Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008207

Physical Location & Seq

Genomic Coordinates Reverse (-)

43765798 .. 43768073

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTACTCAGTGTGGTGTCTGCAATGTATATTCTAATAAATTGAGCTACTATACATATTGGGAGGAATCTGTGTGTCGTGAACATGCCTCTGATGGGACTCTCAGGTGTTATACCTGTCATAGATTTAAGAAAGCTCAGGACCCAGAATATTTGGACCTTAATGATAATGGCAGAAAACTTTGCTCATATTGTTCTAGCATTGCTACCTTGGATCCAAAGGAATGCATGCCCCTTATTCAAAATGTGCGTGAATTTTATAGAAGTTTAAACCTCGTGGTGGATGAAACCATTCCTTTTTTGTTGGTCGACAAGGATATGATGCTCAAATTCATACCAGCCTGTGCAGGCAAAGATACGATTGGTACCATATGGTACAAGGATAGCAGTTTGCGTGCTTGCACAACGATTAAGAAATGTTCAACAAGTGAAGGAATTATTAAGGTGGAGAAAAACACAGAGAGGCTAACCCGACGTTGCAATTTATTAACCATGCGACGGAAAAGTTCAGTACGGGCATTGATAATTTTGTTCGGTACACCGGGAGTCTGCATAGGTGAAACAATGGCACATGAGATGATGCATGCATGGTTTTACCTTCAAGGTTGTAGAGGGAAATTGGAAAGAAGTGTTGAAGAAGGTATTTGCAGATTAATGGGATACATGTGGATGGAGTGGTTTTGTTCTGGTGGTGTTGACTCCTTTTACAAAACCAGTGTACAAGTTCAATATACAAAAGACTTGAAAGATTATATAGCGCATTGGATGGAACTTAGTCAAGACAAAAGTTATGGCCAAGGATTTAGAGATGCTATCAAGGCTGTTAGCAAGTTTGGCTTCAACTATACAGTGGACTATATCGTCAAGAACAAATGCCTCCCTTGTGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006810 GO:0006873 GO:0006885 GO:0006897 GO:0006909 GO:0006950 GO:0007155 GO:0008150 GO:0009505 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0019725 GO:0022607 GO:0022610 GO:0030003 GO:0030004 GO:0030312 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033157 GO:0034622 GO:0036293 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0070201 GO:0070482 GO:0070861 GO:0070863 GO:0071840 GO:0071944 GO:0090087 GO:0090316 GO:0097708 GO:0098588 GO:0098657 GO:0098771 GO:0098791 GO:0098805 GO:1903827 GO:1903829 GO:1904951 GO:2000008 GO:2000010

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

297

Amino Acids

34.28

Weight (kDa)

8.45

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DA1-like	PF12315	90 - 288	1e-32	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10840 AT5G25100 AT5G25100
fragaria_vesca	FvH4_2g41140
malus_domestica	MD08G1056300.v1.1 MD08G1056400.v1.1 MD08G1056900.v1.1 MD15G1040700.v1.1
prunus_persica	Prupe.1G393900_v2.0.a1
pyrus_communis	pycom08g04620 pycom08g04630 pycom15g03800
rosa_chinensis	RchiOBHm_Chr6g0299401
rosa_multiflora	Rmu_sc0000861.1_g000066 Rmu_sc0005509.1_g000001 Rmu_sc0013965.1_g000004 Rmu_sc0017526.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168720
rosa_rugosa	Rorug06G0287800
rosa_samantha	Rh6BG407900 Rh6CG413700 Rh6DG400700
rosa_wichuraiana	Rw6G034980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	860
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	309
AclWI	GGATC	2 cut(s)	209, 222
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	3 cut(s)	254, 329, 888
AfaI	GTAC	5 cut(s)	367, 377, 513, 538, 720
AfiI	CCNNNNNNNGG	3 cut(s)	96, 280, 498
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	7 cut(s)	242, 423, 602, 635, 728, 745, 841
AluBI	AGCT	2 cut(s)	48, 137
AluI	AGCT	2 cut(s)	48, 137
AlwI	GGATC	2 cut(s)	209, 222
AoxI	GGCC	1 cut(s)	793
ApoI	RAATTY	3 cut(s)	254, 329, 888
AseI	ATTAAT	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	291
Asp718I	GGTACC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	760
AspS9I	GGNCC	2 cut(s)	142, 157
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	142, 157
BalI	TGGCCA	1 cut(s)	795
BamHI	GGATCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	275
BccI	CCATC	3 cut(s)	89, 664, 760
BciVI	GTATCC	1 cut(s)	653
BcnI	CCSGG	1 cut(s)	543
BfaI	CTAG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	653
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	2 cut(s)	142, 157
BmgT120I	GGNCC	2 cut(s)	142, 157
BmiI	GGNNCC	3 cut(s)	144, 216, 367
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	3 cut(s)	312, 570, 799
Bpu10I	CCTNAGC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	210, 796
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 280, 498
Bse1I	ACTGG	1 cut(s)	714
Bse3DI	GCAATG	2 cut(s)	31, 201
BseDI	CCNNGG	2 cut(s)	210, 796
BseGI	GGATG	3 cut(s)	289, 675, 771
BseLI	CCNNNNNNNGG	3 cut(s)	96, 280, 498
BseMI	GCAATG	2 cut(s)	31, 201
BseMII	CTCAG	3 cut(s)	23, 118, 152
BseNI	ACTGG	1 cut(s)	714
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	795
BshNI	GGYRCC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	96, 280, 498
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	795
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	3 cut(s)	22, 117, 151
BspLI	GGNNCC	3 cut(s)	144, 216, 367
BspPI	GGATC	2 cut(s)	209, 222
BspT107I	GGYRCC	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	31, 201
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	714
BssECI	CCNNGG	2 cut(s)	210, 796
BssMI	GATC	1 cut(s)	214
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	2 cut(s)	210, 796
Bst2BI	CACGAG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	850
BstAUI	TGTACA	1 cut(s)	718
BstC8I	GCNNGC	5 cut(s)	230, 349, 396, 400, 585
BstDEI	CTNAG	4 cut(s)	9, 104, 138, 773
BstF5I	GGATG	3 cut(s)	289, 675, 771
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	818, 834
BstNSI	RCATGY	4 cut(s)	89, 232, 587, 667
BstSCI	CCNGG	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	795
BtsCI	GGATG	3 cut(s)	289, 675, 771
BtsIMutI	CAGTG	3 cut(s)	17, 721, 855
Cac8I	GCNNGC	5 cut(s)	230, 349, 396, 400, 585
CfoI	GCGC	1 cut(s)	760
Cfr13I	GGNCC	2 cut(s)	142, 157
Csp6I	GTAC	5 cut(s)	366, 376, 512, 537, 719
CviAII	CATG	7 cut(s)	86, 229, 493, 572, 584, 588, 664
CviJI	RGCY	8 cut(s)	5, 48, 137, 341, 466, 795, 821, 837
CviKI_1	RGCY	8 cut(s)	5, 48, 137, 341, 466, 795, 821, 837
CviQI	GTAC	5 cut(s)	366, 376, 512, 537, 719
DdeI	CTNAG	4 cut(s)	9, 104, 138, 773
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraI	TTTAAA	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	860
DseDI	GACNNNNNNGTC	1 cut(s)	860
EaeI	YGGCCR	1 cut(s)	793
Eco130I	CCWWGG	2 cut(s)	210, 796
Eco47I	GGWCC	2 cut(s)	142, 157
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	210, 796
EcoT22I	ATGCAT	3 cut(s)	230, 585, 589
ErhI	CCWWGG	2 cut(s)	210, 796
FaeI	CATG	7 cut(s)	89, 232, 496, 575, 587, 591, 667
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	7 cut(s)	85, 228, 492, 571, 583, 587, 663
FauNDI	CATATG	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	309
FokI	GGATG	3 cut(s)	296, 682, 778
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	795
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	1 cut(s)	760
Hin1II	CATG	7 cut(s)	89, 232, 496, 575, 587, 591, 667
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HincII	GTYRAC	2 cut(s)	310, 697
HindII	GTYRAC	2 cut(s)	310, 697
HinfI	GANTC	4 cut(s)	68, 100, 546, 698
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	6 cut(s)	83, 310, 539, 697, 719, 853
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	4 cut(s)	80, 140, 779, 865
Hpy8I	GTNNAC	6 cut(s)	83, 310, 539, 697, 719, 853
Hpy99I	CGWCG	2 cut(s)	477, 501
HpyAV	CCTTC	3 cut(s)	425, 608, 632
HpyCH4III	ACNGT	1 cut(s)	850
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	9 cut(s)	24, 228, 347, 402, 480, 552, 583, 587, 648
HpyF10VI	GCNNNNNNNGC	2 cut(s)	818, 834
HpyF3I	CTNAG	4 cut(s)	9, 104, 138, 773
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	7 cut(s)	89, 232, 496, 575, 587, 591, 667
HspAI	GCGC	1 cut(s)	758
KpnI	GGTACC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	214
LweI	GCATC	3 cut(s)	312, 570, 799
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	475
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	647
MflI	RGATCY	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	8 cut(s)	41, 254, 329, 435, 481, 525, 617, 888
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	3 cut(s)	94, 555, 692
MnlI	CCTC	6 cut(s)	58, 100, 284, 456, 605, 887
Mox20I	TGGCCA	1 cut(s)	795
Mph1103I	ATGCAT	3 cut(s)	230, 585, 589
MroXI	GAANNNNTTC	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	8 cut(s)	129, 162, 269, 411, 441, 488, 653, 892
MslI	CAYNNNNRTG	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	795
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	543
MssI	GTTTAAAC	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	818, 834
NciI	CCSGG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	7 cut(s)	89, 232, 496, 575, 587, 591, 667
NlaIV	GGNNCC	3 cut(s)	144, 216, 367
NsiI	ATGCAT	3 cut(s)	230, 585, 589
NspI	RCATGY	4 cut(s)	89, 232, 587, 667
PaeI	GCATGC	2 cut(s)	232, 587
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	68
PleI	GAGTC	3 cut(s)	94, 554, 692
PmeI	GTTTAAAC	1 cut(s)	270
PpsI	GAGTC	3 cut(s)	94, 554, 692
PpuMI	RGGWCCY	1 cut(s)	142
PscI	ACATGT	1 cut(s)	663
PshBI	ATTAAT	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	144, 216, 367
PspPI	GGNCC	2 cut(s)	142, 157
PspPPI	RGGWCCY	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	5 cut(s)	367, 377, 513, 538, 720
RsaNI	GTAC	5 cut(s)	366, 376, 512, 537, 719
RseI	CAYNNNNRTG	1 cut(s)	668
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	8 cut(s)	129, 162, 269, 411, 441, 488, 653, 892
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	142, 157
SchI	GAGTC	3 cut(s)	94, 555, 692
ScrFI	CCNGG	1 cut(s)	543
SfaNI	GCATC	3 cut(s)	312, 570, 799
SinI	GGWCC	2 cut(s)	142, 157
SmiMI	CAYNNNNRTG	1 cut(s)	668
SphI	GCATGC	2 cut(s)	232, 587
Sse9I	AATT	8 cut(s)	41, 254, 329, 435, 481, 525, 617, 888
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	2 cut(s)	210, 796
TaaI	ACNGT	1 cut(s)	850
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	309
TasI	AATT	8 cut(s)	41, 254, 329, 435, 481, 525, 617, 888
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	8 cut(s)	129, 162, 269, 411, 441, 488, 653, 892
Tru9I	TTAA	8 cut(s)	129, 162, 269, 411, 441, 488, 653, 892
TscAI	CASTG	3 cut(s)	17, 721, 855
TspDTI	ATGAA	2 cut(s)	300, 322
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	3 cut(s)	17, 721, 855
VpaK11BI	GGWCC	2 cut(s)	142, 157
VspI	ATTAAT	1 cut(s)	653
XapI	RAATTY	3 cut(s)	254, 329, 888
XceI	RCATGY	4 cut(s)	89, 232, 587, 667
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	3 cut(s)	230, 585, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.