Rmu_sc0005767.1_g000003

Plasminogen activator inhibitor 1 RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005767.1
OG0018554
Physical Location & Seq
Reverse (-)
15471 .. 19111
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
atgttcatacttgctcctccgagtataggttttgggatcaacaacctagaagcagaagcaactgcgaaccctttcgatttgttaggcgatgacgacaacgacgacttaagtcaacttgctgctatggtggtggttcctgctgccgcccagcccaaggtgttttcagctttaccaaacacatcagctgcttcttctcgcagcaatatcagaagtgcttcttctcgcagcaacatcagaagtgcttcttctcgcagcacagcaatcccaaactgggccaaggttagtgacttggtgccaagattttctatttctgatcagaggcaatgcgaacttctagtgaatctgcagcttgctcaagagcccaaaaccgcccgaaagcaggaggcccaaaaggcccgtcgttgtacaaaacagttagatcaagaattgatgagtgatgttggttcttgtccggccagatttagtgccactgttaatgccgctcctagtgcagctgctaataccgagaatgagaatagagaagaacaagctaatgtggcaatttggtggctttcattttattttattttttggggtcaaagcggtggttttgcttgtcaagatagatatgctacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HABP4_PAI-RBP1 Stm1_N

Protein Analysis

205

Amino Acids

22.26

Weight (kDa)

5.26

Isoelectric Point (pI)

68.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stm1_N PF09598 20 - 75 2.9e-09 Stm1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018554)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0327461
rosa_multiflora Rmu_co8142420.1_g000001 Rmu_sc0005767.1_g000003
rosa_roxburghii Rroxscaffold_3G00240360
rosa_rugosa Rorug07G0349900
rosa_samantha Rh3CG267900 Rh4AG009400 Rh4CG209600 Rh5AG322800 Rh5DG558800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 292
AccBSI CCGCTC 1 cut(s) 482
AciI CCGC 4 cut(s) 144, 369, 480, 582
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 453
AfaI GTAC 1 cut(s) 406
AfiI CCNNNNNNNGG 4 cut(s) 26, 154, 271, 379
AflII CTTAAG 1 cut(s) 106
AluBI AGCT 5 cut(s) 167, 185, 349, 494, 530
AluI AGCT 5 cut(s) 167, 185, 349, 494, 530
AlwI GGATC 1 cut(s) 44
AoxI GGCC 4 cut(s) 273, 384, 393, 453
ApeKI GCWGC 9 cut(s) 119, 140, 185, 198, 225, 252, 346, 491, 494
ArsI GACNNNNNNTTYG 2 cut(s) 382, 414
Asp700I GAANNNNTTC 3 cut(s) 71, 214, 241
AspS9I GGNCC 3 cut(s) 273, 385, 394
BanI GGYRCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 363
BbvI GCAGC 9 cut(s) 106, 127, 172, 210, 237, 264, 358, 481, 503
BclI TGATCA 1 cut(s) 313
BfaI CTAG 3 cut(s) 47, 335, 486
BfmI CTRYAG 1 cut(s) 344
BfrI CTTAAG 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 273, 385, 394
BmiI GGNNCC 2 cut(s) 135, 294
BmrI ACTGGG 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 153, 276
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 154, 271, 379
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 153, 276
BseLI CCNNNNNNNGG 4 cut(s) 26, 154, 271, 379
BseMI GCAATG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 9 cut(s) 106, 127, 172, 210, 237, 264, 358, 481, 503
BseYI CCCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 510
BshFI GGCC 4 cut(s) 275, 386, 395, 455
BshNI GGYRCC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 4 cut(s) 26, 154, 271, 379
BsnI GGCC 4 cut(s) 275, 386, 395, 455
Bsp1286I GDGCHC 1 cut(s) 363
Bsp1407I TGTACA 1 cut(s) 404
Bsp143I GATC 3 cut(s) 36, 313, 418
BspACI CCGC 4 cut(s) 144, 369, 480, 582
BspANI GGCC 4 cut(s) 275, 386, 395, 455
BspLI GGNNCC 2 cut(s) 135, 294
BspMAI CTGCAG 1 cut(s) 348
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 404
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 153, 276
BssMI GATC 3 cut(s) 36, 313, 418
BssT1I CCWWGG 2 cut(s) 153, 276
Bst4CI ACNGT 2 cut(s) 414, 472
BstAFI CTTAAG 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 351
BstKTI GATC 3 cut(s) 39, 316, 421
BstMBI GATC 3 cut(s) 36, 313, 418
BstMWI GCNNNNNNNGC 3 cut(s) 392, 488, 536
BstPAI GACNNNNGTC 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 9 cut(s) 106, 127, 172, 210, 237, 264, 358, 481, 503
BsuRI GGCC 4 cut(s) 275, 386, 395, 455
BtgZI GCGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 351
Cfr13I GGNCC 3 cut(s) 273, 385, 394
Csp6I GTAC 1 cut(s) 405
CviQI GTAC 1 cut(s) 405
DpnI GATC 3 cut(s) 38, 315, 420
DpnII GATC 3 cut(s) 36, 313, 418
EaeI YGGCCR 1 cut(s) 453
Eco130I CCWWGG 2 cut(s) 153, 276
Eco24I GRGCYC 1 cut(s) 363
EcoT14I CCWWGG 2 cut(s) 153, 276
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 2 cut(s) 153, 276
FaiI YATR 4 cut(s) 8, 26, 125, 609
FalI AAGNNNNNCTT 4 cut(s) 202, 234, 229, 261
FbaI TGATCA 1 cut(s) 313
FriOI GRGCYC 1 cut(s) 363
FspBI CTAG 3 cut(s) 47, 335, 486
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 4 cut(s) 275, 386, 395, 455
HapII CCGG 1 cut(s) 452
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 1 cut(s) 340
HpaII CCGG 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 5 cut(s) 21, 209, 236, 313, 318
Hpy188III TCNNGA 3 cut(s) 356, 422, 599
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 2 cut(s) 104, 402
HpyCH4III ACNGT 2 cut(s) 414, 472
HpyCH4V TGCA 2 cut(s) 346, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 488, 536
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 36, 313, 418
LmnI GCTCC 2 cut(s) 19, 487
LpnPI CCDG 6 cut(s) 150, 161, 256, 365, 465, 469
Lsp1109I GCAGC 9 cut(s) 106, 127, 172, 210, 237, 264, 358, 481, 503
MaeI CTAG 3 cut(s) 47, 335, 486
MaeIII GTNAC 1 cut(s) 284
MalI GATC 3 cut(s) 38, 315, 420
MbiI CCGCTC 1 cut(s) 482
MboI GATC 3 cut(s) 36, 313, 418
MboII GAAGA 4 cut(s) 183, 210, 237, 533
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 425, 540
MnlI CCTC 3 cut(s) 27, 312, 376
MroXI GAANNNNTTC 3 cut(s) 71, 214, 241
MseI TTAA 2 cut(s) 107, 474
MspA1I CMGCKG 2 cut(s) 185, 494
MspCI CTTAAG 1 cut(s) 106
MspI CCGG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 392, 488, 536
NdeII GATC 3 cut(s) 36, 313, 418
NlaIV GGNNCC 2 cut(s) 135, 294
NmuCI GTSAC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 3 cut(s) 71, 214, 241
PfeI GAWTC 1 cut(s) 340
PshAI GACNNNNGTC 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 135, 294
PspPI GGNCC 3 cut(s) 273, 385, 394
PstI CTGCAG 1 cut(s) 348
PvuII CAGCTG 2 cut(s) 185, 494
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 107, 474
Sau3AI GATC 3 cut(s) 36, 313, 418
Sau96I GGNCC 3 cut(s) 273, 385, 394
SduI GDGCHC 1 cut(s) 363
SetI ASST 9 cut(s) 31, 48, 159, 169, 187, 282, 351, 496, 532
SfcI CTRYAG 1 cut(s) 344
SfiI GGCCNNNNNGGCC 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 106, 354
SmoI CTYRAG 2 cut(s) 106, 354
Sse9I AATT 2 cut(s) 425, 540
SsiI CCGC 4 cut(s) 144, 369, 480, 582
SspMI CTAG 3 cut(s) 47, 335, 486
StyI CCWWGG 2 cut(s) 153, 276
TaaI ACNGT 2 cut(s) 414, 472
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 425, 540
TatI WGTACW 1 cut(s) 404
TauI GCSGC 2 cut(s) 146, 482
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 2 cut(s) 107, 474
Tru9I TTAA 2 cut(s) 107, 474
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 9 cut(s) 119, 140, 185, 198, 225, 252, 346, 491, 494
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 543
TspRI CASTG 1 cut(s) 475
Vha464I CTTAAG 1 cut(s) 106
XmnI GAANNNNTTC 3 cut(s) 71, 214, 241
XspI CTAG 3 cut(s) 47, 335, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.