Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005509.1

Orthogroup ID

OG0008207

Physical Location & Seq

Genomic Coordinates Reverse (-)

648 .. 1232

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005509.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgtttgccctggtgtttttatggttcgggatctcagtcccacttgtatttgttggggcctatgttgggttcaagaagccagcactagaggatcccgttaagacaaacaaaatcccaaggcagatcccagaacaggcttggtacatgaacccagtgttctcaattctaataggaggaatcctcccatttggagcagttttcattgaactgttcttcatcctgacctcaatatggttgaaccagttctactacatctttggtttcctcttcttggtcttcatcatcctcattgtcacttgtgctgagataaccatcgtgctttgctacttccagctgtgcagtgaggattacttgtggtggtggagatcgtacctcacatcaggctcatcagccctgtacctcttcctgtatgctactttctacttcttcacaaagcttgaaatcacaaagctggtctctgggatgttatacttcggatacatgcttattgcttcgtacgcattctttgtggtgactggtaccattgggttctatgcatgcttttggttcacgagactcatctactcatctgtgaaaattgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006810 GO:0006873 GO:0006885 GO:0006897 GO:0006909 GO:0006950 GO:0007155 GO:0008150 GO:0009505 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0019725 GO:0022607 GO:0022610 GO:0030003 GO:0030004 GO:0030312 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033157 GO:0034622 GO:0036293 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0070201 GO:0070482 GO:0070861 GO:0070863 GO:0071840 GO:0071944 GO:0090087 GO:0090316 GO:0097708 GO:0098588 GO:0098657 GO:0098771 GO:0098791 GO:0098805 GO:1903827 GO:1903829 GO:1904951 GO:2000008 GO:2000010

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

194

Amino Acids

22.64

Weight (kDa)

7.56

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10840 AT5G25100 AT5G25100
fragaria_vesca	FvH4_2g41140
malus_domestica	MD08G1056300.v1.1 MD08G1056400.v1.1 MD08G1056900.v1.1 MD15G1040700.v1.1
prunus_persica	Prupe.1G393900_v2.0.a1
pyrus_communis	pycom08g04620 pycom08g04630 pycom15g03800
rosa_chinensis	RchiOBHm_Chr6g0299401
rosa_multiflora	Rmu_sc0000861.1_g000066 Rmu_sc0005509.1_g000001 Rmu_sc0013965.1_g000004 Rmu_sc0017526.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168720
rosa_rugosa	Rorug06G0287800
rosa_samantha	Rh6BG407900 Rh6CG413700 Rh6DG400700
rosa_wichuraiana	Rw6G034980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	518
AclWI	GGATC	4 cut(s)	38, 86, 99, 118
AfaI	GTAC	5 cut(s)	143, 371, 398, 497, 520
AfiI	CCNNNNNNNGG	4 cut(s)	66, 133, 231, 271
AgsI	TTSAA	4 cut(s)	73, 206, 238, 440
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	334, 436, 451
AluI	AGCT	3 cut(s)	334, 436, 451
Alw26I	GTCTC	2 cut(s)	460, 547
AlwI	GGATC	4 cut(s)	38, 86, 99, 118
AoxI	GGCC	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	523
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	518
BauI	CACGAG	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	268
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	11
BciVI	GTATCC	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	460, 547
BfaI	CTAG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	3 cut(s)	58, 93, 520
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	268
BplI	GAGNNNNNCTC	2 cut(s)	165, 197
BsaBI	GATNNNNATC	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	2 cut(s)	9, 116
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 133, 231, 271
Bse1I	ACTGG	3 cut(s)	152, 241, 520
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	9, 116
BseGI	GGATG	3 cut(s)	216, 282, 468
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	4 cut(s)	66, 133, 231, 271
BseMII	CTCAG	2 cut(s)	48, 294
BseNI	ACTGG	3 cut(s)	152, 241, 520
BsgI	GTGCAG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	518
BsiWI	CGTACG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	4 cut(s)	66, 133, 231, 271
BsmAI	GTCTC	2 cut(s)	460, 547
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	30, 91, 123, 365
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	47, 295
BspLI	GGNNCC	3 cut(s)	58, 93, 520
BspPI	GGATC	4 cut(s)	38, 86, 99, 118
BspT107I	GGYRCC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	152, 241, 520
BssECI	CCNNGG	2 cut(s)	9, 116
BssMI	GATC	4 cut(s)	30, 91, 123, 365
BssSI	CACGAG	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	2 cut(s)	272, 407
BstC8I	GCNNGC	2 cut(s)	81, 538
BstDEI	CTNAG	2 cut(s)	34, 303
BstF5I	GGATG	3 cut(s)	216, 282, 468
BstKTI	GATC	4 cut(s)	33, 94, 126, 368
BstMAI	GTCTC	2 cut(s)	460, 547
BstMBI	GATC	4 cut(s)	30, 91, 123, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	484, 540
BstSCI	CCNGG	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	3 cut(s)	30, 91, 123
BstYI	RGATCY	3 cut(s)	30, 91, 123
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	216, 282, 468
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	159, 346
Cac8I	GCNNGC	2 cut(s)	81, 538
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	5 cut(s)	142, 370, 397, 496, 519
CviAII	CATG	3 cut(s)	145, 481, 537
CviJI	RGCY	8 cut(s)	59, 79, 137, 334, 384, 392, 436, 451
CviKI_1	RGCY	8 cut(s)	59, 79, 137, 334, 384, 392, 436, 451
CviQI	GTAC	5 cut(s)	142, 370, 397, 496, 519
DdeI	CTNAG	2 cut(s)	34, 303
DpnI	GATC	4 cut(s)	32, 93, 125, 367
DpnII	GATC	4 cut(s)	30, 91, 123, 365
Eam1104I	CTCTTC	2 cut(s)	272, 407
EarI	CTCTTC	2 cut(s)	272, 407
Eco130I	CCWWGG	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	3 cut(s)	148, 484, 540
FaiI	YATR	9 cut(s)	22, 63, 146, 232, 411, 469, 482, 534, 538
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	144, 480, 536
FokI	GGATG	3 cut(s)	203, 269, 475
FspBI	CTAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	148, 484, 540
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	177, 555
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	1 cut(s)	476
Hpy188III	TCNNGA	4 cut(s)	28, 73, 220, 550
Hpy8I	GTNNAC	1 cut(s)	549
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	339, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	34, 303
Hsp92II	CATG	3 cut(s)	148, 484, 540
KpnI	GGTACC	1 cut(s)	522
Kzo9I	GATC	4 cut(s)	30, 91, 123, 365
LmnI	GCTCC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	292, 511
MalI	GATC	4 cut(s)	32, 93, 125, 367
MboI	GATC	4 cut(s)	30, 91, 123, 365
MboII	GAAGA	5 cut(s)	205, 259, 268, 394, 418
MflI	RGATCY	3 cut(s)	30, 91, 123
MluCI	AATT	2 cut(s)	162, 576
MlyI	GAGTC	1 cut(s)	549
MnlI	CCTC	9 cut(s)	82, 167, 191, 235, 275, 296, 337, 383, 410
Mph1103I	ATGCAT	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	4 cut(s)	30, 91, 123, 365
NlaIII	CATG	3 cut(s)	148, 484, 540
NlaIV	GGNNCC	3 cut(s)	58, 93, 520
NmuCI	GTSAC	2 cut(s)	292, 511
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	2 cut(s)	484, 540
PaeI	GCATGC	1 cut(s)	540
PctI	GAATGC	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	177
Pfl23II	CGTACG	1 cut(s)	495
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspLI	CGTACG	1 cut(s)	495
PspN4I	GGNNCC	3 cut(s)	58, 93, 520
PspPI	GGNCC	1 cut(s)	57
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PsuI	RGATCY	3 cut(s)	30, 91, 123
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	5 cut(s)	143, 371, 398, 497, 520
RsaNI	GTAC	5 cut(s)	142, 370, 397, 496, 519
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	30, 91, 123, 365
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	549
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	6 cut(s)	227, 336, 375, 402, 438, 453
SphI	GCATGC	1 cut(s)	540
Sse9I	AATT	2 cut(s)	162, 576
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	210
TasI	AATT	2 cut(s)	162, 576
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	159, 346
TseFI	GTSAC	2 cut(s)	292, 511
Tsp45I	GTSAC	2 cut(s)	292, 511
TspDTI	ATGAA	4 cut(s)	161, 190, 205, 268
TspRI	CASTG	2 cut(s)	159, 346
XceI	RCATGY	2 cut(s)	484, 540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.