Rmu_sc0005126.1_g000002

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005126.1
OG0007448
Physical Location & Seq
Reverse (-)
9058 .. 11190
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005126.1_g000002.1.cds

Sequence Viewer

Length: 1089 bp
atgcatcaaacacatttacatacactagacaaatcaatctgtcgcaaacttaatgtgttcaataacagagagtatggagttgtggactctgagaacttttttgtttgtttttctccagaaggtttgggtcctggaacactagttggttctgctgcattcgaccttttccccatccatgctgtttgtgttgtagttcctaaagctggagagctgaaaaagatagctgatataggagtctggctggttgagctcttttggtctttctgggcatatatttggttatatataattctagaggtgtggacaccaaacgtgattacactatgggaggccttattgacagtactacaatacgggttactgctgatacatgcttatgctcaagacaagcagtggccctacttttctcttcctttgccaagaagtaagagacaagaggactgggtgccagctgagcctgttgcatgcaagcttgatagtggtccccgtgatgagtattctgaaatacttcatgttggtgaagatgaaaacagaggcgttgttgatattttctccatacattcagagacaggaaatggtgtagttccagtgtatcaaaaagtctctggaaatgacgaaactcctgagtcatctaataaggattgtcaagagaaaatggtttcagaagatcatccagtttttatactttggaggcaacaatttgtagacgcagtcaagctcgaaagcacagaatcaagaaaactgaacaacttctatttgcgactagcaagaatgttatggcaattacttcttgctccctggagactattatttgcatttgttcctccttataacattgctcatggctgggttgccttcatctgttccttaattttcatcagtgtgatagcttacattgtaacacaactcactgatctcataagttgtgtcacaggaataaatccttatgtcatagcatttaccgcattagcaagtggaacttcatggccagatttagttgcaagtaagattgccgctgaacgtcagttgacagctgactctgccattgcaaacatcatttgcaggtttactcttaaatctccattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003008 GO:0003674 GO:0005215 GO:0005432 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007584 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0008324 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015630 GO:0015672 GO:0016020 GO:0016021 GO:0019725 GO:0021537 GO:0022804 GO:0022857 GO:0022890 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0030425 GO:0030900 GO:0031224 GO:0031226 GO:0031667 GO:0032501 GO:0032502 GO:0033273 GO:0033280 GO:0033993 GO:0034220 GO:0035725 GO:0036477 GO:0042221 GO:0042592 GO:0042995 GO:0043005 GO:0043025 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044297 GO:0044309 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045202 GO:0046873 GO:0048167 GO:0048168 GO:0048172 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050806 GO:0050877 GO:0050890 GO:0050896 GO:0051179 GO:0051234 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060291 GO:0060322 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0097447 GO:0097458 GO:0097553 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098703 GO:0098739 GO:0098771 GO:0098794 GO:0099080 GO:0099081 GO:0099177 GO:0099512 GO:0099513 GO:0099516 GO:0099587 GO:0120025 GO:0120038 GO:1901660 GO:1901700 GO:1902656 GO:1990034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

362

Amino Acids

41.01

Weight (kDa)

5.4

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
Acc36I ACCTGC 1 cut(s) 1053
AccB1I GGYRCC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 705
AciI CCGC 2 cut(s) 963, 1014
AcoI YGGCCR 1 cut(s) 986
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 61
AhlI ACTAGT 1 cut(s) 139
AjnI CCWGG 2 cut(s) 130, 797
AluBI AGCT 9 cut(s) 203, 211, 224, 250, 452, 472, 718, 890, 1034
AluI AGCT 9 cut(s) 203, 211, 224, 250, 452, 472, 718, 890, 1034
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 4 cut(s) 424, 560, 607, 796
AoxI GGCC 3 cut(s) 330, 395, 986
ApeKI GCWGC 1 cut(s) 152
Asp700I GAANNNNTTC 2 cut(s) 507, 749
AspS9I GGNCC 3 cut(s) 128, 396, 482
AsuHPI GGTGA 1 cut(s) 530
AvaII GGWCC 2 cut(s) 128, 482
BalI TGGCCA 1 cut(s) 988
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 2 cut(s) 132, 799
BcoDI GTCTC 4 cut(s) 424, 560, 607, 796
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 4 cut(s) 26, 140, 293, 764
BfuAI ACCTGC 1 cut(s) 1053
BisI GCNGC 2 cut(s) 153, 1014
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 2 cut(s) 154, 1015
BmcAI AGTACT 1 cut(s) 345
Bme1390I CCNGG 2 cut(s) 132, 799
Bme18I GGWCC 2 cut(s) 128, 482
BmgT120I GGNCC 3 cut(s) 128, 396, 482
BmiI GGNNCC 3 cut(s) 129, 447, 484
BmrFI CCNGG 2 cut(s) 132, 799
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 451
BpmI CTGGAG 3 cut(s) 99, 225, 820
Bpu1102I GCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 797
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 3 cut(s) 446, 587, 674
Bse3DI GCAATG 2 cut(s) 834, 1044
BseBI CCWGG 2 cut(s) 132, 799
BseDI CCNNGG 1 cut(s) 797
BseGI GGATG 2 cut(s) 171, 670
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 2 cut(s) 834, 1044
BseMII CTCAG 3 cut(s) 81, 444, 615
BseNI ACTGG 3 cut(s) 446, 587, 674
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 846
BshFI GGCC 3 cut(s) 332, 397, 988
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 4 cut(s) 424, 560, 607, 796
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 3 cut(s) 332, 397, 988
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 667, 913
Bsp1720I GCTNAGC 1 cut(s) 453
BspACI CCGC 2 cut(s) 963, 1014
BspANI GGCC 3 cut(s) 332, 397, 988
BspCNI CTCAG 3 cut(s) 82, 445, 616
BspLI GGNNCC 3 cut(s) 129, 447, 484
BspMI ACCTGC 1 cut(s) 1053
BspT107I GGYRCC 1 cut(s) 445
BsrDI GCAATG 2 cut(s) 834, 1044
BsrI ACTGG 3 cut(s) 446, 587, 674
BssECI CCNNGG 1 cut(s) 797
BssMI GATC 2 cut(s) 667, 913
Bst2UI CCWGG 2 cut(s) 132, 799
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 414
BstC8I GCNNGC 3 cut(s) 450, 466, 470
BstDEI CTNAG 3 cut(s) 90, 453, 624
BstF5I GGATG 2 cut(s) 171, 670
BstKTI GATC 2 cut(s) 670, 916
BstMAI GTCTC 4 cut(s) 424, 560, 607, 796
BstMBI GATC 2 cut(s) 667, 913
BstMWI GCNNNNNNNGC 4 cut(s) 247, 454, 962, 1040
BstNI CCWGG 2 cut(s) 132, 799
BstNSI RCATGY 2 cut(s) 374, 468
BstSCI CCNGG 2 cut(s) 130, 797
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 332, 397, 988
BtsCI GGATG 2 cut(s) 171, 670
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 4 cut(s) 398, 594, 886, 909
BveI ACCTGC 1 cut(s) 1053
Cac8I GCNNGC 3 cut(s) 450, 466, 470
Cfr13I GGNCC 3 cut(s) 128, 396, 482
CseI GACGC 1 cut(s) 716
Csp6I GTAC 1 cut(s) 344
CviAII CATG 6 cut(s) 176, 371, 465, 512, 842, 984
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 3 cut(s) 90, 453, 624
DpnI GATC 2 cut(s) 669, 915
DpnII GATC 2 cut(s) 667, 913
EaeI YGGCCR 1 cut(s) 986
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 128, 482
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 130, 797
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 6 cut(s) 179, 374, 468, 515, 845, 987
FalI AAGNNNNNCTT 2 cut(s) 964, 996
FaqI GGGAC 1 cut(s) 468
FatI CATG 6 cut(s) 175, 370, 464, 511, 841, 983
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 2 cut(s) 153, 1014
FokI GGATG 2 cut(s) 158, 657
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 153, 1014
FspBI CTAG 4 cut(s) 26, 140, 293, 764
GluI GCNGC 2 cut(s) 153, 1014
GsaI CCCAGC 1 cut(s) 850
GsuI CTGGAG 3 cut(s) 99, 225, 820
HaeIII GGCC 3 cut(s) 332, 397, 988
HgaI GACGC 1 cut(s) 716
Hin1II CATG 6 cut(s) 179, 374, 468, 515, 845, 987
HincII GTYRAC 1 cut(s) 1029
HindII GTYRAC 1 cut(s) 1029
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 5 cut(s) 86, 234, 626, 731, 1037
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 5 cut(s) 85, 303, 706, 1029, 1068
Hpy188I TCNGA 4 cut(s) 91, 502, 565, 664
Hpy188III TCNNGA 7 cut(s) 116, 293, 383, 606, 623, 647, 735
Hpy8I GTNNAC 5 cut(s) 85, 303, 706, 1029, 1068
HpyAV CCTTC 2 cut(s) 113, 865
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 2 cut(s) 312, 1021
HpyCH4V TGCA 8 cut(s) 4, 155, 464, 468, 815, 1001, 1049, 1062
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 454, 962, 1040
HpyF3I CTNAG 3 cut(s) 90, 453, 624
HpySE526I ACGT 2 cut(s) 312, 1021
Hsp92II CATG 6 cut(s) 179, 374, 468, 515, 845, 987
Kzo9I GATC 2 cut(s) 667, 913
LmnI GCTCC 1 cut(s) 799
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 13
MaeI CTAG 4 cut(s) 26, 140, 293, 764
MaeII ACGT 2 cut(s) 312, 1021
MaeIII GTNAC 3 cut(s) 357, 898, 928
MalI GATC 2 cut(s) 669, 915
MboI GATC 2 cut(s) 667, 913
MboII GAAGA 3 cut(s) 401, 533, 677
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 988
MluCI AATT 4 cut(s) 288, 698, 782, 870
MluNI TGGCCA 1 cut(s) 988
MlyI GAGTC 4 cut(s) 80, 243, 635, 1031
MnlI CCTC 6 cut(s) 289, 322, 430, 527, 684, 834
Mox20I TGGCCA 1 cut(s) 988
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 507, 749
MscI TGGCCA 1 cut(s) 988
MseI TTAA 4 cut(s) 51, 869, 1074, 1087
MslI CAYNNNNRTG 3 cut(s) 375, 516, 881
Msp20I TGGCCA 1 cut(s) 988
MspA1I CMGCKG 3 cut(s) 452, 1016, 1034
MspR9I CCNGG 2 cut(s) 132, 799
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 2 cut(s) 132, 799
MwoI GCNNNNNNNGC 4 cut(s) 247, 454, 962, 1040
NdeII GATC 2 cut(s) 667, 913
NlaIII CATG 6 cut(s) 179, 374, 468, 515, 845, 987
NlaIV GGNNCC 3 cut(s) 129, 447, 484
NmuCI GTSAC 1 cut(s) 928
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 374, 468
PaeI GCATGC 1 cut(s) 468
PceI AGGCCT 1 cut(s) 332
PctI GAATGC 1 cut(s) 155
PdmI GAANNNNTTC 2 cut(s) 507, 749
PfeI GAWTC 1 cut(s) 731
PflFI GACNNNGTC 1 cut(s) 710
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 2 cut(s) 154, 1015
PleI GAGTC 4 cut(s) 80, 242, 634, 1031
PpsI GAGTC 4 cut(s) 80, 242, 634, 1031
PpuMI RGGWCCY 1 cut(s) 128
PsiI TTATAA 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 130, 797
PspFI CCCAGC 1 cut(s) 846
PspGI CCWGG 2 cut(s) 130, 797
PspN4I GGNNCC 3 cut(s) 129, 447, 484
PspPI GGNCC 3 cut(s) 128, 396, 482
PspPPI RGGWCCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 710
PvuII CAGCTG 2 cut(s) 452, 1034
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 3 cut(s) 375, 516, 881
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 4 cut(s) 51, 869, 1074, 1087
SatI GCNGC 2 cut(s) 153, 1014
Sau3AI GATC 2 cut(s) 667, 913
Sau96I GGNCC 3 cut(s) 128, 396, 482
ScaI AGTACT 1 cut(s) 345
SchI GAGTC 4 cut(s) 80, 243, 635, 1031
ScrFI CCNGG 2 cut(s) 132, 799
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 2 cut(s) 128, 482
SmiMI CAYNNNNRTG 3 cut(s) 375, 516, 881
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
SpeI ACTAGT 1 cut(s) 139
SphI GCATGC 1 cut(s) 468
Sse9I AATT 4 cut(s) 288, 698, 782, 870
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 2 cut(s) 963, 1014
SspMI CTAG 4 cut(s) 26, 140, 293, 764
SstI GAGCTC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 130, 797
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 2 cut(s) 315, 1024
TaqI TCGA 2 cut(s) 159, 720
TasI AATT 4 cut(s) 288, 698, 782, 870
TatI WGTACW 1 cut(s) 343
TauI GCSGC 1 cut(s) 1016
TfiI GAWTC 1 cut(s) 731
Tru1I TTAA 4 cut(s) 51, 869, 1074, 1087
Tru9I TTAA 4 cut(s) 51, 869, 1074, 1087
TscAI CASTG 4 cut(s) 398, 594, 886, 916
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 5 cut(s) 500, 540, 847, 865, 972
TspRI CASTG 4 cut(s) 398, 594, 886, 916
Tth111I GACNNNGTC 1 cut(s) 710
VpaK11BI GGWCC 2 cut(s) 128, 482
XbaI TCTAGA 1 cut(s) 292
XceI RCATGY 2 cut(s) 374, 468
XmiI GTMKAC 1 cut(s) 705
XmnI GAANNNNTTC 2 cut(s) 507, 749
XspI CTAG 4 cut(s) 26, 140, 293, 764
ZrmI AGTACT 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.