Rh4AG316200

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0021395
Physical Location & Seq
Reverse (-)
62688143 .. 62688382
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG316200.1

Sequence Viewer

Length: 240 bp
ATGGTGTGGGCGATGGCAGAGCTTGCTAGGAAGCCGAGAGTGATGAACAAAGCACAGGAAGAAGTTAGAAAGTTGGTTGGAAAGAAAGGAAAAGTCACCGAGAGTGATACGGAACAGCTTCAATACCTCAAGATGATAGTTAAAGAAACACTTCGGCTGCATCCTCCAGTTCCTCTAATTCTTCCAAGAGAGACCATGTCCCCTTTTAAAGTTTTTGGTTATGATGTAGAACCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

79

Amino Acids

9.17

Weight (kDa)

9.57

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 77 6.7e-22 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0432691
rosa_multiflora Rmu_sc0005610.1_g000002 Rmu_sc0008245.1_g000001 Rmu_sc0012180.1_g000013
rosa_samantha Rh4AG316200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 2 cut(s) 22, 118
AluI AGCT 2 cut(s) 22, 118
Alw26I GTCTC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 157
Asp700I GAANNNNTTC 2 cut(s) 117, 150
AsuHPI GGTGA 1 cut(s) 88
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 184
Bso31I GGTCTC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 24
BstF5I GGATG 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 24
CviAII CATG 1 cut(s) 196
CviJI RGCY 4 cut(s) 22, 34, 118, 157
CviKI_1 RGCY 4 cut(s) 22, 34, 118, 157
DraI TTTAAA 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 185
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 197, 222
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 150
Hin1II CATG 1 cut(s) 199
HphI GGTGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 199
LpnPI CCDG 2 cut(s) 41, 180
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 94
MboII GAAGA 2 cut(s) 71, 173
MluCI AATT 2 cut(s) 177, 235
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 3 cut(s) 137, 174, 183
MroXI GAANNNNTTC 2 cut(s) 117, 150
MseI TTAA 3 cut(s) 141, 207, 238
MwoI GCNNNNNNNGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 117, 150
PflFI GACNNNGTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 159
PsyI GACNNNGTC 1 cut(s) 196
SaqAI TTAA 3 cut(s) 141, 207, 238
SatI GCNGC 1 cut(s) 158
SetI ASST 3 cut(s) 24, 120, 129
SfaNI GCATC 1 cut(s) 169
SgeI CNNG 9 cut(s) 35, 39, 48, 68, 112, 142, 179, 198, 208
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 177, 235
SspMI CTAG 1 cut(s) 27
TasI AATT 2 cut(s) 177, 235
Tru1I TTAA 3 cut(s) 141, 207, 238
Tru9I TTAA 3 cut(s) 141, 207, 238
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 125
Tth111I GACNNNGTC 1 cut(s) 196
XmnI GAANNNNTTC 2 cut(s) 117, 150
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.