Rmu_sc0012180.1_g000013

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012180.1
OG0021395
Physical Location & Seq
Forward (+)
41459 .. 42331
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012180.1_g000013.1.cds

Sequence Viewer

Length: 495 bp
atgatcatctcaagcctgggtggacgtcacaacaagagcatgacgacatatagagttgatgtgctgcttaaaatagtgagggagcaaactgcgtatggagctgctcagcttggtcataataacatcaaagctgtcctcctggatttgtttctggctggaatagatactagtggaattaccatggtgtgggcgatggcagagcttgctaggaagccgagagtgatgaacaaagcacaggaagaagttagaaacttggttggaaagaaaggaaaagtcaccgagagtgatacggaacagcttcaatacctcaagatgatagttaacgaaacccttcggctgcatcctccagttcctctaattcttccaagagagacaatgtccccttttaaagtttttgattatgatgtagaacctaaagcactaatccttattaatgattgggcactctcgcgggattcaggattttggagagacccagaagagttcatcccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

164

Amino Acids

18.62

Weight (kDa)

7.96

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0432691
rosa_multiflora Rmu_sc0005610.1_g000002 Rmu_sc0008245.1_g000001 Rmu_sc0012180.1_g000013
rosa_samantha Rh4AG316200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 186
AccII CGCG 1 cut(s) 451
AciI CCGC 1 cut(s) 451
AcyI GRCGYC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 1 cut(s) 302
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 2 cut(s) 15, 138
AluBI AGCT 5 cut(s) 101, 109, 131, 202, 298
AluI AGCT 5 cut(s) 101, 109, 131, 202, 298
Alw26I GTCTC 2 cut(s) 365, 465
ApeKI GCWGC 3 cut(s) 64, 101, 337
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 2 cut(s) 297, 330
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 445
BbvI GCAGC 3 cut(s) 51, 88, 324
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 17, 140
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 365, 465
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 2 cut(s) 168, 207
BisI GCNGC 3 cut(s) 65, 102, 338
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 3 cut(s) 66, 103, 339
Bme1390I CCNGG 2 cut(s) 17, 140
BmrFI CCNGG 2 cut(s) 17, 140
BmsI GCATC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 25
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 16, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 347
BseBI CCWGG 2 cut(s) 17, 140
BseDI CCNNGG 2 cut(s) 16, 180
BseGI GGATG 2 cut(s) 340, 486
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 3 cut(s) 51, 88, 324
Bsh1236I CGCG 1 cut(s) 451
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 365, 465
BsmFI GGGAC 1 cut(s) 364
Bso31I GGTCTC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 451
BspTNI GGTCTC 1 cut(s) 465
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 16, 180
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 17, 140
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 25
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 340, 486
BstFNI CGCG 1 cut(s) 451
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 365, 465
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 98, 203
BstNI CCWGG 2 cut(s) 17, 140
BstSCI CCNGG 2 cut(s) 15, 138
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 3 cut(s) 51, 88, 324
BtgI CCRYGG 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 206
BtsCI GGATG 2 cut(s) 340, 486
Cac8I GCNNGC 1 cut(s) 204
CviAII CATG 2 cut(s) 40, 181
CviJI RGCY 9 cut(s) 15, 101, 109, 131, 155, 202, 214, 298, 337
CviKI_1 RGCY 9 cut(s) 15, 101, 109, 131, 155, 202, 214, 298, 337
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraI TTTAAA 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 15, 138
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 43, 184
FaiI YATR 8 cut(s) 41, 49, 51, 96, 117, 182, 402, 493
FaqI GGGAC 1 cut(s) 364
FatI CATG 2 cut(s) 39, 180
FauI CCCGC 1 cut(s) 444
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 65, 102, 338
FokI GGATG 2 cut(s) 327, 473
Fsp4HI GCNGC 3 cut(s) 65, 102, 338
FspBI CTAG 2 cut(s) 168, 207
GluI GCNGC 3 cut(s) 65, 102, 338
GsuI CTGGAG 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 2 cut(s) 43, 184
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 455
HpaI GTTAAC 1 cut(s) 322
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 23, 322
Hpy188III TCNNGA 2 cut(s) 310, 459
Hpy8I GTNNAC 2 cut(s) 23, 322
HpyAV CCTTC 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 203
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 2 cut(s) 43, 184
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 82, 98
Lsp1109I GCAGC 3 cut(s) 51, 88, 324
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 168, 207
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 26, 274
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 251, 353, 491
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 2 cut(s) 174, 357
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 5 cut(s) 72, 146, 317, 354, 363
MroXI GAANNNNTTC 2 cut(s) 297, 330
MseI TTAA 4 cut(s) 69, 321, 387, 432
MspR9I CCNGG 2 cut(s) 17, 140
MvaI CCWGG 2 cut(s) 17, 140
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 2 cut(s) 98, 203
NcoI CCATGG 1 cut(s) 180
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 43, 184
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 26, 274
PdmI GAANNNNTTC 2 cut(s) 297, 330
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 1 cut(s) 376
PflMI CCANNNNNTGG 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 3 cut(s) 66, 103, 339
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 15, 138
PspGI CCWGG 2 cut(s) 15, 138
PsyI GACNNNGTC 1 cut(s) 376
SaqAI TTAA 4 cut(s) 69, 321, 387, 432
SatI GCNGC 3 cut(s) 65, 102, 338
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 17, 140
SduI GDGCHC 1 cut(s) 445
SetI ASST 8 cut(s) 28, 103, 111, 133, 204, 300, 309, 415
SfaNI GCATC 1 cut(s) 349
SmlI CTYRAG 2 cut(s) 10, 308
SmoI CTYRAG 2 cut(s) 10, 308
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 2 cut(s) 174, 357
SsiI CCGC 1 cut(s) 451
SspMI CTAG 2 cut(s) 168, 207
StyD4I CCNGG 2 cut(s) 15, 138
StyI CCWWGG 1 cut(s) 180
TaiI ACGT 1 cut(s) 28
TasI AATT 2 cut(s) 174, 357
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 4 cut(s) 69, 321, 387, 432
Tru9I TTAA 4 cut(s) 69, 321, 387, 432
TseFI GTSAC 2 cut(s) 26, 274
TseI GCWGC 3 cut(s) 64, 101, 337
Tsp45I GTSAC 2 cut(s) 26, 274
TspDTI ATGAA 2 cut(s) 239, 475
TspGWI ACGGA 1 cut(s) 305
Tth111I GACNNNGTC 1 cut(s) 376
Van91I CCANNNNNTGG 1 cut(s) 186
VspI ATTAAT 1 cut(s) 432
XmnI GAANNNNTTC 2 cut(s) 297, 330
XspI CTAG 2 cut(s) 168, 207
ZraI GACGTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.