Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005996.1

Orthogroup ID

OG0018942

Physical Location & Seq

Genomic Coordinates Forward (+)

86775 .. 88183

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005996.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgcaggttataaaggccgagaaaaggaagcttgggcgtgcacagaagaccatgagtgattattgcatgttggcaggatcacaggttgatgccaatcttcattactttgctgcactagaactttctaggttgactggagattttttctggtatgctggtgcattggaggggagcgtttgtgcattaccgcatgagctggagtataaagctggaagaaaagctcgtatacctgaacgtgaaaaagaagagcttgactctcaaaaggggagggcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

92

Amino Acids

10.37

Weight (kDa)

8.6

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018942)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339461 RchiOBHm_Chr2g0096161 RchiOBHm_Chr6g0291331
rosa_multiflora	Rmu_sc0005996.1_g000017
rosa_roxburghii	Rroxscaffold_1G00035040
rosa_rugosa	Rorug04G0002100
rosa_samantha	Rh1AG290300 Rh2BG302500 Rh3DG310700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	24
AluBI	AGCT	5 cut(s)	31, 196, 209, 221, 250
AluI	AGCT	5 cut(s)	31, 196, 209, 221, 250
Alw21I	GWGCWC	1 cut(s)	43
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	15
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	116, 126
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	2 cut(s)	156, 218
BsaBI	GATNNNNATC	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	93
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	24
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	275
BspPI	GGATC	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	77
BssNAI	GTATAC	1 cut(s)	227
Bst1107I	GTATAC	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	39
BstKTI	GATC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	53
BstZ17I	GTATAC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	275
CviAII	CATG	4 cut(s)	52, 67, 191, 276
CviJI	RGCY	7 cut(s)	17, 31, 196, 209, 221, 250, 272
CviKI_1	RGCY	7 cut(s)	17, 31, 196, 209, 221, 250, 272
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
FaeI	CATG	4 cut(s)	55, 70, 194, 279
FaiI	YATR	8 cut(s)	11, 53, 68, 153, 192, 204, 227, 277
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	4 cut(s)	51, 66, 190, 275
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	116, 126
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	156, 218
HaeIII	GGCC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	55, 70, 194, 279
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	41, 132, 227
Hpy188III	TCNNGA	1 cut(s)	276
Hpy8I	GTNNAC	3 cut(s)	41, 132, 227
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	6 cut(s)	4, 41, 66, 113, 161, 182
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	4 cut(s)	55, 70, 194, 279
Kzo9I	GATC	1 cut(s)	77
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	8 cut(s)	60, 68, 120, 133, 141, 182, 195, 243
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	2 cut(s)	116, 126
MaeII	ACGT	1 cut(s)	235
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MboII	GAAGA	4 cut(s)	58, 89, 225, 257
MhlI	GDGCHC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	160, 261
NdeII	GATC	1 cut(s)	77
NlaIII	CATG	4 cut(s)	55, 70, 194, 279
NmeAIII	GCCGAG	1 cut(s)	43
NspI	RCATGY	1 cut(s)	70
PagI	TCATGA	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PsiI	TTATAA	1 cut(s)	11
SapI	GCTCTTC	1 cut(s)	240
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	79
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	116, 126
TaiI	ACGT	1 cut(s)	238
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	89, 264
VneI	GTGCAC	1 cut(s)	39
XceI	RCATGY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	2 cut(s)	116, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.