Rmu_sc0005610.1_g000002

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005610.1
OG0021395
Physical Location & Seq
Reverse (-)
768 .. 2248
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005610.1_g000002.1.cds

Sequence Viewer

Length: 468 bp
atgctcttacatgtcggtcacataccgaccctcataatctgctcagctgaagcagctcaacaggtcttgagagataatgacatcctctgctgtagtagactagactccacggggtctcaaaaaatcacttgcaactatctagacatgacatttgcgccatacggtggaatagatactggtgcaatcaccatggagtggaagatggttgggcttgctaggaagcctagacttatgaagaaagcacaagaagaagttagaaaccttgttagaaacaaagggaaagtctctgaaagtgatatcgaacaacttcaatatctcaagatgattgtgaaagaaacacttcggttgcatcctccagctccttttcttcctagagagaccatgtctccctttaaagtccttggttatgttgtggaaccaaaaacactaatccttgttaatcagtgggcaatctcaagagatccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

155

Amino Acids

17.52

Weight (kDa)

8.93

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0432691
rosa_multiflora Rmu_sc0005610.1_g000002 Rmu_sc0008245.1_g000001 Rmu_sc0012180.1_g000013
rosa_samantha Rh4AG316200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 164, 195
AccI GTMKAC 1 cut(s) 97
AclWI GGATC 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 164, 195
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 311
AluBI AGCT 3 cut(s) 47, 56, 359
AluI AGCT 3 cut(s) 47, 56, 359
Alw26I GTCTC 4 cut(s) 120, 289, 371, 390
AlwI GGATC 1 cut(s) 455
ApeKI GCWGC 1 cut(s) 53
ArsI GACNNNNNNTTYG 4 cut(s) 134, 166, 267, 299
Asp700I GAANNNNTTC 2 cut(s) 306, 339
AspLEI GCGC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 178
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 196
BcoDI GTCTC 4 cut(s) 120, 289, 371, 390
BfaI CTAG 5 cut(s) 101, 140, 216, 225, 372
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 1 cut(s) 54
BlpI GCTNAGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 1 cut(s) 358
BpmI CTGGAG 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 43
BpuEI CTTGAG 3 cut(s) 88, 302, 439
BsaI GGTCTC 2 cut(s) 120, 371
BsaJI CCNNGG 3 cut(s) 108, 189, 400
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 195
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 108, 189, 400
BseGI GGATG 2 cut(s) 81, 349
BseLI CCNNNNNNNGG 2 cut(s) 164, 195
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 164, 195
BsmAI GTCTC 4 cut(s) 120, 289, 371, 390
Bso31I GGTCTC 2 cut(s) 120, 371
Bsp143I GATC 1 cut(s) 460
Bsp1720I GCTNAGC 1 cut(s) 43
Bsp19I CCATGG 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 1 cut(s) 455
BspTNI GGTCTC 2 cut(s) 120, 371
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 3 cut(s) 108, 189, 400
BssMI GATC 1 cut(s) 460
BssT1I CCWWGG 2 cut(s) 189, 400
Bst4CI ACNGT 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 43
BstDSI CCRYGG 2 cut(s) 108, 189
BstF5I GGATG 2 cut(s) 81, 349
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 4 cut(s) 120, 289, 371, 390
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
BtgI CCRYGG 2 cut(s) 108, 189
BtsCI GGATG 2 cut(s) 81, 349
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 1 cut(s) 157
CviAII CATG 5 cut(s) 11, 145, 190, 382, 465
CviJI RGCY 5 cut(s) 47, 56, 211, 223, 359
CviKI_1 RGCY 5 cut(s) 47, 56, 211, 223, 359
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
DraI TTTAAA 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 189, 400
Eco31I GGTCTC 2 cut(s) 120, 371
Eco32I GATATC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 69
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 189, 400
ErhI CCWWGG 2 cut(s) 189, 400
FaeI CATG 5 cut(s) 14, 148, 193, 385, 468
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 5 cut(s) 10, 144, 189, 381, 464
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 68, 336
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 5 cut(s) 101, 140, 216, 225, 372
GlaI GCGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 339
HhaI GCGC 1 cut(s) 157
Hin1II CATG 5 cut(s) 14, 148, 193, 385, 468
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 4 cut(s) 67, 140, 319, 456
Hpy8I GTNNAC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 132, 182, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 43
Hsp92II CATG 5 cut(s) 14, 148, 193, 385, 468
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 3 cut(s) 47, 162, 369
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 358
MaeI CTAG 5 cut(s) 101, 140, 216, 225, 372
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 4 cut(s) 211, 247, 260, 359
MflI RGATCY 1 cut(s) 460
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 3 cut(s) 41, 95, 363
MroXI GAANNNNTTC 2 cut(s) 306, 339
MseI TTAA 2 cut(s) 393, 438
MspA1I CMGCKG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 53
NcoI CCATGG 1 cut(s) 189
NdeII GATC 1 cut(s) 460
NlaIII CATG 5 cut(s) 14, 148, 193, 385, 468
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 14
PciI ACATGT 1 cut(s) 10
PdmI GAANNNNTTC 2 cut(s) 306, 339
PflFI GACNNNGTC 1 cut(s) 382
PflMI CCANNNNNTGG 2 cut(s) 164, 195
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PscI ACATGT 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 417
PsuI RGATCY 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 393, 438
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 460
SchI GAGTC 1 cut(s) 98
SetI ASST 5 cut(s) 49, 58, 66, 264, 361
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 91
SmlI CTYRAG 3 cut(s) 67, 317, 454
SmoI CTYRAG 3 cut(s) 67, 317, 454
SspMI CTAG 5 cut(s) 101, 140, 216, 225, 372
StyI CCWWGG 2 cut(s) 189, 400
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 300
TaqII GACCGA 1 cut(s) 5
Tru1I TTAA 2 cut(s) 393, 438
Tru9I TTAA 2 cut(s) 393, 438
TscAI CASTG 1 cut(s) 449
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 1 cut(s) 449
Tth111I GACNNNGTC 1 cut(s) 382
Van91I CCANNNNNTGG 2 cut(s) 164, 195
XbaI TCTAGA 1 cut(s) 139
XceI RCATGY 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 97
XmnI GAANNNNTTC 2 cut(s) 306, 339
XspI CTAG 5 cut(s) 101, 140, 216, 225, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.