Rorug06G0240800

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007448
Physical Location & Seq
Reverse (-)
38409944 .. 38411837
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0240800.1

Sequence Viewer

Length: 990 bp
ATGTTGTACTTGGCCGTGTCATTTGTTTCTCTTCTATTGTTCTTTAATATCCGAGGAGGCTCAGCAGAGCAATGTGGAAGGCAAGCAGGGGGGGCTTCGTGCCCGGGAGGGCAGTGCTGCAGCAAGTTTGGCTGGTGTGGCACTACACCTGATTACTGCGGCACCGGTTGCCAAAGCCAATGTGGCGGTGGTGGTGGCGGGGGCGGTGGTGACATTGGGGGTCTAGTATCAAAGGCCACCTTTAATCAGATACTTAAGCATCGGAACGATGGTGGTTGCCCTGCCAAAGGGTTTTATACTTATGATGCTTTCATTGCAGCTGCCAAGGCTTTCCCCGCCTTTGCTACAACTGGTGACACTGCCACCCGTAAAAGAGAGATTGCTGCTTTCTTAGCTCAAACTTCTCATGAAACTACTGGGGGATGGGGGACTGCACCTGATGGACCCTATGCATGGGGCTATTGTTTTAACAAGGAGAAAAATCCAGGATCTTACTGTGCCTCGGATCCAAATTATCCATGTGCTGCTGGTAAGCAGTATTATGGCCGTGGTCCTATTCAACTTTCTTGGAACTACAACTACGGGCAGTGTGGAAAGGCCATAGGAGCGAACCTGTTGAACGACCCGGACCTTGTTGCCACAGACCCTGTCATCTCCTTCAAGACAGCAATCTGGTTCTGGATGACCCCTCAGTCACCCAAGCCCTCATGCCATGATGTCATCACCTGGAGATGGAACCCTTCCGGAGCTGATCAGTCAGCGGGTAGGTATTCCGGGTATGGTACGATCACAAATATCATCAACGGTGGACTCGAATGTGGTAAAGGATGGGATGGGAGAGTGGCGGACCGCATTGGGTTTTTCAAGAGGTACTGTGATTTGCTTGGGATTGGTTATGGTGACAACCTTGACTGTTATAATCAGAAGCCTTTTGGGTCTGGACTCAGTACTTATTATTCATCCTCAAGAGAGTCGATCGATGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003008 GO:0003674 GO:0005215 GO:0005432 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007584 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0008324 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015630 GO:0015672 GO:0016020 GO:0016021 GO:0019725 GO:0021537 GO:0022804 GO:0022857 GO:0022890 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0030425 GO:0030900 GO:0031224 GO:0031226 GO:0031667 GO:0032501 GO:0032502 GO:0033273 GO:0033280 GO:0033993 GO:0034220 GO:0035725 GO:0036477 GO:0042221 GO:0042592 GO:0042995 GO:0043005 GO:0043025 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044297 GO:0044309 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045202 GO:0046873 GO:0048167 GO:0048168 GO:0048172 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050806 GO:0050877 GO:0050890 GO:0050896 GO:0051179 GO:0051234 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060291 GO:0060322 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0097447 GO:0097458 GO:0097553 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098703 GO:0098739 GO:0098771 GO:0098794 GO:0099080 GO:0099081 GO:0099177 GO:0099512 GO:0099513 GO:0099516 GO:0099587 GO:0120025 GO:0120038 GO:1901660 GO:1901700 GO:1902656 GO:1990034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

329

Amino Acids

34.98

Weight (kDa)

8.05

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 24 - 61 4.7e-14 Chitin recognition protein
Glyco_hydro_19 PF00182 75 - 305 3e-127 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
AasI GACNNNNNNGTC 1 cut(s) 691
AccB1I GGYRCC 1 cut(s) 161
AccIII TCCGGA 1 cut(s) 743
AciI CCGC 8 cut(s) 159, 186, 198, 204, 336, 761, 845, 850
AclWI GGATC 3 cut(s) 496, 500, 513
AcoI YGGCCR 2 cut(s) 12, 544
AfaI GTAC 4 cut(s) 8, 784, 872, 949
AfiI CCNNNNNNNGG 3 cut(s) 287, 453, 732
AflII CTTAAG 1 cut(s) 254
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 4 cut(s) 560, 619, 661, 865
AjnI CCWGG 2 cut(s) 484, 725
AluBI AGCT 3 cut(s) 320, 395, 749
AluI AGCT 3 cut(s) 320, 395, 749
AlwI GGATC 3 cut(s) 496, 500, 513
AlwNI CAGNNNCTG 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 743
AoxI GGCC 4 cut(s) 12, 234, 544, 597
ApeKI GCWGC 6 cut(s) 117, 120, 317, 320, 383, 524
AsiGI ACCGGT 1 cut(s) 164
AspS9I GGNCC 4 cut(s) 443, 551, 628, 847
AsuC2I CCSGG 4 cut(s) 104, 105, 626, 775
AsuHPI GGTGA 5 cut(s) 221, 365, 687, 715, 911
AvaI CYCGRG 1 cut(s) 103
AvaII GGWCC 4 cut(s) 443, 551, 628, 847
BaeGI GKGCMC 1 cut(s) 104
BamHI GGATCC 1 cut(s) 505
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 6 cut(s) 104, 132, 307, 329, 370, 511
BccI CCATC 6 cut(s) 263, 417, 434, 726, 822, 827
BceAI ACGGC 1 cut(s) 531
BciT130I CCWGG 2 cut(s) 486, 727
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 4 cut(s) 104, 105, 626, 775
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 254
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 7 cut(s) 118, 121, 160, 318, 321, 384, 525
BlpI GCTNAGC 1 cut(s) 61
BlsI GCNGC 7 cut(s) 119, 122, 161, 319, 322, 385, 526
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 6 cut(s) 104, 105, 486, 626, 727, 775
Bme18I GGWCC 4 cut(s) 443, 551, 628, 847
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 4 cut(s) 443, 551, 628, 847
BmiI GGNNCC 4 cut(s) 163, 445, 507, 737
BmrFI CCNGG 6 cut(s) 104, 105, 486, 626, 727, 775
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 268, 295
BmuI ACTGGG 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 748
Bpu1102I GCTNAGC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 949
BpuMI CCSGG 4 cut(s) 104, 105, 626, 775
Bsa29I ATCGAT 1 cut(s) 978
BsaJI CCNNGG 5 cut(s) 52, 103, 324, 501, 547
BsaWI WCCGGW 2 cut(s) 164, 743
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 453, 732
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 355, 421
Bse3DI GCAATG 2 cut(s) 77, 312
BseAI TCCGGA 1 cut(s) 743
BseBI CCWGG 2 cut(s) 486, 727
BseCI ATCGAT 1 cut(s) 978
BseDI CCNNGG 5 cut(s) 52, 103, 324, 501, 547
BseGI GGATG 5 cut(s) 428, 687, 833, 838, 959
BseLI CCNNNNNNNGG 3 cut(s) 287, 453, 732
BseMI GCAATG 2 cut(s) 77, 312
BseMII CTCAG 3 cut(s) 75, 704, 958
BseNI ACTGG 2 cut(s) 355, 421
BseRI GAGGAG 1 cut(s) 69
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 6 cut(s) 104, 132, 307, 329, 370, 511
BsgI GTGCAG 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 978
BshFI GGCC 4 cut(s) 14, 236, 546, 599
BshNI GGYRCC 1 cut(s) 161
BshTI ACCGGT 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 978
BsiEI CGRYCG 1 cut(s) 978
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 5 cut(s) 104, 165, 626, 744, 774
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 3 cut(s) 287, 453, 732
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 4 cut(s) 14, 236, 546, 599
BsoBI CYCGRG 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 743
Bsp143I GATC 5 cut(s) 488, 505, 751, 786, 975
Bsp1720I GCTNAGC 1 cut(s) 61
BspACI CCGC 8 cut(s) 159, 186, 198, 204, 336, 761, 845, 850
BspANI GGCC 4 cut(s) 14, 236, 546, 599
BspCNI CTCAG 3 cut(s) 74, 703, 957
BspDI ATCGAT 1 cut(s) 978
BspEI TCCGGA 1 cut(s) 743
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 4 cut(s) 163, 445, 507, 737
BspMAI CTGCAG 1 cut(s) 122
BspPI GGATC 3 cut(s) 496, 500, 513
BspT107I GGYRCC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 2 cut(s) 77, 312
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 355, 421
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 5 cut(s) 52, 103, 324, 501, 547
BssMI GATC 5 cut(s) 488, 505, 751, 786, 975
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 486, 727
Bst4CI ACNGT 4 cut(s) 497, 806, 875, 914
Bst6I CTCTTC 1 cut(s) 36
BstAFI CTTAAG 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 4 cut(s) 61, 391, 690, 944
BstDSI CCRYGG 1 cut(s) 547
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 5 cut(s) 428, 687, 833, 838, 959
BstKTI GATC 5 cut(s) 491, 508, 754, 789, 978
BstMBI GATC 5 cut(s) 488, 505, 751, 786, 975
BstMCI CGRYCG 1 cut(s) 978
BstNI CCWGG 2 cut(s) 486, 727
BstSCI CCNGG 6 cut(s) 102, 103, 484, 624, 725, 773
BstSFI CTRYAG 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 104
BstV1I GCAGC 6 cut(s) 104, 132, 307, 329, 370, 511
BstX2I RGATCY 2 cut(s) 488, 505
BstYI RGATCY 2 cut(s) 488, 505
Bsu15I ATCGAT 1 cut(s) 978
BsuRI GGCC 4 cut(s) 14, 236, 546, 599
BsuTUI ATCGAT 1 cut(s) 978
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 5 cut(s) 428, 687, 833, 838, 959
BtsI GCAGTG 3 cut(s) 119, 357, 593
BtsIMutI CAGTG 3 cut(s) 119, 357, 593
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 647
CciI TCATGA 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 443, 551, 628, 847
Cfr9I CCCGGG 1 cut(s) 103
ClaI ATCGAT 1 cut(s) 978
CpoI CGGWCCG 1 cut(s) 847
Csp6I GTAC 4 cut(s) 7, 783, 871, 948
CspAI ACCGGT 1 cut(s) 164
CspI CGGWCCG 1 cut(s) 847
CviAII CATG 5 cut(s) 407, 453, 519, 708, 713
CviQI GTAC 4 cut(s) 7, 783, 871, 948
DdeI CTNAG 4 cut(s) 61, 391, 690, 944
DpnI GATC 5 cut(s) 490, 507, 753, 788, 977
DpnII GATC 5 cut(s) 488, 505, 751, 786, 975
DrdI GACNNNNNNGTC 1 cut(s) 691
DseDI GACNNNNNNGTC 1 cut(s) 691
EaeI YGGCCR 2 cut(s) 12, 544
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 1 cut(s) 860
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 4 cut(s) 443, 551, 628, 847
Eco88I CYCGRG 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 484, 725
EcoT14I CCWWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 5 cut(s) 410, 456, 522, 711, 716
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 442
FatI CATG 5 cut(s) 406, 452, 518, 707, 712
FauI CCCGC 3 cut(s) 191, 343, 754
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 7 cut(s) 118, 121, 160, 318, 321, 384, 525
FokI GGATG 5 cut(s) 435, 694, 840, 845, 946
Fsp4HI GCNGC 7 cut(s) 118, 121, 160, 318, 321, 384, 525
FspBI CTAG 1 cut(s) 224
GluI GCNGC 7 cut(s) 118, 121, 160, 318, 321, 384, 525
GsuI CTGGAG 1 cut(s) 748
HaeIII GGCC 4 cut(s) 14, 236, 546, 599
HapII CCGG 5 cut(s) 104, 165, 626, 744, 774
Hin1II CATG 5 cut(s) 410, 456, 522, 711, 716
HinfI GANTC 3 cut(s) 810, 942, 971
HpaII CCGG 5 cut(s) 104, 165, 626, 744, 774
HphI GGTGA 5 cut(s) 221, 365, 687, 715, 911
Hpy166II GTNNAC 1 cut(s) 809
Hpy188I TCNGA 5 cut(s) 53, 249, 264, 505, 924
Hpy188III TCNNGA 7 cut(s) 407, 661, 679, 744, 865, 939, 966
Hpy8I GTNNAC 1 cut(s) 809
HpyAV CCTTC 3 cut(s) 72, 667, 750
HpyCH4III ACNGT 4 cut(s) 497, 806, 875, 914
HpyCH4V TGCA 4 cut(s) 120, 317, 434, 452
HpyF3I CTNAG 4 cut(s) 61, 391, 690, 944
Hsp92II CATG 5 cut(s) 410, 456, 522, 711, 716
Kpn2I TCCGGA 1 cut(s) 743
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 5 cut(s) 488, 505, 751, 786, 975
LmnI GCTCC 2 cut(s) 605, 746
Lsp1109I GCAGC 6 cut(s) 104, 132, 307, 329, 370, 511
LweI GCATC 2 cut(s) 268, 295
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 4 cut(s) 209, 353, 693, 899
MalI GATC 5 cut(s) 490, 507, 753, 788, 977
MboI GATC 5 cut(s) 488, 505, 751, 786, 975
MboII GAAGA 1 cut(s) 23
MflI RGATCY 2 cut(s) 488, 505
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 511
MlyI GAGTC 3 cut(s) 804, 936, 980
MnlI CCTC 8 cut(s) 47, 50, 101, 511, 699, 715, 861, 973
Mph1103I ATGCAT 1 cut(s) 454
MroI TCCGGA 1 cut(s) 743
MseI TTAA 4 cut(s) 45, 243, 255, 468
MspA1I CMGCKG 2 cut(s) 320, 761
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 5 cut(s) 104, 165, 626, 744, 774
MspR9I CCNGG 6 cut(s) 104, 105, 486, 626, 727, 775
MvaI CCWGG 2 cut(s) 486, 727
NciI CCSGG 4 cut(s) 104, 105, 626, 775
NdeII GATC 5 cut(s) 488, 505, 751, 786, 975
NlaIII CATG 5 cut(s) 410, 456, 522, 711, 716
NlaIV GGNNCC 4 cut(s) 163, 445, 507, 737
NmuCI GTSAC 4 cut(s) 209, 353, 693, 899
NsiI ATGCAT 1 cut(s) 454
PagI TCATGA 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 810
PflFI GACNNNGTC 1 cut(s) 647
PfoI TCCNGGA 1 cut(s) 484
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 7 cut(s) 119, 122, 161, 319, 322, 385, 526
Ple19I CGATCG 1 cut(s) 978
PleI GAGTC 3 cut(s) 804, 936, 979
PpsI GAGTC 3 cut(s) 804, 936, 979
PsiI TTATAA 1 cut(s) 918
Psp6I CCWGG 2 cut(s) 484, 725
PspGI CCWGG 2 cut(s) 484, 725
PspN4I GGNNCC 4 cut(s) 163, 445, 507, 737
PspPI GGNCC 4 cut(s) 443, 551, 628, 847
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PstI CTGCAG 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 2 cut(s) 488, 505
PsyI GACNNNGTC 1 cut(s) 647
PvuI CGATCG 1 cut(s) 978
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 4 cut(s) 8, 784, 872, 949
RsaNI GTAC 4 cut(s) 7, 783, 871, 948
Rsr2I CGGWCCG 1 cut(s) 847
RsrII CGGWCCG 1 cut(s) 847
SaqAI TTAA 4 cut(s) 45, 243, 255, 468
SatI GCNGC 7 cut(s) 118, 121, 160, 318, 321, 384, 525
Sau3AI GATC 5 cut(s) 488, 505, 751, 786, 975
Sau96I GGNCC 4 cut(s) 443, 551, 628, 847
ScaI AGTACT 1 cut(s) 949
SchI GAGTC 3 cut(s) 804, 936, 980
ScrFI CCNGG 6 cut(s) 104, 105, 486, 626, 727, 775
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 2 cut(s) 268, 295
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 4 cut(s) 443, 551, 628, 847
SmaI CCCGGG 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 254, 964
SmoI CTYRAG 2 cut(s) 254, 964
Sse9I AATT 1 cut(s) 511
SsiI CCGC 8 cut(s) 159, 186, 198, 204, 336, 761, 845, 850
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 6 cut(s) 102, 103, 484, 624, 725, 773
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 4 cut(s) 497, 806, 875, 914
TaqI TCGA 3 cut(s) 813, 974, 978
TasI AATT 1 cut(s) 511
TatI WGTACW 2 cut(s) 6, 947
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 4 cut(s) 45, 243, 255, 468
Tru9I TTAA 4 cut(s) 45, 243, 255, 468
TscAI CASTG 3 cut(s) 119, 364, 593
TseFI GTSAC 4 cut(s) 209, 353, 693, 899
TseI GCWGC 6 cut(s) 117, 120, 317, 320, 383, 524
Tsp45I GTSAC 4 cut(s) 209, 353, 693, 899
TspDTI ATGAA 3 cut(s) 301, 423, 948
TspMI CCCGGG 1 cut(s) 103
TspRI CASTG 3 cut(s) 119, 364, 593
Tth111I GACNNNGTC 1 cut(s) 647
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 4 cut(s) 443, 551, 628, 847
XagI CCTNNNNNAGG 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 2 cut(s) 179, 185
XmaI CCCGGG 1 cut(s) 103
XspI CTAG 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 949
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.