcacaagaaatgatggtctgtagctcgatatctcgatcgaaagcttgcagctccgatctgccggatttgaggccgtcccagtggaaaaggtcacgtccagcagctaggagaggtcgaggcgatgctgtggtggctcaggggtggcttggcgtcgacggacggcggcgctgcaggcggaggaagaaaagaccagaagaaagaaaatctaacggcagtgatgaactttcgagaagtgcacatctctttttctatttggctgatgaagagggaaatgctctaactctaggtgaagacatattggaaacttatgagaattccctccttgcatctggttctcgtatggacgttggaagttggcagctgcatctaaaatcagaaatgaggaagtttaatcgactgcagctacctgactcatccgaccataatccaactattctggtttttcagatttccgctaaaattcctttcaaggcggatatgatattcgtatctggaactgctttggaaaattcaaaagtagagaaacgtgtcagcagccttacaggtacctctttcactcagtccctcataatcttgataagtaataaagatagaaacacacagggttctactgtacgcagtatgataagcttaggaaaactgaagccacttccaaagttccagctttatagaaagattccattaaggggtcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004573 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_63 Glyco_hydro_63N

Protein Analysis

425

Amino Acids

48.3

Weight (kDa)

10.35

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67490 AT1G67490
fragaria_vesca	FvH4_4g23960 FvH4_4g23960
malus_domestica	MD13G1116700.v1.1 MD16G1117400.v1.1
prunus_persica	Prupe.1G228800_v2.0.a1
pyrus_communis	pycom13g10130 pycom16g10060
rosa_chinensis	RchiOBHm_Chr4g0430631
rosa_laevigata	RLG00000006961
rosa_multiflora	Rmu_sc0000131.1_g000015 Rmu_sc0005117.1_g000005 Rmu_sc0006863.1_g000002
rosa_roxburghii	Rroxscaffold_5G00372380
rosa_rugosa	Rorug04G0244900
rosa_samantha	Rh4AG300900 Rh4BG308000 Rh4CG325100 Rh4DG305600
rosa_wichuraiana	Rw4G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1127
AccB1I	GGYRCC	1 cut(s)	1127
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	735
AciI	CCGC	7 cut(s)	27, 82, 103, 745, 757, 1035, 1055
AclI	AACGTT	1 cut(s)	138
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	464
AcsI	RAATTY	6 cut(s)	472, 496, 511, 895, 1041, 1090
AcuI	CTGAAG	1 cut(s)	1244
AcyI	GRCGYC	1 cut(s)	732
AfaI	GTAC	2 cut(s)	1129, 1197
AfiI	CCNNNNNNNGG	4 cut(s)	56, 351, 484, 1268
AflIII	ACRYGT	1 cut(s)	1108
AgsI	TTSAA	8 cut(s)	136, 283, 407, 496, 516, 559, 1051, 1095
AhlI	ACTAGT	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	677
Alw21I	GWGCWC	3 cut(s)	122, 293, 820
Alw44I	GTGCAC	1 cut(s)	816
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	2 cut(s)	464, 653
ApaLI	GTGCAC	1 cut(s)	816
ApeKI	GCWGC	7 cut(s)	630, 683, 750, 940, 943, 982, 1116
ApoI	RAATTY	6 cut(s)	472, 496, 511, 895, 1041, 1090
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp718I	GGTACC	1 cut(s)	1127
AspA2I	CCTAGG	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	750
AsuHPI	GGTGA	3 cut(s)	298, 561, 881
AvaI	CYCGRG	1 cut(s)	436
AvrII	CCTAGG	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	1127
BanII	GRGCYC	3 cut(s)	122, 165, 357
BbsI	GAAGAC	2 cut(s)	69, 879
Bbv12I	GWGCWC	3 cut(s)	122, 293, 820
BbvI	GCAGC	7 cut(s)	642, 695, 737, 930, 952, 994, 1128
BccI	CCATC	3 cut(s)	93, 191, 589
BceAI	ACGGC	5 cut(s)	73, 90, 640, 758, 808
BclI	TGATCA	1 cut(s)	448
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	6 cut(s)	18, 158, 230, 350, 687, 866
BfmI	CTRYAG	4 cut(s)	430, 601, 751, 980
BfoI	RGCGCY	1 cut(s)	751
BisI	GCNGC	8 cut(s)	631, 684, 746, 751, 941, 944, 983, 1117
BlnI	CCTAGG	1 cut(s)	229
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	8 cut(s)	632, 685, 747, 752, 942, 945, 984, 1118
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	677
BmiI	GGNNCC	1 cut(s)	1129
BmrI	ACTGGG	1 cut(s)	655
BmsI	GCATC	3 cut(s)	694, 917, 955
BmuI	ACTGGG	1 cut(s)	655
BpiI	GAAGAC	2 cut(s)	69, 879
BpmI	CTGGAG	1 cut(s)	388
Bpu10I	CCTNAGC	2 cut(s)	717, 1213
Bpu1102I	GCTNAGC	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	732
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 351, 484, 1268
Bse1I	ACTGG	3 cut(s)	405, 572, 661
Bse21I	CCTNAGG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	995
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	4 cut(s)	56, 351, 484, 1268
BseMII	CTCAG	6 cut(s)	109, 178, 289, 554, 731, 1154
BseNI	ACTGG	3 cut(s)	405, 572, 661
BseSI	GKGCMC	1 cut(s)	820
BseXI	GCAGC	7 cut(s)	642, 695, 737, 930, 952, 994, 1128
Bsh1285I	CGRYCG	1 cut(s)	620
BshFI	GGCC	2 cut(s)	466, 655
BshNI	GGYRCC	1 cut(s)	1127
BsiEI	CGRYCG	1 cut(s)	620
BsiHKAI	GWGCWC	3 cut(s)	122, 293, 820
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	3 cut(s)	467, 485, 644
BslFI	GGGAC	2 cut(s)	643, 1129
BslI	CCNNNNNNNGG	4 cut(s)	56, 351, 484, 1268
BsmFI	GGGAC	2 cut(s)	643, 1129
BsnI	GGCC	2 cut(s)	466, 655
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	5 cut(s)	122, 165, 293, 357, 820
Bsp143I	GATC	6 cut(s)	123, 142, 267, 448, 617, 637
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	7 cut(s)	27, 82, 103, 745, 757, 1035, 1055
BspANI	GGCC	2 cut(s)	466, 655
BspCNI	CTCAG	6 cut(s)	108, 177, 288, 555, 730, 1153
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	1129
BspMAI	CTGCAG	2 cut(s)	755, 984
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	1127
BsrBI	CCGCTC	1 cut(s)	27
BsrI	ACTGG	3 cut(s)	405, 572, 661
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	6 cut(s)	123, 142, 267, 448, 617, 637
BssNI	GRCGYC	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	1195
Bst6I	CTCTTC	1 cut(s)	840
BstACI	GRCGYC	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	490, 628, 755
BstDEI	CTNAG	8 cut(s)	51, 95, 164, 275, 563, 717, 1140, 1213
BstF5I	GGATG	1 cut(s)	995
BstH2I	RGCGCY	1 cut(s)	751
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	6 cut(s)	126, 145, 270, 451, 620, 640
BstMBI	GATC	6 cut(s)	123, 142, 267, 448, 617, 637
BstMCI	CGRYCG	1 cut(s)	620
BstMWI	GCNNNNNNNGC	3 cut(s)	463, 713, 754
BstSFI	CTRYAG	4 cut(s)	430, 601, 751, 980
BstSLI	GKGCMC	1 cut(s)	820
BstV1I	GCAGC	7 cut(s)	642, 695, 737, 930, 952, 994, 1128
BstV2I	GAAGAC	2 cut(s)	69, 879
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
Bsu36I	CCTNAGG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	466, 655
BtgZI	GCGATG	1 cut(s)	717
BtrI	CACGTC	1 cut(s)	677
BtsCI	GGATG	1 cut(s)	995
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	4 cut(s)	398, 579, 668, 802
Cac8I	GCNNGC	3 cut(s)	490, 628, 755
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	750
CseI	GACGC	2 cut(s)	157, 721
Csp6I	GTAC	2 cut(s)	1128, 1196
CviAII	CATG	4 cut(s)	209, 264, 328, 538
CviQI	GTAC	2 cut(s)	1128, 1196
DdeI	CTNAG	8 cut(s)	51, 95, 164, 275, 563, 717, 1140, 1213
DpnI	GATC	6 cut(s)	125, 144, 269, 450, 619, 639
DpnII	GATC	6 cut(s)	123, 142, 267, 448, 617, 637
EaeI	YGGCCR	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
EciI	GGCGGA	3 cut(s)	71, 772, 1070
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	3 cut(s)	122, 165, 357
Eco32I	GATATC	2 cut(s)	443, 612
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	1244
Eco81I	CCTNAGG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	120
EcoRI	GAATTC	2 cut(s)	496, 895
EcoRV	GATATC	2 cut(s)	443, 612
EcoT14I	CCWWGG	1 cut(s)	229
EcoT38I	GRGCYC	3 cut(s)	122, 165, 357
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	4 cut(s)	212, 267, 331, 541
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	2 cut(s)	643, 1129
FatI	CATG	4 cut(s)	208, 263, 327, 537
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	8 cut(s)	631, 684, 746, 751, 941, 944, 983, 1117
FokI	GGATG	1 cut(s)	982
FriOI	GRGCYC	3 cut(s)	122, 165, 357
Fsp4HI	GCNGC	8 cut(s)	631, 684, 746, 751, 941, 944, 983, 1117
FspBI	CTAG	6 cut(s)	18, 158, 230, 350, 687, 866
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	8 cut(s)	631, 684, 746, 751, 941, 944, 983, 1117
GsuI	CTGGAG	1 cut(s)	388
HaeII	RGCGCY	1 cut(s)	751
HaeIII	GGCC	2 cut(s)	466, 655
HapII	CCGG	3 cut(s)	467, 485, 644
HgaI	GACGC	2 cut(s)	157, 721
HhaI	GCGC	1 cut(s)	750
Hin1I	GRCGYC	1 cut(s)	732
Hin1II	CATG	4 cut(s)	212, 267, 331, 541
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	3 cut(s)	455, 624, 1210
HinfI	GANTC	9 cut(s)	129, 341, 359, 410, 481, 530, 581, 992, 1258
HpaII	CCGG	3 cut(s)	467, 485, 644
HphI	GGTGA	3 cut(s)	298, 561, 881
Hpy166II	GTNNAC	3 cut(s)	569, 736, 818
Hpy8I	GTNNAC	3 cut(s)	569, 736, 818
Hpy99I	CGWCG	7 cut(s)	71, 111, 173, 176, 506, 737, 740
HpyAV	CCTTC	3 cut(s)	187, 373, 544
HpyCH4III	ACNGT	1 cut(s)	1195
HpyCH4IV	ACGT	6 cut(s)	138, 316, 504, 676, 927, 1108
HpyCH4V	TGCA	7 cut(s)	577, 630, 753, 818, 908, 946, 982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	463, 713, 754
HpyF3I	CTNAG	8 cut(s)	51, 95, 164, 275, 563, 717, 1140, 1213
HpySE526I	ACGT	6 cut(s)	138, 316, 504, 676, 927, 1108
Hsp92I	GRCGYC	1 cut(s)	732
Hsp92II	CATG	4 cut(s)	212, 267, 331, 541
HspAI	GCGC	1 cut(s)	748
KpnI	GGTACC	1 cut(s)	1131
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	123, 142, 267, 448, 617, 637
LmnI	GCTCC	3 cut(s)	24, 258, 638
Lsp1109I	GCAGC	7 cut(s)	642, 695, 737, 930, 952, 994, 1128
LweI	GCATC	3 cut(s)	694, 917, 955
MaeI	CTAG	6 cut(s)	18, 158, 230, 350, 687, 866
MaeII	ACGT	6 cut(s)	138, 316, 504, 676, 927, 1108
MaeIII	GTNAC	2 cut(s)	237, 672
MalI	GATC	6 cut(s)	125, 144, 269, 450, 619, 639
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	6 cut(s)	123, 142, 267, 448, 617, 637
MboII	GAAGA	6 cut(s)	74, 124, 775, 788, 857, 884
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	5 cut(s)	122, 165, 293, 357, 820
MluCI	AATT	6 cut(s)	472, 496, 511, 895, 1041, 1090
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	4 cut(s)	525, 910, 1023, 1034
MseI	TTAA	4 cut(s)	33, 378, 972, 1265
MspA1I	CMGCKG	1 cut(s)	943
MspI	CCGG	3 cut(s)	467, 485, 644
MwoI	GCNNNNNNNGC	3 cut(s)	463, 713, 754
NdeII	GATC	6 cut(s)	123, 142, 267, 448, 617, 637
NlaIII	CATG	4 cut(s)	212, 267, 331, 541
NlaIV	GGNNCC	1 cut(s)	1129
NmuCI	GTSAC	2 cut(s)	237, 672
PaeR7I	CTCGAG	1 cut(s)	436
PagI	TCATGA	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	8 cut(s)	129, 341, 359, 410, 481, 530, 581, 1258
PkrI	GCNGC	8 cut(s)	632, 685, 747, 752, 942, 945, 984, 1118
Ple19I	CGATCG	1 cut(s)	620
PleI	GAGTC	1 cut(s)	986
PpsI	GAGTC	1 cut(s)	986
Psp124BI	GAGCTC	1 cut(s)	122
Psp1406I	AACGTT	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	1129
PstI	CTGCAG	2 cut(s)	755, 984
PsuI	RGATCY	1 cut(s)	267
PvuI	CGATCG	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	2 cut(s)	1129, 1197
RsaNI	GTAC	2 cut(s)	1128, 1196
SacI	GAGCTC	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	734
SaqAI	TTAA	4 cut(s)	33, 378, 972, 1265
SatI	GCNGC	8 cut(s)	631, 684, 746, 751, 941, 944, 983, 1117
Sau3AI	GATC	6 cut(s)	123, 142, 267, 448, 617, 637
SchI	GAGTC	1 cut(s)	986
SduI	GDGCHC	5 cut(s)	122, 165, 293, 357, 820
SfaNI	GCATC	3 cut(s)	694, 917, 955
SfcI	CTRYAG	4 cut(s)	430, 601, 751, 980
Sfr274I	CTCGAG	1 cut(s)	436
SgrDI	CGTCGACG	1 cut(s)	734
SlaI	CTCGAG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	6 cut(s)	472, 496, 511, 895, 1041, 1090
SsiI	CCGC	7 cut(s)	27, 82, 103, 745, 757, 1035, 1055
SspMI	CTAG	6 cut(s)	18, 158, 230, 350, 687, 866
SstI	GAGCTC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	1195
TaiI	ACGT	6 cut(s)	141, 319, 507, 679, 930, 1111
TasI	AATT	6 cut(s)	472, 496, 511, 895, 1041, 1090
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	8 cut(s)	129, 341, 359, 410, 481, 530, 581, 1258
Tru1I	TTAA	4 cut(s)	33, 378, 972, 1265
Tru9I	TTAA	4 cut(s)	33, 378, 972, 1265
TscAI	CASTG	4 cut(s)	405, 579, 668, 802
TseFI	GTSAC	2 cut(s)	237, 672
TseI	GCWGC	7 cut(s)	630, 683, 750, 940, 943, 982, 1116
Tsp45I	GTSAC	2 cut(s)	237, 672
TspDTI	ATGAA	5 cut(s)	187, 526, 554, 816, 858
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	4 cut(s)	405, 579, 668, 802
VneI	GTGCAC	1 cut(s)	816
XapI	RAATTY	6 cut(s)	472, 496, 511, 895, 1041, 1090
XhoI	CTCGAG	1 cut(s)	436
XmaJI	CCTAGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	6 cut(s)	18, 158, 230, 350, 687, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.