Rmu_sc0005450.1_g000001

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005450.1
OG0019413
Physical Location & Seq
Reverse (-)
1 .. 5047
5047 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1386 bp
atgatgcgtggggtggtacaggaactccagatagttttgatgatggtggggagggtggaagcggaacaggtagtggaggtgaaagatatgaatatggacaatcttctgtggatggaggattccaatttacctgtgaaagtaattttgatcatgccacccaagatcaagaccacgaactgctttattttcccacaccgcttccgaagttcaaaactaaaacaagttctaatctttctcatatttggtgattccattggttggatttcttctgcaacagtcatagacacggtgtattgcaggttcgatatgtctcaagattcagggttgagagcgccgtgtcacagttcagaaacaatgaatattagaatgctgcaaaccaatgcacgtggctaccttgaaaaggcattgtcggagcaggaaaaggcattcctagagcaggatgaagccttgttaagatccgaagctcagaagaaagatttgaagaaacagcttgaggagagtgaagctcagaacaaagtgcttaagaaacagcttgagcagaatgttgctcagaataaagtgcttgaacagcgtgagaagcaactacaacgatggaataacagcattatgttggagaagaagaaggcagatgaaaaggtgttactgctttcagaagaacataagagagaaaagaatgaattgtttagaacaatcattgaattggaaaagcagcttgacgtcaaaagtacattggtgctagagattgagcgtataagaggtgctttattgttaatcaaacaaatgcatgaagatggggatttgcaagggcgaaataagatgaataagtttcaggaactgttaaagaagaaggaagaggacttgaccatggtagaacttattgtcaaggagtggatatgtaatgatgaaattcaggaagctcagaaggagttgatcattggactgtgggattcatcaaaccaggcatttattcatgtggagagagtgggagttgacatcaatccatttcagactgcaaccagcagaaattttttcgaagaagcaaatattgaattgttggagttgtggtctttatgggccgagtatactagggacgagagctggcacccattcaaggttattgtggataaagtaggaaatgcaaaggaaattattgatgagaaggatgccacattgaaatttataatgaacgagtttgatgaagaattttacaagtttgtcacaactgccttggtcaaagtgaacgagaatgagaacaagaatgatcccagttataatcatataagacccgtgatgtggaactgtaagacagggaggagggctacagttagagatgtatatatgaaagcggtggattggtggaacaaagcaaaaagtgagaagaatatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH

Protein Analysis

462

Amino Acids

54.31

Weight (kDa)

5.69

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 330 - 457 2.8e-24 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019413)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0065241
rosa_laevigata RLG00000035770
rosa_multiflora Rmu_sc0005450.1_g000001
rosa_roxburghii Rroxscaffold_1G00016070
rosa_rugosa Rorug05G0369700
rosa_samantha Rh5AG428000 Rh5CG465700
rosa_wichuraiana Rw5G040170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1181, 1272
AatII GACGTC 1 cut(s) 720
Acc36I ACCTGC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 1101
AccB7I CCANNNNNTGG 1 cut(s) 258
AccI GTMKAC 1 cut(s) 1082
AciI CCGC 3 cut(s) 62, 196, 1346
AclWI GGATC 2 cut(s) 450, 1256
AcsI RAATTY 4 cut(s) 906, 1024, 1175, 1202
AcvI CACGTG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 717
AfaI GTAC 2 cut(s) 18, 727
AfiI CCNNNNNNNGG 5 cut(s) 258, 400, 436, 1111, 1293
AflII CTTAAG 1 cut(s) 521
AgsI TTSAA 8 cut(s) 210, 398, 481, 566, 698, 1049, 1111, 1174
AjnI CCWGG 1 cut(s) 957
AluBI AGCT 7 cut(s) 464, 490, 506, 532, 712, 917, 1098
AluI AGCT 7 cut(s) 464, 490, 506, 532, 712, 917, 1098
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 2 cut(s) 450, 1256
AlwNI CAGNNNCTG 1 cut(s) 835
AoxI GGCC 1 cut(s) 1074
ApeKI GCWGC 2 cut(s) 370, 709
ApoI RAATTY 4 cut(s) 906, 1024, 1175, 1202
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 1074
AsuHPI GGTGA 2 cut(s) 91, 257
AsuII TTCGAA 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 1101
BbrPI CACGTG 1 cut(s) 386
BbvI GCAGC 2 cut(s) 357, 721
BccI CCATC 4 cut(s) 37, 106, 585, 785
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 959
BclI TGATCA 2 cut(s) 147, 930
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 3 cut(s) 431, 737, 1086
BfmI CTRYAG 1 cut(s) 1320
BfoI RGCGCY 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 2 cut(s) 371, 710
BlsI GCNGC 2 cut(s) 372, 711
Bme1390I CCNGG 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 1074
BmiI GGNNCC 1 cut(s) 1103
BmrFI CCNGG 1 cut(s) 959
BmrI ACTGGG 1 cut(s) 1260
BmsI GCATC 1 cut(s) 1153
BmuI ACTGGG 1 cut(s) 1260
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BpmI CTGGAG 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 1032
BpuEI CTTGAG 3 cut(s) 297, 512, 554
BsaAI YACGTR 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 717
BsaJI CCNNGG 2 cut(s) 864, 1227
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 1049, 1079
Bsc4I CCNNNNNNNGG 5 cut(s) 258, 400, 436, 1111, 1293
Bse1I ACTGG 1 cut(s) 1266
BseBI CCWGG 1 cut(s) 959
BseDI CCNNGG 2 cut(s) 864, 1227
BseGI GGATG 3 cut(s) 117, 445, 1168
BseLI CCNNNNNNNGG 5 cut(s) 258, 400, 436, 1111, 1293
BseMII CTCAG 4 cut(s) 479, 521, 563, 932
BseNI ACTGG 1 cut(s) 1266
BseRI GAGGAG 2 cut(s) 509, 1327
BseXI GCAGC 2 cut(s) 357, 721
BshFI GGCC 1 cut(s) 1076
BshNI GGYRCC 1 cut(s) 1101
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 5 cut(s) 258, 400, 436, 1111, 1293
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 1103
BsmI GAATGC 2 cut(s) 372, 425
BsnI GGCC 1 cut(s) 1076
Bsp119I TTCGAA 1 cut(s) 1032
Bsp143I GATC 5 cut(s) 147, 162, 455, 930, 1261
Bsp19I CCATGG 1 cut(s) 864
BspACI CCGC 3 cut(s) 62, 196, 1346
BspANI GGCC 1 cut(s) 1076
BspCNI CTCAG 4 cut(s) 478, 520, 562, 931
BspLI GGNNCC 1 cut(s) 1103
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 2 cut(s) 450, 1256
BspT104I TTCGAA 1 cut(s) 1032
BspT107I GGYRCC 1 cut(s) 1101
BspTI CTTAAG 1 cut(s) 521
BsrI ACTGG 1 cut(s) 1266
BssECI CCNNGG 2 cut(s) 864, 1227
BssMI GATC 5 cut(s) 147, 162, 455, 930, 1261
BssNAI GTATAC 1 cut(s) 1083
BssNI GRCGYC 1 cut(s) 717
BssT1I CCWWGG 2 cut(s) 864, 1227
Bst1107I GTATAC 1 cut(s) 1083
Bst2UI CCWGG 1 cut(s) 959
Bst4CI ACNGT 7 cut(s) 277, 289, 344, 837, 942, 1301, 1324
Bst6I CTCTTC 1 cut(s) 846
BstACI GRCGYC 1 cut(s) 717
BstAFI CTTAAG 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 386
BstBI TTCGAA 1 cut(s) 1032
BstC8I GCNNGC 1 cut(s) 1100
BstDEI CTNAG 4 cut(s) 465, 507, 549, 918
BstDSI CCRYGG 1 cut(s) 864
BstENI CCTNNNNNAGG 2 cut(s) 398, 434
BstF5I GGATG 3 cut(s) 117, 445, 1168
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 5 cut(s) 150, 165, 458, 933, 1264
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 5 cut(s) 147, 162, 455, 930, 1261
BstMWI GCNNNNNNNGC 2 cut(s) 568, 577
BstNI CCWGG 1 cut(s) 959
BstSCI CCNGG 1 cut(s) 957
BstSFI CTRYAG 1 cut(s) 1320
BstV1I GCAGC 2 cut(s) 357, 721
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BstZ17I GTATAC 1 cut(s) 1083
BsuRI GGCC 1 cut(s) 1076
BtgI CCRYGG 1 cut(s) 864
BtsCI GGATG 3 cut(s) 117, 445, 1168
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 1100
CaiI CAGNNNCTG 1 cut(s) 835
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 1074
Csp6I GTAC 2 cut(s) 17, 726
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviAII CATG 4 cut(s) 151, 785, 865, 971
CviQI GTAC 2 cut(s) 17, 726
DdeI CTNAG 4 cut(s) 465, 507, 549, 918
DpnI GATC 5 cut(s) 149, 164, 457, 932, 1263
DpnII GATC 5 cut(s) 147, 162, 455, 930, 1261
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Eco130I CCWWGG 2 cut(s) 864, 1227
Eco72I CACGTG 1 cut(s) 386
EcoNI CCTNNNNNAGG 2 cut(s) 398, 434
EcoRII CCWGG 1 cut(s) 957
EcoT14I CCWWGG 2 cut(s) 864, 1227
EcoT22I ATGCAT 1 cut(s) 786
ErhI CCWWGG 2 cut(s) 864, 1227
FaeI CATG 4 cut(s) 154, 788, 868, 974
FalI AAGNNNNNCTT 2 cut(s) 745, 777
FaqI GGGAC 1 cut(s) 1103
FatI CATG 4 cut(s) 150, 784, 864, 970
FbaI TGATCA 2 cut(s) 147, 930
FblI GTMKAC 1 cut(s) 1082
Fnu4HI GCNGC 2 cut(s) 371, 710
FokI GGATG 3 cut(s) 124, 452, 1175
Fsp4HI GCNGC 2 cut(s) 371, 710
FspBI CTAG 3 cut(s) 431, 737, 1086
GlaI GCGC 1 cut(s) 333
GluI GCNGC 2 cut(s) 371, 710
GsuI CTGGAG 1 cut(s) 11
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 1 cut(s) 1076
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 717
Hin1II CATG 4 cut(s) 154, 788, 868, 974
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HinfI GANTC 4 cut(s) 119, 248, 317, 947
HphI GGTGA 2 cut(s) 91, 257
Hpy166II GTNNAC 3 cut(s) 991, 1083, 1240
Hpy188III TCNNGA 5 cut(s) 28, 166, 314, 830, 911
Hpy8I GTNNAC 3 cut(s) 991, 1083, 1240
HpyAV CCTTC 4 cut(s) 616, 841, 916, 1153
HpyCH4III ACNGT 7 cut(s) 277, 289, 344, 837, 942, 1301, 1324
HpyCH4IV ACGT 2 cut(s) 385, 717
HpyCH4V TGCA 8 cut(s) 272, 297, 373, 383, 784, 802, 1013, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 568, 577
HpyF3I CTNAG 4 cut(s) 465, 507, 549, 918
HpySE526I ACGT 2 cut(s) 385, 717
Hsp92I GRCGYC 1 cut(s) 717
Hsp92II CATG 4 cut(s) 154, 788, 868, 974
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 2 cut(s) 147, 930
Kzo9I GATC 5 cut(s) 147, 162, 455, 930, 1261
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 2 cut(s) 357, 721
LweI GCATC 1 cut(s) 1153
MaeI CTAG 3 cut(s) 431, 737, 1086
MaeII ACGT 2 cut(s) 385, 717
MaeIII GTNAC 3 cut(s) 338, 639, 1216
MalI GATC 5 cut(s) 149, 164, 457, 932, 1263
MboI GATC 5 cut(s) 147, 162, 455, 930, 1261
MflI RGATCY 1 cut(s) 455
MmeI TCCRAC 4 cut(s) 239, 390, 591, 1035
MnlI CCTC 8 cut(s) 45, 70, 109, 487, 749, 847, 1305, 1308
Mph1103I ATGCAT 1 cut(s) 786
MseI TTAA 4 cut(s) 452, 522, 770, 839
MslI CAYNNNNRTG 1 cut(s) 789
MspCI CTTAAG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 959
Mva1269I GAATGC 2 cut(s) 372, 425
MvaI CCWGG 1 cut(s) 959
MwoI GCNNNNNNNGC 2 cut(s) 568, 577
NcoI CCATGG 1 cut(s) 864
NdeII GATC 5 cut(s) 147, 162, 455, 930, 1261
NlaIII CATG 4 cut(s) 154, 788, 868, 974
NlaIV GGNNCC 1 cut(s) 1103
NmeAIII GCCGAG 1 cut(s) 1102
NmuCI GTSAC 2 cut(s) 338, 1216
NsiI ATGCAT 1 cut(s) 786
NspV TTCGAA 1 cut(s) 1032
PctI GAATGC 2 cut(s) 372, 425
PfeI GAWTC 4 cut(s) 119, 248, 317, 947
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 2 cut(s) 372, 711
PmaCI CACGTG 1 cut(s) 386
PmlI CACGTG 1 cut(s) 386
Ppu21I YACGTR 1 cut(s) 386
PsiI TTATAA 2 cut(s) 1181, 1272
Psp6I CCWGG 1 cut(s) 957
PspCI CACGTG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 957
PspN4I GGNNCC 1 cut(s) 1103
PspPI GGNCC 1 cut(s) 1074
PsrI GAACNNNNNNTAC 2 cut(s) 284, 316
PstNI CAGNNNCTG 1 cut(s) 835
PsuI RGATCY 1 cut(s) 455
RsaI GTAC 2 cut(s) 18, 727
RsaNI GTAC 2 cut(s) 17, 726
RseI CAYNNNNRTG 1 cut(s) 789
SaqAI TTAA 4 cut(s) 452, 522, 770, 839
SatI GCNGC 2 cut(s) 371, 710
Sau3AI GATC 5 cut(s) 147, 162, 455, 930, 1261
Sau96I GGNCC 1 cut(s) 1074
ScrFI CCNGG 1 cut(s) 959
SfaNI GCATC 1 cut(s) 1153
SfcI CTRYAG 1 cut(s) 1320
SfuI TTCGAA 1 cut(s) 1032
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 4 cut(s) 312, 491, 521, 533
SmoI CTYRAG 4 cut(s) 312, 491, 521, 533
SsiI CCGC 3 cut(s) 62, 196, 1346
SspI AATATT 2 cut(s) 361, 1045
SspMI CTAG 3 cut(s) 431, 737, 1086
StyD4I CCNGG 1 cut(s) 957
StyI CCWWGG 2 cut(s) 864, 1227
TaaI ACNGT 7 cut(s) 277, 289, 344, 837, 942, 1301, 1324
TaiI ACGT 2 cut(s) 388, 720
TaqI TCGA 2 cut(s) 303, 1032
TatI WGTACW 1 cut(s) 725
TfiI GAWTC 4 cut(s) 119, 248, 317, 947
Tru1I TTAA 4 cut(s) 452, 522, 770, 839
Tru9I TTAA 4 cut(s) 452, 522, 770, 839
TseFI GTSAC 2 cut(s) 338, 1216
TseI GCWGC 2 cut(s) 370, 709
Tsp45I GTSAC 2 cut(s) 338, 1216
Van91I CCANNNNNTGG 1 cut(s) 258
Vha464I CTTAAG 1 cut(s) 521
XagI CCTNNNNNAGG 2 cut(s) 398, 434
XapI RAATTY 4 cut(s) 906, 1024, 1175, 1202
XmiI GTMKAC 1 cut(s) 1082
XspI CTAG 3 cut(s) 431, 737, 1086
ZraI GACGTC 1 cut(s) 718
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.