Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005528.1

Orthogroup ID

OG0006126

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 8534

Gene Structure 8534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1469 bp

ggacttggaagtttcctgattctgcaaatagctcttccagatttccagaatttaggaaatccagtggcaattccatcatcgaattagttagcacacaaacaaaaataatgggcgtacattatgtgcagggtgtaattatcttccatgatgtgtttgacaatgaacacaatgttgggggtgtccaaattagagtggaaggtgtatttatatggccgtttaaacagcttcgaatggtagctaacagtggaaaagagggagactcgagccaagaggaagattatattttgtctaacccgtaccatatgcttggagctttctcttcccaggttttccaagaatctccacgagataagctatggaggaaaaagcattcgccaatttatgaaatggagaaacattgtaatatagaaattgcaggccaaatttcacgtgtatcgtccgcccataatgatggagatcgcgatcgttaccaaatagaagggttgatggagagtcctgcagtggatgatgatggagattgcttctcacccttgatattaaatgctacttctgtcaatgtggaggtgtactataacaaagcagtgaactataccttgatggtcacctttatctccttcctacaagttcttctcttaattcggcaaatggaacatagcaatactcagtcgggggctgccaaagtttcgattctaatgattggccaacaggctatcatggatgcttatctttgccttctacacttgacagcaggaatacttgttgaatccttatttaatgcgtttgcaaccgctgcttttttcaagtttgttgtgttctcaatattcgagatgagataccttcttgctatatggaaagcaagtaggcctacaaatagtggagaaggttgggagacgatgaggcgtgagctttcagttttatatagccgtttctatggaattcttttaggaggcatcctggtcatgtacgagttccacaacttcctgagacctattcttctccttatgtactccttttggatacctcaaataatcaccaatgttatccgtgattcaagaaaacccttgcaccctcattacatcttaggcatgactgttactcggctagcaatcccgttatacatatttggttgccctaacaacttcatgcgcattgagcctgacaagagttggtgtatttgtttgagtttatttattggactgcaagcctcaattcttcttctccagcattatcttggctctcgttggttcattcctcgtcagattctacctgagaaatatagctaccacagaaggtctgatcaggatacaaatcatgccacagactgtgtcatttgcatgactgcaattgatctcacacagcgttcagatgattgcatggtgacaccatgcgatcatttctttcattccggatcaactgacatcacccaacacactaattttggttgggtattgaatccattttctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005975 GO:0005976 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009664 GO:0009791 GO:0009827 GO:0009845 GO:0009987 GO:0010154 GO:0010191 GO:0010393 GO:0010498 GO:0012505 GO:0016043 GO:0016567 GO:0016740 GO:0017144 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042545 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045229 GO:0045488 GO:0048316 GO:0048363 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0080001 GO:0090351 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

488

Amino Acids

55.92

Weight (kDa)

6.3

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2921	PF11145	185 - 419	8e-100	Transmembrane E3 ligase/DUF2921 transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20650 AT2G20650 AT4G28370 AT4G28370 AT4G28370 AT4G28370
fragaria_vesca	FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490 FvH4_6g26490
malus_domestica	MD09G1244500.v1.1 MD17G1236500.v1.1
prunus_persica	Prupe.3G139300_v2.0.a1 Prupe.3G139300_v2.0.a1
pyrus_communis	pycom09g16280 pycom17g23960
rosa_chinensis	RchiOBHm_Chr2g0127681
rosa_laevigata	RLG00000018942
rosa_multiflora	Rmu_sc0005528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116670
rosa_rugosa	Rorug02G0271600
rosa_samantha	Rh2AG323800 Rh2BG333000 Rh2CG311400
rosa_wichuraiana	Rw2G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1147
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	1 cut(s)	1405
AciI	CCGC	2 cut(s)	440, 788
AclWI	GGATC	1 cut(s)	1416
AcoI	YGGCCR	2 cut(s)	211, 699
AcsI	RAATTY	3 cut(s)	49, 422, 935
AcvI	CACGTG	1 cut(s)	430
AfaI	GTAC	5 cut(s)	116, 298, 568, 964, 1006
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	763, 801, 1052, 1452
AjnI	CCWGG	2 cut(s)	323, 953
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	7 cut(s)	32, 225, 238, 313, 354, 906, 1280
AluI	AGCT	7 cut(s)	32, 225, 238, 313, 354, 906, 1280
Alw26I	GTCTC	3 cut(s)	251, 883, 978
AlwI	GGATC	1 cut(s)	1416
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	1405
AoxI	GGCC	4 cut(s)	211, 417, 699, 862
ApeKI	GCWGC	2 cut(s)	673, 790
ApoI	RAATTY	3 cut(s)	49, 422, 935
AspLEI	GCGC	1 cut(s)	1148
AsuHPI	GGTGA	5 cut(s)	518, 594, 1023, 1389, 1413
AsuII	TTCGAA	1 cut(s)	228
AsuNHI	GCTAGC	1 cut(s)	1101
AvaI	CYCGRG	1 cut(s)	261
BalI	TGGCCA	1 cut(s)	701
BauI	CACGAG	1 cut(s)	344
BbrPI	CACGTG	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	660, 777
BccI	CCATC	5 cut(s)	82, 445, 480, 505, 591
BceAI	ACGGC	2 cut(s)	198, 908
BciT130I	CCWGG	2 cut(s)	325, 955
BciVI	GTATCC	2 cut(s)	1010, 1296
BclI	TGATCA	1 cut(s)	1296
BcoDI	GTCTC	3 cut(s)	251, 883, 978
BfaI	CTAG	1 cut(s)	1102
BfmI	CTRYAG	1 cut(s)	497
BfuI	GTATCC	2 cut(s)	1010, 1296
BisI	GCNGC	2 cut(s)	674, 791
BlsI	GCNGC	2 cut(s)	675, 792
Bme1390I	CCNGG	2 cut(s)	325, 955
BmeT110I	CYCGRG	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	325, 955
BmsI	GCATC	2 cut(s)	708, 959
BmtI	GCTAGC	1 cut(s)	1105
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	1 cut(s)	1204
Bpu14I	TTCGAA	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	430
BsaBI	GATNNNNATC	4 cut(s)	455, 461, 722, 1307
BsaI	GGTCTC	1 cut(s)	978
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	1405
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	4 cut(s)	455, 461, 722, 1307
BseAI	TCCGGA	1 cut(s)	1405
BseBI	CCWGG	2 cut(s)	325, 955
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	3 cut(s)	510, 723, 950
BseJI	GATNNNNATC	4 cut(s)	455, 461, 722, 1307
BseMII	CTCAG	3 cut(s)	676, 973, 1259
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	660, 777
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	4 cut(s)	213, 419, 701, 864
BsiEI	CGRYCG	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	1406
BsmAI	GTCTC	3 cut(s)	251, 883, 978
BsmBI	CGTCTC	1 cut(s)	883
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	4 cut(s)	213, 419, 701, 864
Bso31I	GGTCTC	1 cut(s)	978
BsoBI	CYCGRG	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	1405
Bsp143I	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
Bsp68I	TCGCGA	1 cut(s)	461
BspACI	CCGC	2 cut(s)	440, 788
BspANI	GGCC	4 cut(s)	213, 419, 701, 864
BspCNI	CTCAG	3 cut(s)	675, 974, 1260
BspEI	TCCGGA	1 cut(s)	1405
BspFNI	CGCG	1 cut(s)	461
BspMAI	CTGCAG	1 cut(s)	501
BspOI	GCTAGC	1 cut(s)	1105
BspPI	GGATC	1 cut(s)	1416
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	978
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
BssSI	CACGAG	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	325, 955
Bst4CI	ACNGT	3 cut(s)	244, 1092, 1324
Bst6I	CTCTTC	2 cut(s)	39, 324
BstAPI	GCANNNNNTGC	1 cut(s)	790
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	417, 1103, 1202
BstDEI	CTNAG	4 cut(s)	662, 982, 1080, 1268
BstEII	GGTNACC	1 cut(s)	600
BstF5I	GGATG	3 cut(s)	510, 723, 950
BstFNI	CGCG	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	1148
BstKTI	GATC	6 cut(s)	459, 465, 1299, 1350, 1392, 1411
BstMAI	GTCTC	3 cut(s)	251, 883, 978
BstMBI	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	2 cut(s)	790, 1152
BstNI	CCWGG	2 cut(s)	325, 955
BstPI	GGTNACC	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	323, 953
BstSFI	CTRYAG	1 cut(s)	497
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	660, 777
BstXI	CCANNNNNNTGG	2 cut(s)	307, 451
BsuI	GTATCC	2 cut(s)	1010, 1296
BsuRI	GGCC	4 cut(s)	213, 419, 701, 864
BtsCI	GGATG	3 cut(s)	510, 723, 950
BtsI	GCAGTG	2 cut(s)	506, 587
BtsIMutI	CAGTG	4 cut(s)	69, 249, 506, 587
BtuMI	TCGCGA	1 cut(s)	461
Cac8I	GCNNGC	3 cut(s)	417, 1103, 1202
CfoI	GCGC	1 cut(s)	1148
Csp6I	GTAC	5 cut(s)	115, 297, 567, 963, 1005
CviAII	CATG	9 cut(s)	145, 714, 960, 1086, 1143, 1312, 1335, 1374, 1385
CviQI	GTAC	5 cut(s)	115, 297, 567, 963, 1005
DdeI	CTNAG	4 cut(s)	662, 982, 1080, 1268
DpnI	GATC	6 cut(s)	458, 464, 1298, 1349, 1391, 1410
DpnII	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
DraI	TTTAAA	1 cut(s)	219
EaeI	YGGCCR	2 cut(s)	211, 699
Eam1104I	CTCTTC	2 cut(s)	39, 324
EarI	CTCTTC	2 cut(s)	39, 324
EciI	GGCGGA	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	864
Eco31I	GGTCTC	1 cut(s)	978
Eco72I	CACGTG	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	600
EcoO65I	GGTNACC	1 cut(s)	600
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	2 cut(s)	323, 953
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	9 cut(s)	148, 717, 963, 1089, 1146, 1315, 1338, 1377, 1388
FatI	CATG	9 cut(s)	144, 713, 959, 1085, 1142, 1311, 1334, 1373, 1384
FauNDI	CATATG	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	1296
Fnu4HI	GCNGC	2 cut(s)	674, 791
FokI	GGATG	3 cut(s)	517, 730, 937
Fsp4HI	GCNGC	2 cut(s)	674, 791
FspAI	RTGCGCAY	1 cut(s)	1147
FspBI	CTAG	1 cut(s)	1102
FspI	TGCGCA	1 cut(s)	1147
GlaI	GCGC	1 cut(s)	1147
GluI	GCNGC	2 cut(s)	674, 791
GsuI	CTGGAG	1 cut(s)	1204
HaeIII	GGCC	4 cut(s)	213, 419, 701, 864
HapII	CCGG	1 cut(s)	1406
HhaI	GCGC	1 cut(s)	1148
Hin1II	CATG	9 cut(s)	148, 717, 963, 1089, 1146, 1315, 1338, 1377, 1388
Hin6I	GCGC	1 cut(s)	1146
HinP1I	GCGC	1 cut(s)	1146
HinfI	GANTC	9 cut(s)	19, 259, 337, 492, 687, 763, 1048, 1260, 1452
HpaII	CCGG	1 cut(s)	1406
HphI	GGTGA	5 cut(s)	518, 594, 1023, 1389, 1413
Hpy166II	GTNNAC	2 cut(s)	567, 585
Hpy188I	TCNGA	3 cut(s)	1259, 1296, 1365
Hpy188III	TCNNGA	9 cut(s)	16, 38, 46, 460, 825, 981, 1052, 1300, 1406
Hpy8I	GTNNAC	2 cut(s)	567, 585
HpyAV	CCTTC	7 cut(s)	190, 472, 624, 742, 847, 874, 1283
HpyCH4III	ACNGT	3 cut(s)	244, 1092, 1324
HpyCH4IV	ACGT	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	790, 1152
HpyF3I	CTNAG	4 cut(s)	662, 982, 1080, 1268
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	9 cut(s)	148, 717, 963, 1089, 1146, 1315, 1338, 1377, 1388
HspAI	GCGC	1 cut(s)	1146
Kpn2I	TCCGGA	1 cut(s)	1405
Ksp22I	TGATCA	1 cut(s)	1296
Kzo9I	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	660, 777
LweI	GCATC	2 cut(s)	708, 959
MaeI	CTAG	1 cut(s)	1102
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	4 cut(s)	466, 600, 1092, 1377
MalI	GATC	6 cut(s)	458, 464, 1298, 1349, 1391, 1410
MboI	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
MboII	GAAGA	8 cut(s)	26, 132, 286, 311, 619, 985, 1204, 1207
MfeI	CAATTG	1 cut(s)	1343
MlsI	TGGCCA	1 cut(s)	701
MluNI	TGGCCA	1 cut(s)	701
MlyI	GAGTC	2 cut(s)	253, 501
Mox20I	TGGCCA	1 cut(s)	701
MroI	TCCGGA	1 cut(s)	1405
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	4 cut(s)	218, 538, 634, 773
MslI	CAYNNNNRTG	2 cut(s)	449, 1333
Msp20I	TGGCCA	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	1 cut(s)	1406
MspR9I	CCNGG	2 cut(s)	325, 955
MssI	GTTTAAAC	1 cut(s)	219
MunI	CAATTG	1 cut(s)	1343
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	325, 955
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	790, 1152
NdeI	CATATG	1 cut(s)	302
NdeII	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
NheI	GCTAGC	1 cut(s)	1101
NlaIII	CATG	9 cut(s)	148, 717, 963, 1089, 1146, 1315, 1338, 1377, 1388
NmeAIII	GCCGAG	1 cut(s)	1077
NmuCI	GTSAC	2 cut(s)	600, 1377
NruI	TCGCGA	1 cut(s)	461
NsbI	TGCGCA	1 cut(s)	1147
NspV	TTCGAA	1 cut(s)	228
PaeR7I	CTCGAG	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	864
PciSI	GCTCTTC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	7 cut(s)	19, 337, 687, 763, 1048, 1260, 1452
PflFI	GACNNNGTC	1 cut(s)	1324
PkrI	GCNGC	2 cut(s)	675, 792
Ple19I	CGATCG	1 cut(s)	465
PleI	GAGTC	2 cut(s)	253, 500
PmaCI	CACGTG	1 cut(s)	430
PmeI	GTTTAAAC	1 cut(s)	219
PmlI	CACGTG	1 cut(s)	430
PpsI	GAGTC	2 cut(s)	253, 500
Ppu21I	YACGTR	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	323, 953
PspCI	CACGTG	1 cut(s)	430
PspEI	GGTNACC	1 cut(s)	600
PspGI	CCWGG	2 cut(s)	323, 953
PspXI	VCTCGAGB	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	501
PsyI	GACNNNGTC	1 cut(s)	1324
PvuI	CGATCG	1 cut(s)	465
RruI	TCGCGA	1 cut(s)	461
RsaI	GTAC	5 cut(s)	116, 298, 568, 964, 1006
RsaNI	GTAC	5 cut(s)	115, 297, 567, 963, 1005
RseI	CAYNNNNRTG	2 cut(s)	449, 1333
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	4 cut(s)	218, 538, 634, 773
SatI	GCNGC	2 cut(s)	674, 791
Sau3AI	GATC	6 cut(s)	456, 462, 1296, 1347, 1389, 1408
SchI	GAGTC	2 cut(s)	253, 501
ScrFI	CCNGG	2 cut(s)	325, 955
SfaNI	GCATC	2 cut(s)	708, 959
SfcI	CTRYAG	1 cut(s)	497
Sfr274I	CTCGAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	449, 1333
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	2 cut(s)	440, 788
SspI	AATATT	1 cut(s)	821
SspMI	CTAG	1 cut(s)	1102
StuI	AGGCCT	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	323, 953
TaaI	ACNGT	3 cut(s)	244, 1092, 1324
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	5 cut(s)	80, 228, 262, 685, 824
TatI	WGTACW	2 cut(s)	566, 1004
TfiI	GAWTC	7 cut(s)	19, 337, 687, 763, 1048, 1260, 1452
Tru1I	TTAA	4 cut(s)	218, 538, 634, 773
Tru9I	TTAA	4 cut(s)	218, 538, 634, 773
TscAI	CASTG	4 cut(s)	69, 249, 506, 587
TseFI	GTSAC	2 cut(s)	600, 1377
TseI	GCWGC	2 cut(s)	673, 790
Tsp45I	GTSAC	2 cut(s)	600, 1377
TspDTI	ATGAA	5 cut(s)	176, 398, 1131, 1236, 1390
TspGWI	ACGGA	1 cut(s)	1033
TspRI	CASTG	4 cut(s)	69, 249, 506, 587
Tth111I	GACNNNGTC	1 cut(s)	1324
XapI	RAATTY	3 cut(s)	49, 422, 935
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1228
XhoI	CTCGAG	1 cut(s)	261
XspI	CTAG	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.