Rmu_sc0005450.1_g000010

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005450.1
Physical Location & Seq
Reverse (-)
41851 .. 42548
698 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
atgggttcctcaacatatatctctacaattataggtcaggctactatggttaaagtggagaacccagaagcaaatcagcttcctgaagtggattcattaccagttggatttgttgacagctccacaaagccactggctcctccaactcccacctttgaacaagagaagcctccgggcaatcacgaagatgataatgcctcggagatggatcgttcgaaggagcttgtggatgaattgggtgcaaatgagttgcaaacgagcctggataagggagagaagacacccaaactacaatcagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

10.81

Weight (kDa)

4.32

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020638)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007451
rosa_multiflora Rmu_sc0005450.1_g000010
rosa_samantha Rh1DG402600 Rh4CG280000 Rh5DG455800 Rh7CG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 3 cut(s) 79, 120, 223
AluI AGCT 3 cut(s) 79, 120, 223
AlwI GGATC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 174
AsuII TTCGAA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 284
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 174
Bme1390I CCNGG 2 cut(s) 174, 263
BmiI GGNNCC 2 cut(s) 7, 138
BmrFI CCNGG 2 cut(s) 174, 263
BpiI GAAGAC 1 cut(s) 284
Bpu14I TTCGAA 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 101, 138
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 101, 138
BseRI GAGGAG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 7, 138
BspPI GGATC 1 cut(s) 216
BspT104I TTCGAA 1 cut(s) 215
BsrI ACTGG 2 cut(s) 101, 138
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 172, 261
BstV2I GAAGAC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 131
CviJI RGCY 8 cut(s) 41, 79, 120, 130, 137, 169, 223, 261
CviKI_1 RGCY 8 cut(s) 41, 79, 120, 130, 137, 169, 223, 261
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 261
FaiI YATR 4 cut(s) 16, 18, 32, 47
FokI GGATG 1 cut(s) 242
HapII CCGG 1 cut(s) 173
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 202, 298
Hpy188III TCNNGA 2 cut(s) 83, 182
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 242, 253
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 3 cut(s) 125, 142, 220
LpnPI CCDG 8 cut(s) 23, 78, 96, 114, 119, 186, 248, 275
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 197, 289
MluCI AATT 2 cut(s) 27, 233
MmeI TCCRAC 2 cut(s) 85, 167
MnlI CCTC 4 cut(s) 19, 150, 180, 208
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 174, 263
MvaI CCWGG 1 cut(s) 263
NciI CCSGG 1 cut(s) 174
NdeII GATC 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 7, 138
NspV TTCGAA 1 cut(s) 215
PfeI GAWTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 7, 138
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 174, 263
SetI ASST 5 cut(s) 37, 81, 122, 155, 225
SfuI TTCGAA 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 2 cut(s) 27, 233
StyD4I CCNGG 2 cut(s) 172, 261
TaqI TCGA 1 cut(s) 215
TasI AATT 2 cut(s) 27, 233
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 84, 246
TspRI CASTG 1 cut(s) 138
XagI CCTNNNNNAGG 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.