Rmu_sc0005354.1_g000002

Oxidoreductase family, C-terminal alpha/beta domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005354.1
OG0014074
Physical Location & Seq
Reverse (-)
15209 .. 18340
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1239 bp
atggctgttgcttcaaacatagtcaagtatgggattgtaggggtgggtatgatgggtcgagagcacctcatcaatttgcaccatcttcgctcggaaggcgtggccgtggtagccatagctgacccccatgttccttcccaaaaactcgctttggacttggctcactctttcaattggcctctaaaggttttttcagggcataaggagctgttggatagtcttctctgtgatgtggtggttgtgtcaactccaaatatgacccatcatcatattctaatggatataattaaccaccccaaaccccaccatgtactggtggagaagccgttgtgtacaacagttgatcactgcaaagaggttattgaagccgctagaaagaggcaggatatgttggtgcaagttggactggagtatagatacatgccgcctgttgctaaactgataaacatagtaaagggtggaagtcttgggcaggtcaaaatggtggcaatccgagaacacaggtttcctttcttggttaaggtcaacaattggaaccggtttaatgttaactctggggggacactggtagagaagtgctgtcacttctttgatttgatgaggctgtttgctggagctaatccttttcgtgtgatggcttctggagccattgatgttaaccacaaagatgaaatatatgatgggaaggtaccagatataattgacaatgcatatgttattgtcgaatttgataatggtgctcgtgggatgcttgacctttgtatgtttgctgaagggagtaaaaatgagcaagaaatatcggtggttggtgatgtcggaaaggtaccagatataattgacaatgcatatgttattgtcgaatttgataatggtgctcgtgggatgcttgacctttgtatgtttgctgaagggagtaaaaatgagcaagaaatatcggtggttggtgatgtcggaaagggagaggcctttgttcctgagagtattgtacgtactggtactcgagtaggtgggagagatggtgtcaagactttaaaagctgagaatgatcagataaaatatgatgggctgcatcatggatctagctatttggaacacctgcacttcttatctgcaattagggctaaacaaggacctgctgttgatttgcatgatggattagtttcagttgccattggagttgcagcacaactttccatagagaaaggccggtttgttacaattgaagaagtcatgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA GFO_IDH_MocA_C

Protein Analysis

412

Amino Acids

45.3

Weight (kDa)

6.08

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFO_IDH_MocA PF01408 9 - 135 1.1e-26 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3 PF22725 145 - 274 5.9e-15 GFO/IDH/MocA C-terminal domain
GFO_IDH_MocA_C PF02894 151 - 275 4.3e-26 Oxidoreductase family, C-terminal alpha/beta domain
GFO_IDH_MocA_C PF02894 279 - 406 1.5e-20 Oxidoreductase family, C-terminal alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17370
fragaria_vesca FvH4_5g19170 FvH4_5g19170
malus_domestica MD04G1062400.v1.1
prunus_persica Prupe.5G066000_v2.0.a1 Prupe.5G066000_v2.0.a1 Prupe.5G066000_v2.0.a1
pyrus_communis pycom04g05590
rosa_chinensis RchiOBHm_Chr7g0203711
rosa_laevigata RLG00000003511
rosa_multiflora Rmu_sc0001714.1_g000005 Rmu_sc0005354.1_g000002
rosa_roxburghii Rroxscaffold_3G00253600
rosa_rugosa Rorug07G0078100.1
rosa_samantha Rh7BG207000 Rh7DG214900
rosa_wichuraiana Rw7G018120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1104
Acc36I ACCTGC 3 cut(s) 463, 1104, 1141
Acc65I GGTACC 2 cut(s) 688, 823
AccB1I GGYRCC 2 cut(s) 688, 823
AccB7I CCANNNNNTGG 1 cut(s) 313
AciI CCGC 2 cut(s) 369, 425
AclWI GGATC 1 cut(s) 1084
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 725, 860
AcuI CTGAAG 2 cut(s) 792, 927
AfaI GTAC 7 cut(s) 312, 334, 690, 825, 987, 991, 997
AfiI CCNNNNNNNGG 1 cut(s) 313
AgeI ACCGGT 1 cut(s) 537
AgsI TTSAA 4 cut(s) 15, 172, 365, 1223
AluBI AGCT 5 cut(s) 119, 208, 617, 1037, 1083
AluI AGCT 5 cut(s) 119, 208, 617, 1037, 1083
Alw21I GWGCWC 3 cut(s) 66, 742, 877
AlwI GGATC 1 cut(s) 1084
Ama87I CYCGRG 1 cut(s) 999
AoxI GGCC 4 cut(s) 102, 176, 963, 1204
ApeKI GCWGC 2 cut(s) 1066, 1181
ApoI RAATTY 2 cut(s) 725, 860
AsiGI ACCGGT 1 cut(s) 537
Asp718I GGTACC 2 cut(s) 688, 823
AspS9I GGNCC 1 cut(s) 1130
AsuHPI GGTGA 2 cut(s) 821, 956
AvaI CYCGRG 1 cut(s) 999
AvaII GGWCC 1 cut(s) 1130
BaeI ACNNNNGTAYC 2 cut(s) 987, 1020
BanI GGYRCC 2 cut(s) 688, 823
BauI CACGAG 2 cut(s) 741, 876
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 3 cut(s) 66, 742, 877
BbvI GCAGC 2 cut(s) 1053, 1193
BccI CCATC 8 cut(s) 46, 90, 270, 628, 674, 1010, 1055, 1145
BceAI ACGGC 2 cut(s) 89, 310
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BclI TGATCA 2 cut(s) 343, 1045
BfaI CTAG 2 cut(s) 372, 1080
BfuAI ACCTGC 3 cut(s) 463, 1104, 1141
BisI GCNGC 4 cut(s) 369, 425, 1067, 1182
BlsI GCNGC 4 cut(s) 370, 426, 1068, 1183
Bme18I GGWCC 1 cut(s) 1130
BmeT110I CYCGRG 1 cut(s) 999
BmgT120I GGNCC 1 cut(s) 1130
BmiI GGNNCC 4 cut(s) 536, 646, 690, 825
BmsI GCATC 3 cut(s) 738, 873, 1078
BpiI GAAGAC 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpmI CTGGAG 3 cut(s) 428, 633, 663
BsaAI YACGTR 1 cut(s) 989
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 537
BsaXI ACNNNNNCTCC 4 cut(s) 311, 341, 1003, 1033
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 2 cut(s) 537, 1206
Bse1I ACTGG 4 cut(s) 318, 411, 570, 997
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 753, 888
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 966, 1029
BseNI ACTGG 4 cut(s) 318, 411, 570, 997
BseXI GCAGC 2 cut(s) 1053, 1193
BsgI GTGCAG 1 cut(s) 1082
BshFI GGCC 4 cut(s) 104, 178, 965, 1206
BshNI GGYRCC 2 cut(s) 688, 823
BshTI ACCGGT 1 cut(s) 537
BsiHKAI GWGCWC 3 cut(s) 66, 742, 877
BsiHKCI CYCGRG 1 cut(s) 999
BsiSI CCGG 2 cut(s) 538, 1207
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 4 cut(s) 104, 178, 965, 1206
BsoBI CYCGRG 1 cut(s) 999
Bsp1286I GDGCHC 3 cut(s) 66, 742, 877
Bsp1407I TGTACA 1 cut(s) 332
Bsp143I GATC 3 cut(s) 343, 1045, 1076
BspACI CCGC 2 cut(s) 369, 425
BspANI GGCC 4 cut(s) 104, 178, 965, 1206
BspCNI CTCAG 2 cut(s) 967, 1030
BspHI TCATGA 1 cut(s) 1230
BspLI GGNNCC 4 cut(s) 536, 646, 690, 825
BspMI ACCTGC 3 cut(s) 463, 1104, 1141
BspPI GGATC 1 cut(s) 1084
BspT107I GGYRCC 2 cut(s) 688, 823
BsrFI RCCGGY 2 cut(s) 537, 1206
BsrGI TGTACA 1 cut(s) 332
BsrI ACTGG 4 cut(s) 318, 411, 570, 997
BssAI RCCGGY 2 cut(s) 537, 1206
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 3 cut(s) 343, 1045, 1076
BssSI CACGAG 2 cut(s) 741, 876
Bst2BI CACGAG 2 cut(s) 741, 876
Bst4CI ACNGT 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 332
BstBAI YACGTR 1 cut(s) 989
BstDEI CTNAG 2 cut(s) 975, 1038
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 753, 888
BstKTI GATC 3 cut(s) 346, 1048, 1079
BstMBI GATC 3 cut(s) 343, 1045, 1076
BstMWI GCNNNNNNNGC 5 cut(s) 96, 110, 205, 644, 1118
BstNSI RCATGY 1 cut(s) 424
BstSNI TACGTA 1 cut(s) 989
BstV1I GCAGC 2 cut(s) 1053, 1193
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 1076
BstYI RGATCY 1 cut(s) 1076
BsuRI GGCC 4 cut(s) 104, 178, 965, 1206
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 753, 888
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 346, 563
BveI ACCTGC 3 cut(s) 463, 1104, 1141
CciI TCATGA 1 cut(s) 1230
Cfr10I RCCGGY 2 cut(s) 537, 1206
Cfr13I GGNCC 1 cut(s) 1130
Csp6I GTAC 7 cut(s) 311, 333, 689, 824, 986, 990, 996
CspAI ACCGGT 1 cut(s) 537
CviAII CATG 6 cut(s) 128, 308, 421, 1073, 1148, 1231
CviQI GTAC 7 cut(s) 311, 333, 689, 824, 986, 990, 996
DdeI CTNAG 2 cut(s) 975, 1038
DpnI GATC 3 cut(s) 345, 1047, 1078
DpnII GATC 3 cut(s) 343, 1045, 1076
DraI TTTAAA 1 cut(s) 1032
EaeI YGGCCR 1 cut(s) 102
Eco105I TACGTA 1 cut(s) 989
Eco147I AGGCCT 1 cut(s) 965
Eco47I GGWCC 1 cut(s) 1130
Eco57I CTGAAG 2 cut(s) 792, 927
Eco88I CYCGRG 1 cut(s) 999
EcoO109I RGGNCCY 1 cut(s) 1130
EcoT22I ATGCAT 2 cut(s) 712, 847
FaeI CATG 6 cut(s) 131, 311, 424, 1076, 1151, 1234
FaqI GGGAC 1 cut(s) 574
FatI CATG 6 cut(s) 127, 307, 420, 1072, 1147, 1230
FauNDI CATATG 2 cut(s) 712, 847
FbaI TGATCA 2 cut(s) 343, 1045
Fnu4HI GCNGC 4 cut(s) 369, 425, 1067, 1182
FokI GGATG 2 cut(s) 760, 895
Fsp4HI GCNGC 4 cut(s) 369, 425, 1067, 1182
FspBI CTAG 2 cut(s) 372, 1080
GluI GCNGC 4 cut(s) 369, 425, 1067, 1182
GsuI CTGGAG 3 cut(s) 428, 633, 663
HaeIII GGCC 4 cut(s) 104, 178, 965, 1206
HapII CCGG 2 cut(s) 538, 1207
Hin1II CATG 6 cut(s) 131, 311, 424, 1076, 1151, 1234
HincII GTYRAC 4 cut(s) 246, 526, 550, 658
HindII GTYRAC 4 cut(s) 246, 526, 550, 658
HpaI GTTAAC 2 cut(s) 550, 658
HpaII CCGG 2 cut(s) 538, 1207
HphI GGTGA 2 cut(s) 821, 956
Hpy166II GTNNAC 5 cut(s) 246, 333, 526, 550, 658
Hpy188I TCNGA 5 cut(s) 94, 494, 818, 953, 1050
Hpy188III TCNNGA 5 cut(s) 59, 642, 974, 1024, 1231
Hpy8I GTNNAC 5 cut(s) 246, 333, 526, 550, 658
HpyAV CCTTC 5 cut(s) 89, 144, 679, 767, 902
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 988
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 110, 205, 644, 1118
HpyF3I CTNAG 2 cut(s) 975, 1038
HpySE526I ACGT 1 cut(s) 988
Hsp92II CATG 6 cut(s) 131, 311, 424, 1076, 1151, 1234
KpnI GGTACC 2 cut(s) 692, 827
Ksp22I TGATCA 2 cut(s) 343, 1045
KspAI GTTAAC 2 cut(s) 550, 658
Kzo9I GATC 3 cut(s) 343, 1045, 1076
LmnI GCTCC 3 cut(s) 205, 614, 644
Lsp1109I GCAGC 2 cut(s) 1053, 1193
LweI GCATC 3 cut(s) 738, 873, 1078
MaeI CTAG 2 cut(s) 372, 1080
MaeII ACGT 1 cut(s) 988
MaeIII GTNAC 2 cut(s) 581, 1213
MalI GATC 3 cut(s) 345, 1047, 1078
MboI GATC 3 cut(s) 343, 1045, 1076
MboII GAAGA 3 cut(s) 77, 212, 1235
MfeI CAATTG 3 cut(s) 172, 529, 1218
MflI RGATCY 1 cut(s) 1076
MhlI GDGCHC 3 cut(s) 66, 742, 877
MmeI TCCRAC 4 cut(s) 192, 382, 796, 931
MnlI CCTC 6 cut(s) 77, 189, 349, 372, 594, 955
Mph1103I ATGCAT 2 cut(s) 712, 847
MseI TTAA 6 cut(s) 288, 519, 543, 549, 657, 1031
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 2 cut(s) 538, 1207
MunI CAATTG 3 cut(s) 172, 529, 1218
MwoI GCNNNNNNNGC 5 cut(s) 96, 110, 205, 644, 1118
NdeI CATATG 2 cut(s) 712, 847
NdeII GATC 3 cut(s) 343, 1045, 1076
NlaIII CATG 6 cut(s) 131, 311, 424, 1076, 1151, 1234
NlaIV GGNNCC 4 cut(s) 536, 646, 690, 825
NmuCI GTSAC 1 cut(s) 581
NsiI ATGCAT 2 cut(s) 712, 847
NspI RCATGY 1 cut(s) 424
PaeR7I CTCGAG 1 cut(s) 999
PagI TCATGA 1 cut(s) 1230
PaqCI CACCTGC 1 cut(s) 1104
PceI AGGCCT 1 cut(s) 965
PflMI CCANNNNNTGG 1 cut(s) 313
PinAI ACCGGT 1 cut(s) 537
PkrI GCNGC 4 cut(s) 370, 426, 1068, 1183
Ppu21I YACGTR 1 cut(s) 989
PpuMI RGGWCCY 1 cut(s) 1130
Psp5II RGGWCCY 1 cut(s) 1130
PspN4I GGNNCC 4 cut(s) 536, 646, 690, 825
PspPI GGNCC 1 cut(s) 1130
PspPPI RGGWCCY 1 cut(s) 1130
PspXI VCTCGAGB 1 cut(s) 999
PsuI RGATCY 1 cut(s) 1076
RsaI GTAC 7 cut(s) 312, 334, 690, 825, 987, 991, 997
RsaNI GTAC 7 cut(s) 311, 333, 689, 824, 986, 990, 996
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 6 cut(s) 288, 519, 543, 549, 657, 1031
SatI GCNGC 4 cut(s) 369, 425, 1067, 1182
Sau3AI GATC 3 cut(s) 343, 1045, 1076
Sau96I GGNCC 1 cut(s) 1130
SduI GDGCHC 3 cut(s) 66, 742, 877
SfaNI GCATC 3 cut(s) 738, 873, 1078
Sfr274I CTCGAG 1 cut(s) 999
SinI GGWCC 1 cut(s) 1130
SlaI CTCGAG 1 cut(s) 999
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 999
SmoI CTYRAG 1 cut(s) 999
SnaBI TACGTA 1 cut(s) 989
SseBI AGGCCT 1 cut(s) 965
SsiI CCGC 2 cut(s) 369, 425
SspMI CTAG 2 cut(s) 372, 1080
StuI AGGCCT 1 cut(s) 965
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 991
TaqI TCGA 4 cut(s) 58, 723, 858, 1000
TatI WGTACW 2 cut(s) 310, 332
TauI GCSGC 2 cut(s) 371, 427
Tru1I TTAA 6 cut(s) 288, 519, 543, 549, 657, 1031
Tru9I TTAA 6 cut(s) 288, 519, 543, 549, 657, 1031
TscAI CASTG 2 cut(s) 353, 570
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 2 cut(s) 1066, 1181
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 1 cut(s) 684
TspRI CASTG 2 cut(s) 353, 570
Van91I CCANNNNNTGG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 1130
XapI RAATTY 2 cut(s) 725, 860
XceI RCATGY 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 999
XspI CTAG 2 cut(s) 372, 1080
Zsp2I ATGCAT 2 cut(s) 712, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.