Rmu_sc0008245.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008245.1
OG0021395
Physical Location & Seq
Forward (+)
1 .. 684
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008245.1_g000001.1.cds

Sequence Viewer

Length: 354 bp
gatttgtttctggctggaatagatactagtggaattaccatggtgtgggcgatggcagagcttgctaggaagccgagagtgatgaacaaagcacaggaagaagttagaaacttggttggaaagaaaggaaaagtcaccgagagtgatacggaacagcttcaatacctcaagatgatagttaacgaaacacatcggctgcatcctccagttcctctaattcttccaagagagaccatgtccccttttaaagtttttggttatgatgtagaacctaaagcactaatccttattaatgattgggcactctcgcgggattcaggattttggagagacccagaagagttcatcccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

117

Amino Acids

13.42

Weight (kDa)

5.7

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0432691
rosa_multiflora Rmu_sc0005610.1_g000002 Rmu_sc0008245.1_g000001 Rmu_sc0012180.1_g000013
rosa_samantha Rh4AG316200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 45
AccII CGCG 1 cut(s) 310
AciI CCGC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 161
AhlI ACTAGT 1 cut(s) 26
AluBI AGCT 2 cut(s) 61, 157
AluI AGCT 2 cut(s) 61, 157
Alw26I GTCTC 2 cut(s) 224, 324
ApeKI GCWGC 1 cut(s) 196
AseI ATTAAT 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 224, 324
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 2 cut(s) 27, 66
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 152
BsaI GGTCTC 2 cut(s) 224, 324
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 199, 345
BseLI CCNNNNNNNGG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 224, 324
BsmFI GGGAC 1 cut(s) 223
Bso31I GGTCTC 2 cut(s) 224, 324
Bsp1286I GDGCHC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 1 cut(s) 310
BspFNI CGCG 1 cut(s) 310
BspTNI GGTCTC 2 cut(s) 224, 324
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 199, 345
BstFNI CGCG 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 224, 324
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 304
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 2 cut(s) 199, 345
Cac8I GCNNGC 1 cut(s) 63
CviAII CATG 2 cut(s) 40, 235
CviJI RGCY 5 cut(s) 14, 61, 73, 157, 196
CviKI_1 RGCY 5 cut(s) 14, 61, 73, 157, 196
DraI TTTAAA 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 39
Eco31I GGTCTC 2 cut(s) 224, 324
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 43, 238
FaiI YATR 4 cut(s) 41, 236, 261, 352
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 39, 234
FauI CCCGC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 2 cut(s) 186, 332
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 27, 66
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 189
Hin1II CATG 2 cut(s) 43, 238
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 314
HpaI GTTAAC 1 cut(s) 181
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 169, 318
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 43, 238
KspAI GTTAAC 1 cut(s) 181
LpnPI CCDG 4 cut(s) 80, 219, 303, 348
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 27, 66
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 3 cut(s) 110, 212, 350
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 2 cut(s) 33, 216
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 3 cut(s) 176, 213, 222
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 3 cut(s) 180, 246, 291
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 62
NcoI CCATGG 1 cut(s) 39
NlaIII CATG 2 cut(s) 43, 238
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 314
PflFI GACNNNGTC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 1 cut(s) 198
PshBI ATTAAT 1 cut(s) 291
PsyI GACNNNGTC 1 cut(s) 235
SaqAI TTAA 3 cut(s) 180, 246, 291
SatI GCNGC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 304
SetI ASST 4 cut(s) 63, 159, 168, 274
SfaNI GCATC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 26
Sse9I AATT 2 cut(s) 33, 216
SsiI CCGC 1 cut(s) 310
SspMI CTAG 2 cut(s) 27, 66
StyI CCWWGG 1 cut(s) 39
TasI AATT 2 cut(s) 33, 216
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 3 cut(s) 180, 246, 291
Tru9I TTAA 3 cut(s) 180, 246, 291
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 98, 334
TspGWI ACGGA 1 cut(s) 164
Tth111I GACNNNGTC 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 45
VspI ATTAAT 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 27, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.